Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0031308

Physical Location & Seq

Genomic Coordinates Reverse (-)

2041722 .. 2042417

Gene Structure 696 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG026800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGTTGGGACTTTGGCCCCTTGTGATGATTGGTCCAATGGTGCCATCAGCCTACTTGGATCAACAAATTGATGGGGACAAAGCTTATGGAGCCAGTCTTTGGGAGCCAACTACAGACAAGTGCATCAAATGGCTGGATAAAAAACCACCTCAAAGTGTGATATACATATCTTTTGGAAGCATGGCAAACATTGCAGCAAAACAGGTTGAAGAAATCGCATGGGGCTTGAAAGCAAGTGATCAGCACTTCCTCTGGGTTGTGAAAGAGTACGAGAACAAATTGCCTGATGAGTTCCTGATAGGCGAAACAGGGTTGGTGGTAACATGGTGCAACCAACTAGAGGTACTAGCACATCCAGCTGTGGGATGTTTTGTAACGCACTGCGGATGGAATTCCACGTTGGAGGGATTGGGCCTAGGCGTGCCGATGGTGGGAGTGCCTCAGTGGAGTGATCAGCCAACGAATGCCAAGTTTGTGGAGGAGTTGTGGGGGGTTGGAGTGAGAGTTAAGAAGAATGAAGAGGGGCTTGTGACGAAGGACGAGTTAGAGATGTGTATAAGGGAAGTCATGGTGGGAGAAAGAAGTGATCAGATTAAAAGGAATGTCATGAAATGGAGTGAGGCTGCAAAGAGAGCTGTTAGTGTAAGGGGTAAATCAGATGAGAACATCAATGACTTTATAAGGAAGCTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016043 GO:0016143 GO:0016144 GO:0016740 GO:0016757 GO:0016758 GO:0019748 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0033036 GO:0033037 GO:0033554 GO:0035251 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044272 GO:0044281 GO:0044424 GO:0044464 GO:0044550 GO:0045229 GO:0046527 GO:0047251 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0080043 GO:0080044 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210

Pfam Domains

Protein Families

UDPGT

Protein Analysis

231

Amino Acids

25.96

Weight (kDa)

5.23

Isoelectric Point (pI)

30.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	50 - 207	1.1e-31	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0031308)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004492.1_g000001
rosa_samantha	Rh7DG026800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	680
AccB1I	GGYRCC	1 cut(s)	40
AccB7I	CCANNNNNTGG	1 cut(s)	99
AciI	CCGC	1 cut(s)	384
AclWI	GGATC	1 cut(s)	66
AcsI	RAATTY	1 cut(s)	391
AfaI	GTAC	2 cut(s)	269, 345
AfiI	CCNNNNNNNGG	4 cut(s)	99, 340, 362, 431
AgsI	TTSAA	2 cut(s)	209, 229
AjuI	GAANNNNNNNTTGG	2 cut(s)	383, 415
AluBI	AGCT	4 cut(s)	83, 359, 635, 688
AluI	AGCT	4 cut(s)	83, 359, 635, 688
AlwI	GGATC	1 cut(s)	66
AoxI	GGCC	2 cut(s)	14, 412
ApeKI	GCWGC	2 cut(s)	194, 623
ApoI	RAATTY	1 cut(s)	391
AspA2I	CCTAGG	1 cut(s)	415
AspS9I	GGNCC	3 cut(s)	15, 32, 412
AvaII	GGWCC	1 cut(s)	32
AvrII	CCTAGG	1 cut(s)	415
BanI	GGYRCC	1 cut(s)	40
BbvI	GCAGC	2 cut(s)	206, 610
BccI	CCATC	4 cut(s)	52, 65, 381, 421
BclI	TGATCA	3 cut(s)	238, 451, 586
BfaI	CTAG	3 cut(s)	338, 347, 416
BfmI	CTRYAG	1 cut(s)	111
BisI	GCNGC	2 cut(s)	195, 624
BlnI	CCTAGG	1 cut(s)	415
BlsI	GCNGC	2 cut(s)	196, 625
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	3 cut(s)	15, 32, 412
BmiI	GGNNCC	4 cut(s)	17, 42, 91, 105
BmsI	GCATC	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	415
BsaXI	ACNNNNNCTCC	4 cut(s)	470, 489, 500, 519
Bsc4I	CCNNNNNNNGG	4 cut(s)	99, 340, 362, 431
Bse1I	ACTGG	1 cut(s)	93
Bse3DI	GCAATG	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	415
BseGI	GGATG	3 cut(s)	352, 371, 392
BseLI	CCNNNNNNNGG	4 cut(s)	99, 340, 362, 431
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	1 cut(s)	455
BseNI	ACTGG	1 cut(s)	93
BseRI	GAGGAG	1 cut(s)	494
BseXI	GCAGC	2 cut(s)	206, 610
BshFI	GGCC	2 cut(s)	16, 414
BshNI	GGYRCC	1 cut(s)	40
BslFI	GGGAC	2 cut(s)	21, 89
BslI	CCNNNNNNNGG	4 cut(s)	99, 340, 362, 431
BsmFI	GGGAC	2 cut(s)	21, 89
BsmI	GAATGC	1 cut(s)	469
BsnI	GGCC	2 cut(s)	16, 414
Bsp143I	GATC	4 cut(s)	58, 238, 451, 586
BspACI	CCGC	1 cut(s)	384
BspANI	GGCC	2 cut(s)	16, 414
BspCNI	CTCAG	1 cut(s)	454
BspHI	TCATGA	1 cut(s)	606
BspLI	GGNNCC	4 cut(s)	17, 42, 91, 105
BspPI	GGATC	1 cut(s)	66
BspT107I	GGYRCC	1 cut(s)	40
BsrDI	GCAATG	1 cut(s)	189
BsrI	ACTGG	1 cut(s)	93
BssECI	CCNNGG	1 cut(s)	415
BssMI	GATC	4 cut(s)	58, 238, 451, 586
BssT1I	CCWWGG	1 cut(s)	415
Bst6I	CTCTTC	1 cut(s)	513
BstAPI	GCANNNNNTGC	1 cut(s)	191
BstC8I	GCNNGC	1 cut(s)	422
BstDEI	CTNAG	1 cut(s)	441
BstF5I	GGATG	3 cut(s)	352, 371, 392
BstKTI	GATC	4 cut(s)	61, 241, 454, 589
BstMBI	GATC	4 cut(s)	58, 238, 451, 586
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 191, 356, 632
BstSFI	CTRYAG	1 cut(s)	111
BstV1I	GCAGC	2 cut(s)	206, 610
BstXI	CCANNNNNNTGG	1 cut(s)	475
BsuRI	GGCC	2 cut(s)	16, 414
BtsCI	GGATG	3 cut(s)	352, 371, 392
BtsI	GCAGTG	1 cut(s)	379
BtsIMutI	CAGTG	2 cut(s)	379, 449
Cac8I	GCNNGC	1 cut(s)	422
CciI	TCATGA	1 cut(s)	606
Cfr13I	GGNCC	3 cut(s)	15, 32, 412
Csp6I	GTAC	2 cut(s)	268, 344
CviAII	CATG	5 cut(s)	181, 219, 324, 568, 607
CviQI	GTAC	2 cut(s)	268, 344
DdeI	CTNAG	1 cut(s)	441
DpnI	GATC	4 cut(s)	60, 240, 453, 588
DpnII	GATC	4 cut(s)	58, 238, 451, 586
Eam1104I	CTCTTC	1 cut(s)	513
EarI	CTCTTC	1 cut(s)	513
Eco130I	CCWWGG	1 cut(s)	415
Eco47I	GGWCC	1 cut(s)	32
EcoRI	GAATTC	1 cut(s)	391
EcoT14I	CCWWGG	1 cut(s)	415
ErhI	CCWWGG	1 cut(s)	415
FaeI	CATG	5 cut(s)	184, 222, 327, 571, 610
FalI	AAGNNNNNCTT	2 cut(s)	510, 542
FaqI	GGGAC	2 cut(s)	21, 89
FatI	CATG	5 cut(s)	180, 218, 323, 567, 606
FbaI	TGATCA	3 cut(s)	238, 451, 586
Fnu4HI	GCNGC	2 cut(s)	195, 624
FokI	GGATG	3 cut(s)	339, 378, 399
Fsp4HI	GCNGC	2 cut(s)	195, 624
FspBI	CTAG	3 cut(s)	338, 347, 416
GluI	GCNGC	2 cut(s)	195, 624
HaeIII	GGCC	2 cut(s)	16, 414
Hin1II	CATG	5 cut(s)	184, 222, 327, 571, 610
HindIII	AAGCTT	2 cut(s)	81, 686
Hpy188I	TCNGA	2 cut(s)	591, 658
Hpy188III	TCNNGA	2 cut(s)	295, 607
HpyAV	CCTTC	1 cut(s)	529
HpyCH4IV	ACGT	1 cut(s)	398
HpyCH4V	TGCA	4 cut(s)	123, 194, 330, 626
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 191, 356, 632
HpyF3I	CTNAG	1 cut(s)	441
HpySE526I	ACGT	1 cut(s)	398
Hsp92II	CATG	5 cut(s)	184, 222, 327, 571, 610
Ksp22I	TGATCA	3 cut(s)	238, 451, 586
Kzo9I	GATC	4 cut(s)	58, 238, 451, 586
LmnI	GCTCC	2 cut(s)	89, 103
LpnPI	CCDG	8 cut(s)	106, 119, 188, 238, 294, 297, 308, 369
Lsp1109I	GCAGC	2 cut(s)	206, 610
LweI	GCATC	1 cut(s)	132
MaeI	CTAG	3 cut(s)	338, 347, 416
MaeII	ACGT	1 cut(s)	398
MaeIII	GTNAC	3 cut(s)	319, 373, 529
MalI	GATC	4 cut(s)	60, 240, 453, 588
MboI	GATC	4 cut(s)	58, 238, 451, 586
MboII	GAAGA	3 cut(s)	221, 523, 530
MluCI	AATT	3 cut(s)	66, 278, 391
MmeI	TCCRAC	2 cut(s)	381, 475
MnlI	CCTC	8 cut(s)	159, 260, 334, 397, 450, 472, 514, 613
MseI	TTAA	2 cut(s)	507, 594
MspA1I	CMGCKG	1 cut(s)	359
Mva1269I	GAATGC	1 cut(s)	469
MwoI	GCNNNNNNNGC	4 cut(s)	89, 191, 356, 632
NdeII	GATC	4 cut(s)	58, 238, 451, 586
NlaIII	CATG	5 cut(s)	184, 222, 327, 571, 610
NlaIV	GGNNCC	4 cut(s)	17, 42, 91, 105
NmuCI	GTSAC	1 cut(s)	529
PagI	TCATGA	1 cut(s)	606
PctI	GAATGC	1 cut(s)	469
PflMI	CCANNNNNTGG	1 cut(s)	99
PkrI	GCNGC	2 cut(s)	196, 625
PsiI	TTATAA	1 cut(s)	680
PspN4I	GGNNCC	4 cut(s)	17, 42, 91, 105
PspPI	GGNCC	3 cut(s)	15, 32, 412
PvuII	CAGCTG	1 cut(s)	359
RsaI	GTAC	2 cut(s)	269, 345
RsaNI	GTAC	2 cut(s)	268, 344
SaqAI	TTAA	2 cut(s)	507, 594
SatI	GCNGC	2 cut(s)	195, 624
Sau3AI	GATC	4 cut(s)	58, 238, 451, 586
Sau96I	GGNCC	3 cut(s)	15, 32, 412
SetI	ASST	8 cut(s)	85, 151, 207, 345, 361, 401, 637, 690
SfaNI	GCATC	1 cut(s)	132
SfcI	CTRYAG	1 cut(s)	111
SinI	GGWCC	1 cut(s)	32
Sse9I	AATT	3 cut(s)	66, 278, 391
SsiI	CCGC	1 cut(s)	384
SspMI	CTAG	3 cut(s)	338, 347, 416
StyI	CCWWGG	1 cut(s)	415
TaiI	ACGT	1 cut(s)	401
TasI	AATT	3 cut(s)	66, 278, 391
Tru1I	TTAA	2 cut(s)	507, 594
Tru9I	TTAA	2 cut(s)	507, 594
TscAI	CASTG	2 cut(s)	386, 449
TseFI	GTSAC	1 cut(s)	529
TseI	GCWGC	2 cut(s)	194, 623
Tsp45I	GTSAC	1 cut(s)	529
TspDTI	ATGAA	2 cut(s)	531, 623
TspRI	CASTG	2 cut(s)	386, 449
Van91I	CCANNNNNTGG	1 cut(s)	99
VpaK11BI	GGWCC	1 cut(s)	32
XapI	RAATTY	1 cut(s)	391
XmaJI	CCTAGG	1 cut(s)	415
XspI	CTAG	3 cut(s)	338, 347, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.