Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004521.1

Orthogroup ID

OG0021567

Physical Location & Seq

Genomic Coordinates Forward (+)

33204 .. 34912

Gene Structure 1709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atggggatggggatcaaaatatcatccccaccccttacccgatttcagaattcgaatactggggatccccatcccccccgttgcctcctcccctcccgtttccgacatttcaccctccggcaactctctctcctgtcatgttccccccgccatgtcactcctccgacgccgcctgtcccgttctcttcccccccgttccccccctcctcccccagccgttgcgactccctcgcctcctctgacctcttccccgcctcctcccccaccacctcttcttcctacgctgacgtcgagttcgttttctcccccggccgcccgcaccggtccaactcagtttgccccattgcggccgtgacgaagtcgtcttcgctgcccggtagaggcttcgatttgacggctgccgtgacggcaagtagcgtccccgccactagcttgatgaagattccgtctggattttctgggaaagttggaaatacatcagtgggagtggagaatgagcaaggttcgaattcaaagccactgaaagagaagaccaccaaagccgaaaggcgagcgattcaggaggctcagagagtagcaaaggctgctgcgaaaggtgaggaacattctgagggttttacgacagtggaggtggatgacggggttggcggatgggttgcacgtggggatttcggtgacgacgacgcattgagtggtgaggagcttgaatttttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001541 GO:0002253 GO:0002376 GO:0002429 GO:0002682 GO:0002684 GO:0002757 GO:0002764 GO:0002768 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007272 GO:0007275 GO:0007399 GO:0007417 GO:0007548 GO:0008150 GO:0008152 GO:0008366 GO:0008406 GO:0008585 GO:0009058 GO:0009059 GO:0009987 GO:0010001 GO:0010467 GO:0014003 GO:0019538 GO:0021782 GO:0022008 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0042063 GO:0042552 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045137 GO:0046545 GO:0046660 GO:0048468 GO:0048513 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048709 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050851 GO:0050852 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

238

Amino Acids

25.11

Weight (kDa)

6.96

Isoelectric Point (pI)

56.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021567)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000019501
rosa_multiflora	Rmu_sc0004521.1_g000008 Rmu_sc0004521.1_g000009
rosa_roxburghii	Rroxscaffold_1G00063390
rosa_samantha	Rh5AG102400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	361
AatII	GACGTC	1 cut(s)	291
AciI	CCGC	8 cut(s)	148, 170, 252, 313, 317, 347, 423, 648
AclWI	GGATC	3 cut(s)	20, 59, 72
AcoI	YGGCCR	2 cut(s)	310, 348
AcsI	RAATTY	3 cut(s)	49, 508, 707
AcvI	CACGTG	1 cut(s)	662
AcyI	GRCGYC	2 cut(s)	167, 288
AfiI	CCNNNNNNNGG	2 cut(s)	346, 380
AgeI	ACCGGT	1 cut(s)	321
AgsI	TTSAA	2 cut(s)	513, 707
AluBI	AGCT	2 cut(s)	432, 703
AluI	AGCT	2 cut(s)	432, 703
AlwI	GGATC	3 cut(s)	20, 59, 72
AoxI	GGCC	2 cut(s)	310, 348
ApeKI	GCWGC	4 cut(s)	370, 398, 584, 587
ApoI	RAATTY	3 cut(s)	49, 508, 707
ArsI	GACNNNNNNTTYG	2 cut(s)	278, 310
AsiGI	ACCGGT	1 cut(s)	321
AspS9I	GGNCC	1 cut(s)	324
AsuC2I	CCSGG	2 cut(s)	309, 375
AsuHPI	GGTGA	4 cut(s)	103, 608, 686, 707
AsuII	TTCGAA	2 cut(s)	53, 506
AvaII	GGWCC	1 cut(s)	324
BamHI	GGATCC	1 cut(s)	64
BbrPI	CACGTG	1 cut(s)	662
BbsI	GAAGAC	2 cut(s)	357, 536
BbvI	GCAGC	4 cut(s)	357, 385, 571, 574
BccI	CCATC	2 cut(s)	78, 645
BceAI	ACGGC	5 cut(s)	201, 335, 386, 411, 423
BcnI	CCSGG	2 cut(s)	309, 375
BfaI	CTAG	1 cut(s)	429
BglI	GCCNNNNNGGC	1 cut(s)	407
BisI	GCNGC	7 cut(s)	170, 313, 348, 371, 399, 585, 588
BlsI	GCNGC	7 cut(s)	171, 314, 349, 372, 400, 586, 589
Bme1390I	CCNGG	2 cut(s)	309, 375
Bme18I	GGWCC	1 cut(s)	324
BmgT120I	GGNCC	1 cut(s)	324
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	2 cut(s)	309, 375
BmrI	ACTGGG	1 cut(s)	69
BmuI	ACTGGG	1 cut(s)	69
BpiI	GAAGAC	2 cut(s)	357, 536
Bpu14I	TTCGAA	2 cut(s)	53, 506
BpuMI	CCSGG	2 cut(s)	309, 375
BsaAI	YACGTR	1 cut(s)	662
BsaBI	GATNNNNATC	2 cut(s)	11, 69
BsaHI	GRCGYC	2 cut(s)	167, 288
BsaJI	CCNNGG	1 cut(s)	307
BsaWI	WCCGGW	1 cut(s)	321
BsaXI	ACNNNNNCTCC	2 cut(s)	114, 144
Bsc4I	CCNNNNNNNGG	2 cut(s)	346, 380
Bse118I	RCCGGY	1 cut(s)	321
Bse1I	ACTGG	1 cut(s)	64
Bse3DI	GCAATG	1 cut(s)	342
Bse8I	GATNNNNATC	2 cut(s)	11, 69
BseDI	CCNNGG	1 cut(s)	307
BseGI	GGATG	5 cut(s)	12, 23, 70, 640, 656
BseJI	GATNNNNATC	2 cut(s)	11, 69
BseLI	CCNNNNNNNGG	2 cut(s)	346, 380
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	3 cut(s)	345, 581, 600
BseNI	ACTGG	1 cut(s)	64
BseRI	GAGGAG	6 cut(s)	77, 150, 196, 226, 247, 713
BseX3I	CGGCCG	2 cut(s)	310, 348
BseXI	GCAGC	4 cut(s)	357, 385, 571, 574
BseYI	CCCAGC	1 cut(s)	212
Bsh1285I	CGRYCG	2 cut(s)	313, 351
BshFI	GGCC	2 cut(s)	312, 350
BshTI	ACCGGT	1 cut(s)	321
BsiEI	CGRYCG	2 cut(s)	313, 351
BsiSI	CCGG	4 cut(s)	118, 309, 322, 375
BslFI	GGGAC	2 cut(s)	161, 404
BslI	CCNNNNNNNGG	2 cut(s)	346, 380
BsmFI	GGGAC	2 cut(s)	161, 404
BsnI	GGCC	2 cut(s)	312, 350
Bsp119I	TTCGAA	2 cut(s)	53, 506
Bsp143I	GATC	2 cut(s)	12, 64
BspACI	CCGC	8 cut(s)	148, 170, 252, 313, 317, 347, 423, 648
BspANI	GGCC	2 cut(s)	312, 350
BspCNI	CTCAG	3 cut(s)	344, 580, 601
BspLI	GGNNCC	1 cut(s)	66
BspPI	GGATC	3 cut(s)	20, 59, 72
BspT104I	TTCGAA	2 cut(s)	53, 506
BsrDI	GCAATG	1 cut(s)	342
BsrFI	RCCGGY	1 cut(s)	321
BsrI	ACTGG	1 cut(s)	64
BssAI	RCCGGY	1 cut(s)	321
BssECI	CCNNGG	1 cut(s)	307
BssMI	GATC	2 cut(s)	12, 64
BssNI	GRCGYC	2 cut(s)	167, 288
Bst4CI	ACNGT	1 cut(s)	625
Bst6I	CTCTTC	3 cut(s)	190, 251, 277
BstACI	GRCGYC	2 cut(s)	167, 288
BstAPI	GCANNNNNTGC	1 cut(s)	584
BstBAI	YACGTR	1 cut(s)	662
BstBI	TTCGAA	2 cut(s)	53, 506
BstC8I	GCNNGC	2 cut(s)	317, 552
BstDEI	CTNAG	3 cut(s)	331, 567, 609
BstF5I	GGATG	5 cut(s)	12, 23, 70, 640, 656
BstKTI	GATC	2 cut(s)	15, 67
BstMBI	GATC	2 cut(s)	12, 64
BstMCI	CGRYCG	2 cut(s)	313, 351
BstMWI	GCNNNNNNNGC	2 cut(s)	407, 584
BstSCI	CCNGG	2 cut(s)	307, 373
BstV1I	GCAGC	4 cut(s)	357, 385, 571, 574
BstV2I	GAAGAC	2 cut(s)	357, 536
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BstZI	CGGCCG	2 cut(s)	310, 348
BsuRI	GGCC	2 cut(s)	312, 350
BtsCI	GGATG	5 cut(s)	12, 23, 70, 640, 656
BtsIMutI	CAGTG	3 cut(s)	486, 518, 630
Cac8I	GCNNGC	2 cut(s)	317, 552
Cfr10I	RCCGGY	1 cut(s)	321
Cfr13I	GGNCC	1 cut(s)	324
CseI	GACGC	3 cut(s)	175, 406, 692
CspAI	ACCGGT	1 cut(s)	321
CviAII	CATG	2 cut(s)	138, 152
DdeI	CTNAG	3 cut(s)	331, 567, 609
DpnI	GATC	2 cut(s)	14, 66
DpnII	GATC	2 cut(s)	12, 64
DrdI	GACNNNNNNGTC	1 cut(s)	361
DseDI	GACNNNNNNGTC	1 cut(s)	361
EaeI	YGGCCR	2 cut(s)	310, 348
EagI	CGGCCG	2 cut(s)	310, 348
Eam1104I	CTCTTC	3 cut(s)	190, 251, 277
EarI	CTCTTC	3 cut(s)	190, 251, 277
EciI	GGCGGA	1 cut(s)	663
EclXI	CGGCCG	2 cut(s)	310, 348
Eco47I	GGWCC	1 cut(s)	324
Eco52I	CGGCCG	2 cut(s)	310, 348
Eco72I	CACGTG	1 cut(s)	662
EcoRI	GAATTC	2 cut(s)	49, 508
FaeI	CATG	2 cut(s)	141, 155
FaiI	YATR	2 cut(s)	139, 153
FaqI	GGGAC	2 cut(s)	161, 404
FatI	CATG	2 cut(s)	137, 151
FauI	CCCGC	4 cut(s)	155, 259, 324, 430
Fnu4HI	GCNGC	7 cut(s)	170, 313, 348, 371, 399, 585, 588
FokI	GGATG	5 cut(s)	10, 19, 57, 647, 663
Fsp4HI	GCNGC	7 cut(s)	170, 313, 348, 371, 399, 585, 588
FspBI	CTAG	1 cut(s)	429
GluI	GCNGC	7 cut(s)	170, 313, 348, 371, 399, 585, 588
GsaI	CCCAGC	1 cut(s)	216
HaeIII	GGCC	2 cut(s)	312, 350
HapII	CCGG	4 cut(s)	118, 309, 322, 375
HgaI	GACGC	3 cut(s)	175, 406, 692
Hin1I	GRCGYC	2 cut(s)	167, 288
Hin1II	CATG	2 cut(s)	141, 155
HinfI	GANTC	3 cut(s)	224, 442, 556
HpaII	CCGG	4 cut(s)	118, 309, 322, 375
HphI	GGTGA	4 cut(s)	103, 608, 686, 707
Hpy188I	TCNGA	6 cut(s)	48, 104, 165, 241, 570, 610
Hpy188III	TCNNGA	2 cut(s)	450, 560
Hpy99I	CGWCG	4 cut(s)	169, 293, 683, 686
HpyCH4III	ACNGT	1 cut(s)	625
HpyCH4IV	ACGT	2 cut(s)	288, 661
HpyCH4V	TGCA	1 cut(s)	659
HpyF10VI	GCNNNNNNNGC	2 cut(s)	407, 584
HpyF3I	CTNAG	3 cut(s)	331, 567, 609
HpySE526I	ACGT	2 cut(s)	288, 661
Hsp92I	GRCGYC	2 cut(s)	167, 288
Hsp92II	CATG	2 cut(s)	141, 155
Kzo9I	GATC	2 cut(s)	12, 64
LmnI	GCTCC	1 cut(s)	700
Lsp1109I	GCAGC	4 cut(s)	357, 385, 571, 574
MaeI	CTAG	1 cut(s)	429
MaeII	ACGT	2 cut(s)	288, 661
MaeIII	GTNAC	4 cut(s)	154, 352, 403, 674
MalI	GATC	2 cut(s)	14, 66
MboI	GATC	2 cut(s)	12, 64
MboII	GAAGA	7 cut(s)	177, 238, 264, 267, 357, 451, 541
MflI	RGATCY	1 cut(s)	64
MluCI	AATT	3 cut(s)	49, 508, 707
MlyI	GAGTC	1 cut(s)	218
MmeI	TCCRAC	4 cut(s)	127, 188, 351, 448
MspI	CCGG	4 cut(s)	118, 309, 322, 375
MspR9I	CCNGG	2 cut(s)	309, 375
MwoI	GCNNNNNNNGC	2 cut(s)	407, 584
NciI	CCSGG	2 cut(s)	309, 375
NdeII	GATC	2 cut(s)	12, 64
NlaIII	CATG	2 cut(s)	141, 155
NlaIV	GGNNCC	1 cut(s)	66
NmuCI	GTSAC	4 cut(s)	154, 352, 403, 674
NspV	TTCGAA	2 cut(s)	53, 506
PcsI	WCGNNNNNNNCGW	3 cut(s)	288, 294, 678
PfeI	GAWTC	2 cut(s)	442, 556
PflFI	GACNNNGTC	1 cut(s)	358
PinAI	ACCGGT	1 cut(s)	321
PkrI	GCNGC	7 cut(s)	171, 314, 349, 372, 400, 586, 589
PleI	GAGTC	1 cut(s)	218
PmaCI	CACGTG	1 cut(s)	662
PmlI	CACGTG	1 cut(s)	662
PpsI	GAGTC	1 cut(s)	218
Ppu21I	YACGTR	1 cut(s)	662
PspCI	CACGTG	1 cut(s)	662
PspFI	CCCAGC	1 cut(s)	212
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	324
PsuI	RGATCY	1 cut(s)	64
PsyI	GACNNNGTC	1 cut(s)	358
SatI	GCNGC	7 cut(s)	170, 313, 348, 371, 399, 585, 588
Sau3AI	GATC	2 cut(s)	12, 64
Sau96I	GGNCC	1 cut(s)	324
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	2 cut(s)	309, 375
SetI	ASST	9 cut(s)	246, 272, 291, 434, 505, 598, 633, 664, 705
SfuI	TTCGAA	2 cut(s)	53, 506
SinI	GGWCC	1 cut(s)	324
Sse9I	AATT	3 cut(s)	49, 508, 707
SsiI	CCGC	8 cut(s)	148, 170, 252, 313, 317, 347, 423, 648
SspMI	CTAG	1 cut(s)	429
StyD4I	CCNGG	2 cut(s)	307, 373
TaaI	ACNGT	1 cut(s)	625
TaiI	ACGT	2 cut(s)	291, 664
TaqI	TCGA	4 cut(s)	53, 291, 387, 506
TasI	AATT	3 cut(s)	49, 508, 707
TauI	GCSGC	3 cut(s)	172, 315, 350
TfiI	GAWTC	2 cut(s)	442, 556
TscAI	CASTG	3 cut(s)	486, 525, 630
TseFI	GTSAC	4 cut(s)	154, 352, 403, 674
TseI	GCWGC	4 cut(s)	370, 398, 584, 587
Tsp45I	GTSAC	4 cut(s)	154, 352, 403, 674
TspDTI	ATGAA	1 cut(s)	452
TspGWI	ACGGA	1 cut(s)	435
TspRI	CASTG	3 cut(s)	486, 525, 630
Tth111I	GACNNNGTC	1 cut(s)	358
VpaK11BI	GGWCC	1 cut(s)	324
XapI	RAATTY	3 cut(s)	49, 508, 707
XspI	CTAG	1 cut(s)	429
ZraI	GACGTC	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.