Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004521.1

Orthogroup ID

OG0021567

Physical Location & Seq

Genomic Coordinates Forward (+)

40658 .. 42785

Gene Structure 2128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

atgactccttcacctactccagaatcctcaagcgctcttggcgcgcgacctcacctctccacttctcgcgcaccaaccctcttctcagctatttcgactccggctctctcctccccaactgcatcgtcgtccccggagtcagattttcggcaatttagagaggatggagtcgcggaccgggagctctattactggctagtctgtgaacttcatacctttgccgccgatcagggccgtcccgacgtagaagcgtgcggaggtgcactgattgcgccacgtgtctctgaaattgtatgtgtacttccactgccgtcccgtcgcctcctcccctcccatctccgacatttccccctccggcaactctctctcccgtcatgttccccccgccatgtcactcctccgacgccgcctgtcccgttcccccccgcctcccccggccgtcgcgactccctcgcctcctctgacatcttccccgcctcctcccccaccacctcttcttcctacgctgacgccaagttcattttctcccccggccgcccgctccggtccaactcagttctccccattgcggccgtgacgaagtcgtcttcactgctcggtagaggcttcgatttgacggctgccgagacggcaagtagcgtccccgccactagcttgatgaagattccgtctagattttctgtgaaaaatgcaaggaaagttggaaatgcatcagtgggagtggagaatgagcaaggttcgaattcaaagccactgaaagagaagaccaccaaagcagaaaggcgagcaattcaggaggctcagcgagtagcaaaggctgctgcgaaaggtgaggaacattatgagggttttacgacagcggaggtggatgactgggttggcggatgggttgcacgtggggatttcggcgacgacgacgcattgagtggtaaggagcttgaatttttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001541 GO:0002253 GO:0002376 GO:0002429 GO:0002682 GO:0002684 GO:0002757 GO:0002764 GO:0002768 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007272 GO:0007275 GO:0007399 GO:0007417 GO:0007548 GO:0008150 GO:0008152 GO:0008366 GO:0008406 GO:0008585 GO:0009058 GO:0009059 GO:0009987 GO:0010001 GO:0010467 GO:0014003 GO:0019538 GO:0021782 GO:0022008 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0042063 GO:0042552 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045137 GO:0046545 GO:0046660 GO:0048468 GO:0048513 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048709 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050851 GO:0050852 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

316

Amino Acids

33.71

Weight (kDa)

7.72

Isoelectric Point (pI)

61.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021567)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000019501
rosa_multiflora	Rmu_sc0004521.1_g000008 Rmu_sc0004521.1_g000009
rosa_roxburghii	Rroxscaffold_1G00063390
rosa_samantha	Rh5AG102400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	583
AccBSI	CCGCTC	1 cut(s)	541
AccII	CGCG	5 cut(s)	44, 46, 69, 173, 444
AcoI	YGGCCR	3 cut(s)	436, 532, 570
AcsI	RAATTY	2 cut(s)	742, 941
AcvI	CACGTG	2 cut(s)	278, 896
AcyI	GRCGYC	2 cut(s)	404, 510
AfaI	GTAC	1 cut(s)	300
AfeI	AGCGCT	1 cut(s)	34
AfiI	CCNNNNNNNGG	1 cut(s)	568
AflIII	ACRYGT	1 cut(s)	277
AgsI	TTSAA	2 cut(s)	747, 941
AjuI	GAANNNNNNNTTGG	2 cut(s)	506, 538
AluBI	AGCT	4 cut(s)	89, 184, 654, 937
AluI	AGCT	4 cut(s)	89, 184, 654, 937
Alw21I	GWGCWC	2 cut(s)	186, 265
Alw26I	GTCTC	2 cut(s)	286, 620
Alw44I	GTGCAC	1 cut(s)	261
Aor51HI	AGCGCT	1 cut(s)	34
AoxI	GGCC	4 cut(s)	232, 436, 532, 570
ApaLI	GTGCAC	1 cut(s)	261
ApeKI	GCWGC	3 cut(s)	620, 818, 821
ApoI	RAATTY	2 cut(s)	742, 941
AspLEI	GCGC	5 cut(s)	35, 44, 46, 71, 274
AspS9I	GGNCC	3 cut(s)	175, 232, 546
AsuC2I	CCSGG	4 cut(s)	134, 179, 435, 531
AsuHPI	GGTGA	3 cut(s)	3, 44, 842
AsuII	TTCGAA	1 cut(s)	740
AvaII	GGWCC	2 cut(s)	175, 546
BaeGI	GKGCMC	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	186
BarI	GAAGNNNNNNTAC	2 cut(s)	285, 317
BbrPI	CACGTG	2 cut(s)	278, 896
BbsI	GAAGAC	2 cut(s)	579, 770
Bbv12I	GWGCWC	2 cut(s)	186, 265
BbvI	GCAGC	3 cut(s)	607, 805, 808
BccI	CCATC	3 cut(s)	158, 342, 879
BceAI	ACGGC	6 cut(s)	219, 295, 423, 557, 633, 645
BcnI	CCSGG	4 cut(s)	134, 179, 435, 531
BcoDI	GTCTC	2 cut(s)	286, 620
BfaI	CTAG	3 cut(s)	197, 651, 672
BfoI	RGCGCY	1 cut(s)	36
BglI	GCCNNNNNGGC	1 cut(s)	629
BisI	GCNGC	7 cut(s)	222, 407, 535, 570, 621, 819, 822
BlpI	GCTNAGC	1 cut(s)	801
BlsI	GCNGC	7 cut(s)	223, 408, 536, 571, 622, 820, 823
Bme1390I	CCNGG	4 cut(s)	134, 179, 435, 531
Bme18I	GGWCC	2 cut(s)	175, 546
BmgT120I	GGNCC	3 cut(s)	175, 232, 546
BmrFI	CCNGG	4 cut(s)	134, 179, 435, 531
BmrI	ACTGGG	1 cut(s)	883
BmsI	GCATC	2 cut(s)	131, 719
BmuI	ACTGGG	1 cut(s)	883
BpiI	GAAGAC	2 cut(s)	579, 770
Bpu1102I	GCTNAGC	1 cut(s)	801
Bpu14I	TTCGAA	1 cut(s)	740
BpuEI	CTTGAG	1 cut(s)	13
BpuMI	CCSGG	4 cut(s)	134, 179, 435, 531
BsaAI	YACGTR	2 cut(s)	278, 896
BsaHI	GRCGYC	2 cut(s)	404, 510
BsaJI	CCNNGG	3 cut(s)	132, 433, 529
BsaWI	WCCGGW	1 cut(s)	543
BsaXI	ACNNNNNCTCC	2 cut(s)	351, 381
Bsc4I	CCNNNNNNNGG	1 cut(s)	568
Bse1I	ACTGG	2 cut(s)	197, 878
Bse3DI	GCAATG	1 cut(s)	564
BseDI	CCNNGG	3 cut(s)	132, 433, 529
BseGI	GGATG	3 cut(s)	169, 874, 890
BseLI	CCNNNNNNNGG	1 cut(s)	568
BseMI	GCAATG	1 cut(s)	564
BseMII	CTCAG	3 cut(s)	99, 567, 815
BseNI	ACTGG	2 cut(s)	197, 878
BsePI	GCGCGC	1 cut(s)	42
BseRI	GAGGAG	5 cut(s)	100, 314, 387, 448, 469
BseSI	GKGCMC	1 cut(s)	265
BseX3I	CGGCCG	3 cut(s)	436, 532, 570
BseXI	GCAGC	3 cut(s)	607, 805, 808
Bsh1236I	CGCG	5 cut(s)	44, 46, 69, 173, 444
Bsh1285I	CGRYCG	3 cut(s)	439, 535, 573
BshFI	GGCC	4 cut(s)	234, 438, 534, 572
BsiEI	CGRYCG	3 cut(s)	439, 535, 573
BsiHKAI	GWGCWC	2 cut(s)	186, 265
BsiSI	CCGG	7 cut(s)	101, 134, 178, 355, 435, 531, 544
BslFI	GGGAC	5 cut(s)	115, 222, 298, 398, 626
BslI	CCNNNNNNNGG	1 cut(s)	568
BsmAI	GTCTC	2 cut(s)	286, 620
BsmBI	CGTCTC	1 cut(s)	620
BsmFI	GGGAC	5 cut(s)	115, 222, 298, 398, 626
BsnI	GGCC	4 cut(s)	234, 438, 534, 572
Bsp119I	TTCGAA	1 cut(s)	740
Bsp1286I	GDGCHC	2 cut(s)	186, 265
Bsp143I	GATC	1 cut(s)	226
Bsp1720I	GCTNAGC	1 cut(s)	801
Bsp68I	TCGCGA	1 cut(s)	444
BspANI	GGCC	4 cut(s)	234, 438, 534, 572
BspCNI	CTCAG	3 cut(s)	98, 566, 814
BspFNI	CGCG	5 cut(s)	44, 46, 69, 173, 444
BspT104I	TTCGAA	1 cut(s)	740
BsrBI	CCGCTC	1 cut(s)	541
BsrDI	GCAATG	1 cut(s)	564
BsrI	ACTGG	2 cut(s)	197, 878
BssECI	CCNNGG	3 cut(s)	132, 433, 529
BssHII	GCGCGC	1 cut(s)	42
BssMI	GATC	1 cut(s)	226
BssNI	GRCGYC	2 cut(s)	404, 510
Bst6I	CTCTTC	2 cut(s)	86, 499
BstACI	GRCGYC	2 cut(s)	404, 510
BstAPI	GCANNNNNTGC	2 cut(s)	269, 818
BstBAI	YACGTR	2 cut(s)	278, 896
BstBI	TTCGAA	1 cut(s)	740
BstC8I	GCNNGC	4 cut(s)	44, 253, 539, 786
BstDEI	CTNAG	3 cut(s)	85, 553, 801
BstF5I	GGATG	3 cut(s)	169, 874, 890
BstFNI	CGCG	5 cut(s)	44, 46, 69, 173, 444
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	5 cut(s)	35, 44, 46, 71, 274
BstKTI	GATC	1 cut(s)	229
BstMAI	GTCTC	2 cut(s)	286, 620
BstMBI	GATC	1 cut(s)	226
BstMCI	CGRYCG	3 cut(s)	439, 535, 573
BstMWI	GCNNNNNNNGC	5 cut(s)	39, 41, 269, 629, 818
BstSCI	CCNGG	4 cut(s)	132, 177, 433, 529
BstSLI	GKGCMC	1 cut(s)	265
BstUI	CGCG	5 cut(s)	44, 46, 69, 173, 444
BstV1I	GCAGC	3 cut(s)	607, 805, 808
BstV2I	GAAGAC	2 cut(s)	579, 770
BstZI	CGGCCG	3 cut(s)	436, 532, 570
BsuRI	GGCC	4 cut(s)	234, 438, 534, 572
BtsCI	GGATG	3 cut(s)	169, 874, 890
BtsI	GCAGTG	2 cut(s)	305, 590
BtsIMutI	CAGTG	5 cut(s)	263, 305, 590, 720, 752
BtuMI	TCGCGA	1 cut(s)	444
Cac8I	GCNNGC	4 cut(s)	44, 253, 539, 786
CfoI	GCGC	5 cut(s)	35, 44, 46, 71, 274
Cfr13I	GGNCC	3 cut(s)	175, 232, 546
CpoI	CGGWCCG	1 cut(s)	175
CseI	GACGC	4 cut(s)	412, 518, 628, 926
Csp6I	GTAC	1 cut(s)	299
CspI	CGGWCCG	1 cut(s)	175
CviAII	CATG	2 cut(s)	375, 389
CviQI	GTAC	1 cut(s)	299
DdeI	CTNAG	3 cut(s)	85, 553, 801
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
DrdI	GACNNNNNNGTC	1 cut(s)	583
DseDI	GACNNNNNNGTC	1 cut(s)	583
EaeI	YGGCCR	3 cut(s)	436, 532, 570
EagI	CGGCCG	3 cut(s)	436, 532, 570
Eam1104I	CTCTTC	2 cut(s)	86, 499
EarI	CTCTTC	2 cut(s)	86, 499
EciI	GGCGGA	1 cut(s)	897
Ecl136II	GAGCTC	1 cut(s)	184
EclXI	CGGCCG	3 cut(s)	436, 532, 570
Eco24I	GRGCYC	1 cut(s)	186
Eco47I	GGWCC	2 cut(s)	175, 546
Eco47III	AGCGCT	1 cut(s)	34
Eco52I	CGGCCG	3 cut(s)	436, 532, 570
Eco53kI	GAGCTC	1 cut(s)	184
Eco72I	CACGTG	2 cut(s)	278, 896
EcoICRI	GAGCTC	1 cut(s)	184
EcoRI	GAATTC	1 cut(s)	742
EcoT22I	ATGCAT	1 cut(s)	712
EcoT38I	GRGCYC	1 cut(s)	186
Esp3I	CGTCTC	1 cut(s)	620
FaeI	CATG	2 cut(s)	378, 392
FaiI	YATR	5 cut(s)	213, 295, 376, 390, 843
FaqI	GGGAC	5 cut(s)	115, 222, 298, 398, 626
FatI	CATG	2 cut(s)	374, 388
FauI	CCCGC	5 cut(s)	392, 433, 481, 546, 652
Fnu4HI	GCNGC	7 cut(s)	222, 407, 535, 570, 621, 819, 822
FokI	GGATG	3 cut(s)	176, 881, 897
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	7 cut(s)	222, 407, 535, 570, 621, 819, 822
FspBI	CTAG	3 cut(s)	197, 651, 672
GlaI	GCGC	5 cut(s)	34, 43, 45, 70, 273
GluI	GCNGC	7 cut(s)	222, 407, 535, 570, 621, 819, 822
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	4 cut(s)	234, 438, 534, 572
HapII	CCGG	7 cut(s)	101, 134, 178, 355, 435, 531, 544
HgaI	GACGC	4 cut(s)	412, 518, 628, 926
HhaI	GCGC	5 cut(s)	35, 44, 46, 71, 274
Hin1I	GRCGYC	2 cut(s)	404, 510
Hin1II	CATG	2 cut(s)	378, 392
Hin6I	GCGC	5 cut(s)	33, 42, 44, 69, 272
HinP1I	GCGC	5 cut(s)	33, 42, 44, 69, 272
HinfI	GANTC	7 cut(s)	4, 23, 97, 137, 168, 446, 664
HpaII	CCGG	7 cut(s)	101, 134, 178, 355, 435, 531, 544
HphI	GGTGA	3 cut(s)	3, 44, 842
Hpy166II	GTNNAC	3 cut(s)	206, 263, 299
Hpy188I	TCNGA	5 cut(s)	142, 286, 341, 402, 463
Hpy188III	TCNNGA	5 cut(s)	20, 239, 443, 672, 794
Hpy8I	GTNNAC	3 cut(s)	206, 263, 299
Hpy99I	CGWCG	8 cut(s)	130, 245, 321, 406, 444, 914, 917, 920
HpyAV	CCTTC	1 cut(s)	18
HpyCH4IV	ACGT	3 cut(s)	243, 277, 895
HpyCH4V	TGCA	5 cut(s)	122, 263, 692, 710, 893
HpyF10VI	GCNNNNNNNGC	5 cut(s)	39, 41, 269, 629, 818
HpyF3I	CTNAG	3 cut(s)	85, 553, 801
HpySE526I	ACGT	3 cut(s)	243, 277, 895
Hsp92I	GRCGYC	2 cut(s)	404, 510
Hsp92II	CATG	2 cut(s)	378, 392
HspAI	GCGC	5 cut(s)	33, 42, 44, 69, 272
Kzo9I	GATC	1 cut(s)	226
LmnI	GCTCC	3 cut(s)	181, 546, 934
Lsp1109I	GCAGC	3 cut(s)	607, 805, 808
LweI	GCATC	2 cut(s)	131, 719
MaeI	CTAG	3 cut(s)	197, 651, 672
MaeII	ACGT	3 cut(s)	243, 277, 895
MaeIII	GTNAC	2 cut(s)	391, 574
MalI	GATC	1 cut(s)	228
MbiI	CCGCTC	1 cut(s)	541
MboI	GATC	1 cut(s)	226
MboII	GAAGA	7 cut(s)	73, 460, 486, 489, 579, 673, 775
MhlI	GDGCHC	2 cut(s)	186, 265
MluCI	AATT	5 cut(s)	152, 288, 742, 789, 941
MlyI	GAGTC	4 cut(s)	91, 146, 177, 440
MmeI	TCCRAC	4 cut(s)	364, 425, 573, 682
Mph1103I	ATGCAT	1 cut(s)	712
MspA1I	CMGCKG	1 cut(s)	860
MspI	CCGG	7 cut(s)	101, 134, 178, 355, 435, 531, 544
MspR9I	CCNGG	4 cut(s)	134, 179, 435, 531
MvnI	CGCG	5 cut(s)	44, 46, 69, 173, 444
MwoI	GCNNNNNNNGC	5 cut(s)	39, 41, 269, 629, 818
NciI	CCSGG	4 cut(s)	134, 179, 435, 531
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	2 cut(s)	378, 392
NmeAIII	GCCGAG	1 cut(s)	649
NmuCI	GTSAC	2 cut(s)	391, 574
NruI	TCGCGA	1 cut(s)	444
NsiI	ATGCAT	1 cut(s)	712
NspV	TTCGAA	1 cut(s)	740
PauI	GCGCGC	1 cut(s)	42
PcsI	WCGNNNNNNNCGW	1 cut(s)	912
PfeI	GAWTC	2 cut(s)	23, 664
PflFI	GACNNNGTC	1 cut(s)	580
PkrI	GCNGC	7 cut(s)	223, 408, 536, 571, 622, 820, 823
PleI	GAGTC	4 cut(s)	91, 145, 176, 440
PmaCI	CACGTG	2 cut(s)	278, 896
PmlI	CACGTG	2 cut(s)	278, 896
PpsI	GAGTC	4 cut(s)	91, 145, 176, 440
Ppu21I	YACGTR	2 cut(s)	278, 896
Psp124BI	GAGCTC	1 cut(s)	186
PspCI	CACGTG	2 cut(s)	278, 896
PspPI	GGNCC	3 cut(s)	175, 232, 546
PsyI	GACNNNGTC	1 cut(s)	580
PteI	GCGCGC	1 cut(s)	42
RruI	TCGCGA	1 cut(s)	444
RsaI	GTAC	1 cut(s)	300
RsaNI	GTAC	1 cut(s)	299
Rsr2I	CGGWCCG	1 cut(s)	175
RsrII	CGGWCCG	1 cut(s)	175
SacI	GAGCTC	1 cut(s)	186
SatI	GCNGC	7 cut(s)	222, 407, 535, 570, 621, 819, 822
Sau3AI	GATC	1 cut(s)	226
Sau96I	GGNCC	3 cut(s)	175, 232, 546
SchI	GAGTC	4 cut(s)	91, 146, 177, 440
ScrFI	CCNGG	4 cut(s)	134, 179, 435, 531
SduI	GDGCHC	2 cut(s)	186, 265
SfaNI	GCATC	2 cut(s)	131, 719
SfuI	TTCGAA	1 cut(s)	740
SinI	GGWCC	2 cut(s)	175, 546
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
Sse9I	AATT	5 cut(s)	152, 288, 742, 789, 941
SspMI	CTAG	3 cut(s)	197, 651, 672
SstI	GAGCTC	1 cut(s)	186
StyD4I	CCNGG	4 cut(s)	132, 177, 433, 529
TaiI	ACGT	3 cut(s)	246, 280, 898
TaqI	TCGA	3 cut(s)	95, 609, 740
TasI	AATT	5 cut(s)	152, 288, 742, 789, 941
TatI	WGTACW	1 cut(s)	298
TauI	GCSGC	4 cut(s)	224, 409, 537, 572
TfiI	GAWTC	2 cut(s)	23, 664
TscAI	CASTG	5 cut(s)	270, 312, 597, 720, 759
TseFI	GTSAC	2 cut(s)	391, 574
TseI	GCWGC	3 cut(s)	620, 818, 821
Tsp45I	GTSAC	2 cut(s)	391, 574
TspDTI	ATGAA	3 cut(s)	200, 508, 674
TspGWI	ACGGA	1 cut(s)	657
TspRI	CASTG	5 cut(s)	270, 312, 597, 720, 759
Tth111I	GACNNNGTC	1 cut(s)	580
VneI	GTGCAC	1 cut(s)	261
VpaK11BI	GGWCC	2 cut(s)	175, 546
XapI	RAATTY	2 cut(s)	742, 941
XbaI	TCTAGA	1 cut(s)	671
XspI	CTAG	3 cut(s)	197, 651, 672
Zsp2I	ATGCAT	1 cut(s)	712

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.