Rmu_sc0004612.1_g000012

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004612.1
OG0031310
Physical Location & Seq
Forward (+)
49367 .. 50307
941 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004612.1_g000012.1.cds

Sequence Viewer

Length: 846 bp
atggtggagactggagagattgaagtgagctatgtttctccccagaatatagaaattggttctgctctgaatcacttgtgttctgaccctcatgatggacaaattagtctacgcccttgtgcatacagtactaccggctttaagggacttaaagctatgaagttcgtggatgttcaagtggcgggacaaattcttgagtgcttcatgtccaactgtccacttcttgaacgattatcgatgcgttattctaagaagttggagaagctaagagttgttggtccatcaattgcattgaagtacttggacatacatatgtgttcgaagatcagagacattgagatttatgattcaaaccttgtttcacttagttatgccggacataagttgctagaggttcttaaaatgcgtccacccaagctcaacaagaagaattttgtatctcctatgttagtaaatctcaggcatttggaattaagctttgaagtagatgatgtttgctgtgttcctcaattagcttcgttcattctggaatctccttgctttcacgaactcgtgttgaagttgcaacatttttatgtatccaatagaagagaaggaatagaaatcaagcaagctgaaaaatactcacatcgttacctcaaaatagttgaagtagaagagtgttttggtcgctcaagtgattttgaacttgccatctatttgatagagaatgctattgatctcgaaaaacttgttctccaagactcagttgtttattctcatagtcgtaagcatattgaagaagtgaagagacatgctaggctgaagcttgaagggagagtgcctacaactacgaaactcgtataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

281

Amino Acids

32.2

Weight (kDa)

7.6

Isoelectric Point (pI)

53.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031310)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004612.1_g000012
rosa_samantha Rh4CG338200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 105
AccI GTMKAC 1 cut(s) 109
AciI CCGC 1 cut(s) 182
AcsI RAATTY 2 cut(s) 189, 430
AcuI CTGAAG 1 cut(s) 824
AfaI GTAC 2 cut(s) 130, 299
AfiI CCNNNNNNNGG 1 cut(s) 95
AjuI GAANNNNNNNTTGG 2 cut(s) 648, 680
AluBI AGCT 8 cut(s) 30, 155, 265, 418, 477, 515, 614, 808
AluI AGCT 8 cut(s) 30, 155, 265, 418, 477, 515, 614, 808
Alw26I GTCTC 3 cut(s) 2, 324, 784
ApoI RAATTY 2 cut(s) 189, 430
AspS9I GGNCC 1 cut(s) 278
AsuII TTCGAA 1 cut(s) 320
AvaII GGWCC 1 cut(s) 278
BauI CACGAG 1 cut(s) 551
BccI CCATC 3 cut(s) 89, 289, 701
BciVI GTATCC 1 cut(s) 589
BcoDI GTCTC 3 cut(s) 2, 324, 784
BfaI CTAG 2 cut(s) 389, 798
BfuI GTATCC 1 cut(s) 589
BmcAI AGTACT 2 cut(s) 130, 299
Bme18I GGWCC 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 278
BmsI GCATC 1 cut(s) 228
BpmI CTGGAG 1 cut(s) 33
Bpu14I TTCGAA 1 cut(s) 320
BpuEI CTTGAG 2 cut(s) 215, 658
Bsa29I ATCGAT 1 cut(s) 236
BsaXI ACNNNNNCTCC 2 cut(s) 720, 750
Bsc4I CCNNNNNNNGG 1 cut(s) 95
Bse118I RCCGGY 1 cut(s) 134
Bse1I ACTGG 1 cut(s) 16
BseCI ATCGAT 1 cut(s) 236
BseGI GGATG 1 cut(s) 175
BseLI CCNNNNNNNGG 1 cut(s) 95
BseMII CTCAG 2 cut(s) 472, 759
BseNI ACTGG 1 cut(s) 16
BshVI ATCGAT 1 cut(s) 236
BsiSI CCGG 2 cut(s) 135, 375
BslFI GGGAC 2 cut(s) 159, 198
BslI CCNNNNNNNGG 1 cut(s) 95
BsmAI GTCTC 3 cut(s) 2, 324, 784
BsmFI GGGAC 2 cut(s) 159, 198
BsmI GAATGC 1 cut(s) 715
Bsp119I TTCGAA 1 cut(s) 320
Bsp143I GATC 2 cut(s) 324, 718
BspACI CCGC 1 cut(s) 182
BspCNI CTCAG 2 cut(s) 471, 758
BspDI ATCGAT 1 cut(s) 236
BspHI TCATGA 1 cut(s) 91
BspT104I TTCGAA 1 cut(s) 320
BsrFI RCCGGY 1 cut(s) 134
BsrI ACTGG 1 cut(s) 16
BssAI RCCGGY 1 cut(s) 134
BssMI GATC 2 cut(s) 324, 718
BssSI CACGAG 1 cut(s) 551
Bst2BI CACGAG 1 cut(s) 551
Bst4CI ACNGT 2 cut(s) 128, 215
Bst6I CTCTTC 3 cut(s) 583, 651, 782
BstBI TTCGAA 1 cut(s) 320
BstC8I GCNNGC 1 cut(s) 612
BstDEI CTNAG 5 cut(s) 249, 266, 365, 458, 745
BstF5I GGATG 1 cut(s) 175
BstKTI GATC 2 cut(s) 327, 721
BstMAI GTCTC 3 cut(s) 2, 324, 784
BstMBI GATC 2 cut(s) 324, 718
BstNSI RCATGY 1 cut(s) 797
Bsu15I ATCGAT 1 cut(s) 236
BsuI GTATCC 1 cut(s) 589
BsuTUI ATCGAT 1 cut(s) 236
BtsCI GGATG 1 cut(s) 175
Cac8I GCNNGC 1 cut(s) 612
CciI TCATGA 1 cut(s) 91
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 1 cut(s) 278
ClaI ATCGAT 1 cut(s) 236
CseI GACGC 1 cut(s) 395
Csp6I GTAC 2 cut(s) 129, 298
CviAII CATG 3 cut(s) 92, 205, 794
CviQI GTAC 2 cut(s) 129, 298
DdeI CTNAG 5 cut(s) 249, 266, 365, 458, 745
DpnI GATC 2 cut(s) 326, 720
DpnII GATC 2 cut(s) 324, 718
DrdI GACNNNNNNGTC 1 cut(s) 105
DseDI GACNNNNNNGTC 1 cut(s) 105
Eam1104I CTCTTC 3 cut(s) 583, 651, 782
EarI CTCTTC 3 cut(s) 583, 651, 782
Eco47I GGWCC 1 cut(s) 278
Eco57I CTGAAG 1 cut(s) 824
FaeI CATG 3 cut(s) 95, 208, 797
FaqI GGGAC 2 cut(s) 159, 198
FatI CATG 3 cut(s) 91, 204, 793
FauI CCCGC 1 cut(s) 175
FauNDI CATATG 1 cut(s) 312
FblI GTMKAC 1 cut(s) 109
FokI GGATG 1 cut(s) 182
FspBI CTAG 2 cut(s) 389, 798
GsuI CTGGAG 1 cut(s) 33
HapII CCGG 2 cut(s) 135, 375
HgaI GACGC 1 cut(s) 395
Hin1II CATG 3 cut(s) 95, 208, 797
HindIII AAGCTT 2 cut(s) 475, 806
HinfI GANTC 4 cut(s) 70, 347, 530, 743
HpaII CCGG 2 cut(s) 135, 375
Hpy166II GTNNAC 3 cut(s) 110, 218, 410
Hpy188I TCNGA 3 cut(s) 69, 85, 329
Hpy188III TCNNGA 6 cut(s) 92, 194, 224, 527, 545, 722
Hpy8I GTNNAC 3 cut(s) 110, 218, 410
HpyAV CCTTC 2 cut(s) 587, 806
HpyCH4III ACNGT 2 cut(s) 128, 215
HpyCH4V TGCA 3 cut(s) 122, 290, 565
HpyF3I CTNAG 5 cut(s) 249, 266, 365, 458, 745
Hsp92II CATG 3 cut(s) 95, 208, 797
Kzo9I GATC 2 cut(s) 324, 718
LpnPI CCDG 5 cut(s) 56, 148, 388, 445, 512
LweI GCATC 1 cut(s) 228
MaeI CTAG 2 cut(s) 389, 798
MaeIII GTNAC 1 cut(s) 632
MalI GATC 2 cut(s) 326, 720
MboI GATC 2 cut(s) 324, 718
MboII GAAGA 6 cut(s) 334, 439, 600, 668, 791, 799
MfeI CAATTG 1 cut(s) 285
MluCI AATT 7 cut(s) 54, 102, 189, 285, 430, 470, 509
MlyI GAGTC 1 cut(s) 737
MmeI TCCRAC 2 cut(s) 234, 237
MnlI CCTC 4 cut(s) 99, 385, 516, 647
MseI TTAA 4 cut(s) 141, 150, 399, 473
MslI CAYNNNNRTG 2 cut(s) 311, 573
MspI CCGG 2 cut(s) 135, 375
MunI CAATTG 1 cut(s) 285
Mva1269I GAATGC 1 cut(s) 715
NdeI CATATG 1 cut(s) 312
NdeII GATC 2 cut(s) 324, 718
NlaIII CATG 3 cut(s) 95, 208, 797
NspI RCATGY 1 cut(s) 797
NspV TTCGAA 1 cut(s) 320
PagI TCATGA 1 cut(s) 91
PctI GAATGC 1 cut(s) 715
PfeI GAWTC 3 cut(s) 70, 347, 530
PleI GAGTC 1 cut(s) 737
PpsI GAGTC 1 cut(s) 737
PspPI GGNCC 1 cut(s) 278
RsaI GTAC 2 cut(s) 130, 299
RsaNI GTAC 2 cut(s) 129, 298
RseI CAYNNNNRTG 2 cut(s) 311, 573
SaqAI TTAA 4 cut(s) 141, 150, 399, 473
Sau3AI GATC 2 cut(s) 324, 718
Sau96I GGNCC 1 cut(s) 278
ScaI AGTACT 2 cut(s) 130, 299
SchI GAGTC 1 cut(s) 737
SfaNI GCATC 1 cut(s) 228
SfuI TTCGAA 1 cut(s) 320
SinI GGWCC 1 cut(s) 278
SmiMI CAYNNNNRTG 2 cut(s) 311, 573
SmlI CTYRAG 2 cut(s) 194, 673
SmoI CTYRAG 2 cut(s) 194, 673
Sse9I AATT 7 cut(s) 54, 102, 189, 285, 430, 470, 509
SsiI CCGC 1 cut(s) 182
SspMI CTAG 2 cut(s) 389, 798
TaaI ACNGT 2 cut(s) 128, 215
TaqI TCGA 3 cut(s) 236, 320, 723
TasI AATT 7 cut(s) 54, 102, 189, 285, 430, 470, 509
TatI WGTACW 2 cut(s) 128, 297
TfiI GAWTC 3 cut(s) 70, 347, 530
Tru1I TTAA 4 cut(s) 141, 150, 399, 473
Tru9I TTAA 4 cut(s) 141, 150, 399, 473
TspDTI ATGAA 3 cut(s) 173, 193, 511
VpaK11BI GGWCC 1 cut(s) 278
XapI RAATTY 2 cut(s) 189, 430
XceI RCATGY 1 cut(s) 797
XmiI GTMKAC 1 cut(s) 109
XspI CTAG 2 cut(s) 389, 798
ZrmI AGTACT 2 cut(s) 130, 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.