Rh4CG338200

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Reverse (-)
59798554 .. 59799054
501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG338200.1

Sequence Viewer

Length: 441 bp
ATGGTGGAGACTGGAGAGATTGAAGTGAGCTATGTTTCTCCCCAGAATATAGAAATTGGTTCTGCTCTGAACCACTTGTGTTCTGACCCTCATGTTGTACCAATTAGTCTACGCCCTTGTGCATACAGTACTACTGGCTTTAAGGGACTTAAAGCTATGAAGTTCGTGGATGTTCAAGTGGCGGGACAAATTCTTGAGTGCTTCATGTCCAACTGTCCACTTCTTGAACGATTATCGATGCGTTATTCTAAGAAGTTGGAGAAGCTAAGAGTTGTTGGTCCATCAATTGCATTGAAGTACTTGGACATACATATGTGTTCGAAGATCAGAGACATTGAGATTTATGATTCAAACCTTGTTTCACTTAGTTATGCTGGATATGAGATAATTAAGTTGGTTCTCAGGAATGTACGCCTTCTTGTTGAGGTATCCATTTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

146

Amino Acids

16.35

Weight (kDa)

7.62

Isoelectric Point (pI)

42.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 36 - 138 9.3e-14 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 43 - 114 7.3e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0031310)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004612.1_g000012
rosa_samantha Rh4CG338200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 109
AciI CCGC 1 cut(s) 182
AcsI RAATTY 1 cut(s) 189
AfaI GTAC 4 cut(s) 99, 130, 299, 411
AgsI TTSAA 5 cut(s) 23, 176, 227, 295, 351
AluBI AGCT 3 cut(s) 30, 155, 265
AluI AGCT 3 cut(s) 30, 155, 265
Alw26I GTCTC 2 cut(s) 2, 324
ApoI RAATTY 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 278
AsuII TTCGAA 1 cut(s) 320
AvaII GGWCC 1 cut(s) 278
BccI CCATC 1 cut(s) 289
BciVI GTATCC 1 cut(s) 439
BcoDI GTCTC 2 cut(s) 2, 324
BfuI GTATCC 1 cut(s) 439
BmcAI AGTACT 2 cut(s) 130, 299
Bme18I GGWCC 1 cut(s) 278
BmgT120I GGNCC 1 cut(s) 278
BmsI GCATC 1 cut(s) 228
BpmI CTGGAG 1 cut(s) 33
Bpu14I TTCGAA 1 cut(s) 320
BpuEI CTTGAG 1 cut(s) 215
Bsa29I ATCGAT 1 cut(s) 236
Bse1I ACTGG 2 cut(s) 16, 139
BseCI ATCGAT 1 cut(s) 236
BseGI GGATG 1 cut(s) 175
BseMII CTCAG 1 cut(s) 415
BseNI ACTGG 2 cut(s) 16, 139
BshVI ATCGAT 1 cut(s) 236
BslFI GGGAC 2 cut(s) 159, 198
BsmAI GTCTC 2 cut(s) 2, 324
BsmFI GGGAC 2 cut(s) 159, 198
Bsp119I TTCGAA 1 cut(s) 320
Bsp143I GATC 1 cut(s) 324
BspACI CCGC 1 cut(s) 182
BspCNI CTCAG 1 cut(s) 414
BspDI ATCGAT 1 cut(s) 236
BspT104I TTCGAA 1 cut(s) 320
BsrI ACTGG 2 cut(s) 16, 139
BssMI GATC 1 cut(s) 324
Bst4CI ACNGT 2 cut(s) 128, 215
BstBI TTCGAA 1 cut(s) 320
BstDEI CTNAG 4 cut(s) 249, 266, 365, 401
BstF5I GGATG 1 cut(s) 175
BstKTI GATC 1 cut(s) 327
BstMAI GTCTC 2 cut(s) 2, 324
BstMBI GATC 1 cut(s) 324
Bsu15I ATCGAT 1 cut(s) 236
BsuI GTATCC 1 cut(s) 439
BsuTUI ATCGAT 1 cut(s) 236
BtsCI GGATG 1 cut(s) 175
Cfr13I GGNCC 1 cut(s) 278
ClaI ATCGAT 1 cut(s) 236
Csp6I GTAC 4 cut(s) 98, 129, 298, 410
CviAII CATG 2 cut(s) 92, 205
CviJI RGCY 4 cut(s) 30, 138, 155, 265
CviKI_1 RGCY 4 cut(s) 30, 138, 155, 265
CviQI GTAC 4 cut(s) 98, 129, 298, 410
DdeI CTNAG 4 cut(s) 249, 266, 365, 401
DpnI GATC 1 cut(s) 326
DpnII GATC 1 cut(s) 324
Eco47I GGWCC 1 cut(s) 278
FaeI CATG 2 cut(s) 95, 208
FaqI GGGAC 2 cut(s) 159, 198
FatI CATG 2 cut(s) 91, 204
FauI CCCGC 1 cut(s) 175
FauNDI CATATG 1 cut(s) 312
FblI GTMKAC 1 cut(s) 109
FokI GGATG 1 cut(s) 182
GsuI CTGGAG 1 cut(s) 33
Hin1II CATG 2 cut(s) 95, 208
HinfI GANTC 1 cut(s) 347
Hpy166II GTNNAC 2 cut(s) 110, 218
Hpy188I TCNGA 3 cut(s) 69, 85, 329
Hpy188III TCNNGA 3 cut(s) 194, 224, 403
Hpy8I GTNNAC 2 cut(s) 110, 218
HpyAV CCTTC 1 cut(s) 425
HpyCH4III ACNGT 2 cut(s) 128, 215
HpyCH4V TGCA 2 cut(s) 122, 290
HpyF3I CTNAG 4 cut(s) 249, 266, 365, 401
Hsp92II CATG 2 cut(s) 95, 208
Kzo9I GATC 1 cut(s) 324
LpnPI CCDG 4 cut(s) 56, 120, 360, 388
LweI GCATC 1 cut(s) 228
MalI GATC 1 cut(s) 326
MboI GATC 1 cut(s) 324
MboII GAAGA 1 cut(s) 334
MfeI CAATTG 1 cut(s) 285
MluCI AATT 5 cut(s) 54, 102, 189, 285, 387
MmeI TCCRAC 2 cut(s) 234, 237
MnlI CCTC 2 cut(s) 99, 418
MseI TTAA 3 cut(s) 141, 150, 390
MslI CAYNNNNRTG 1 cut(s) 311
MunI CAATTG 1 cut(s) 285
NdeI CATATG 1 cut(s) 312
NdeII GATC 1 cut(s) 324
NlaIII CATG 2 cut(s) 95, 208
NspV TTCGAA 1 cut(s) 320
PfeI GAWTC 1 cut(s) 347
PspPI GGNCC 1 cut(s) 278
RsaI GTAC 4 cut(s) 99, 130, 299, 411
RsaNI GTAC 4 cut(s) 98, 129, 298, 410
RseI CAYNNNNRTG 1 cut(s) 311
SaqAI TTAA 3 cut(s) 141, 150, 390
Sau3AI GATC 1 cut(s) 324
Sau96I GGNCC 1 cut(s) 278
ScaI AGTACT 2 cut(s) 130, 299
SetI ASST 5 cut(s) 32, 157, 267, 357, 429
SfaNI GCATC 1 cut(s) 228
SfuI TTCGAA 1 cut(s) 320
SinI GGWCC 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 311
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 5 cut(s) 54, 102, 189, 285, 387
SsiI CCGC 1 cut(s) 182
TaaI ACNGT 2 cut(s) 128, 215
TaqI TCGA 2 cut(s) 236, 320
TasI AATT 5 cut(s) 54, 102, 189, 285, 387
TatI WGTACW 2 cut(s) 128, 297
TfiI GAWTC 1 cut(s) 347
Tru1I TTAA 3 cut(s) 141, 150, 390
Tru9I TTAA 3 cut(s) 141, 150, 390
TspDTI ATGAA 2 cut(s) 173, 193
VpaK11BI GGWCC 1 cut(s) 278
XapI RAATTY 1 cut(s) 189
XmiI GTMKAC 1 cut(s) 109
ZrmI AGTACT 2 cut(s) 130, 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.