Rmu_sc0004732.1_g000015

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004732.1
OG0016688
Physical Location & Seq
Reverse (-)
48231 .. 50222
1992 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004732.1_g000015.1.cds

Sequence Viewer

Length: 1992 bp
atgcagttttattcacttcaaacctttgcattcttactagctcttttgtgttgtgctcttattcgagcagggtgcttgaatttcagctatccaacatttcgagacaaagtggatgacaaggattttatcatatccacaaattcaagcatagctttgaatgccatccaagtcactcatgatgcttctcaggcttccatcaacaacgaatctggaaggtttctatataagaagcgattcaggctgtggggagatggtcgtcggaacaaagcatcctttagcactaccttcgaaattaacatcagtaaccaaaccaatccgggtgctgaaggcctggcctttatcttaaccgacaactctactcttccggagaatagcaatggacaatggcttggaattgtaaatgcatattccaatggatctgatcgagccaaaattgtgggggtagagttcgacacaagtaaaagctacgagcaagatctcgatgacaaccatgtgggtgtggatgtaaatagcatttactctcgcaaacaagagagtttgacaagatatggcatcaggctttcaagcggtgtcagttatacagtgacaattcagtatgacagccagaacctcaccatatttgtttcccacaccaaggaaactggggagcaaatgaaggatcaagttatgtcccttcctcttaatctctctgactatcttccggcgaaggtttatgtgggattctcagcttccacgggcaacaacactgaattgaattgcataaagtcttggaacttcacctcttcacatatagatgaaaatccaaaccttctgtgggtttggattgcaatcccagcagcagtagtaatggtcctcctagcaggagttgcttcttacttctactggagaagacagcgtgaaaataaattactggaggatgcatatcccaggatagaagatgagattcaaagcaccgccatggctccaaaaaaattcaaactgaaagaacttcaaagagcaacaggcaggttcaatccaaagaacaagcttggaaaaggtggctttggaacagtatacaagggactcttgggaaataaagagatagcagtcaagagagtctcaaaggattcacgtcaaggcaagcaagaattcatagcagaagtcaccacaataggcagtcttcgtcacaaaaatttggttaaattgattggatggtgctatgaaagccatgagcttcttattgtctatgagttgatgccaaatggaagccttgacagattcctatttggggatgacaagttaggcagagagatggaggaactatcactgagctggaagagaaggcacagcatcataagcggggtagctcaggcactagattatcttcacaatggatgcgagaagagagtactccaccgagacataaaagccagcaatatcatgttagactcggatttcactgcacggttgggagactttggactagctcgtacgcttcagcaaagtgaagtaactcaccactccaccaaagagattgcaggaacactaggttatatggctccagaaacatttcttacagcaagggctacagtagaaacagatgtctatgcatttggtgttcttgtgcaagaagtcgtctgtggaagaaggccagctggaaatcaacttgagcagagtaactacaataatagcatagtttattggctatgggatctttacagcaggggaaagatccttgatgctgtggactcaagattggatggagacactgatgaggatgatatggtgtccgtgctgactttggggttagcctgttgccatcccaacccacatcagaggccttccatgagaactgtcctgaaggttcttacaagggaagcagatccaccatcgttgccaactgaaagaccggctttcgtatggccatccatgcctccatcattcaaaaaggacacagaatctgatttagatggaggtcgacttgctccattcacagaaatctctggaagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

663

Amino Acids

74.46

Weight (kDa)

6.53

Isoelectric Point (pI)

40.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016688)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06740 AT5G06740
fragaria_vesca FvH4_6g22130
malus_domestica MD12G1056500.v1.1 MD14G1055200.v1.1
prunus_persica Prupe.7G077800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0479461
rosa_laevigata RLG00000023569
rosa_multiflora Rmu_sc0004732.1_g000015
rosa_roxburghii Rroxscaffold_6G00402240
rosa_rugosa Rorug03G0175500
rosa_samantha Rh3CG256300 Rh3DG252100
rosa_wichuraiana Rw3G020250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 996
AccI GTMKAC 2 cut(s) 1053, 1957
AccIII TCCGGA 1 cut(s) 364
AciI CCGC 3 cut(s) 567, 954, 1338
AclWI GGATC 5 cut(s) 424, 666, 1698, 1705, 1856
AcoI YGGCCR 1 cut(s) 1901
AcsI RAATTY 5 cut(s) 79, 139, 971, 1127, 1171
AcuI CTGAAG 3 cut(s) 345, 1460, 1859
AfaI GTAC 2 cut(s) 1389, 1471
AfiI CCNNNNNNNGG 3 cut(s) 634, 814, 1267
AjiI CACGTC 1 cut(s) 1112
AjnI CCWGG 2 cut(s) 330, 926
AloI GAACNNNNNNTCC 2 cut(s) 254, 286
Alw21I GWGCWC 1 cut(s) 58
Alw26I GTCTC 5 cut(s) 96, 1102, 1392, 1446, 1737
AlwI GGATC 5 cut(s) 424, 666, 1698, 1705, 1856
AlwNI CAGNNNCTG 1 cut(s) 1940
Aor13HI TCCGGA 1 cut(s) 364
AoxI GGCC 5 cut(s) 328, 333, 1628, 1817, 1901
ApeKI GCWGC 1 cut(s) 836
ApoI RAATTY 5 cut(s) 79, 139, 971, 1127, 1171
Asp700I GAANNNNTTC 2 cut(s) 233, 1548
AspS9I GGNCC 1 cut(s) 850
AsuC2I CCSGG 1 cut(s) 318
AsuHPI GGTGA 4 cut(s) 604, 769, 1135, 1487
AsuII TTCGAA 1 cut(s) 288
AvaII GGWCC 1 cut(s) 850
BalI TGGCCA 1 cut(s) 1903
BbsI GAAGAC 2 cut(s) 895, 1151
Bbv12I GWGCWC 1 cut(s) 58
BbvI GCAGC 1 cut(s) 848
BcgI CGANNNNNNTGC 4 cut(s) 54, 88, 268, 302
BciT130I CCWGG 2 cut(s) 332, 928
BcnI CCSGG 1 cut(s) 318
BcoDI GTCTC 5 cut(s) 96, 1102, 1392, 1446, 1737
BfaI CTAG 5 cut(s) 38, 857, 1355, 1463, 1526
BfmI CTRYAG 1 cut(s) 1566
BfuAI ACCTGC 1 cut(s) 996
BglII AGATCT 1 cut(s) 475
BisI GCNGC 1 cut(s) 837
BlsI GCNGC 1 cut(s) 838
BmcAI AGTACT 1 cut(s) 1389
Bme1390I CCNGG 3 cut(s) 318, 332, 928
Bme18I GGWCC 1 cut(s) 850
BmgBI CACGTC 1 cut(s) 1112
BmgT120I GGNCC 1 cut(s) 850
BmiI GGNNCC 2 cut(s) 963, 1539
BmrFI CCNGG 3 cut(s) 318, 332, 928
BmrI ACTGGG 1 cut(s) 651
BmsI GCATC 8 cut(s) 169, 278, 561, 907, 1224, 1338, 1364, 1708
BmuI ACTGGG 1 cut(s) 651
BpiI GAAGAC 2 cut(s) 895, 1151
BpmI CTGGAG 3 cut(s) 904, 932, 1524
Bpu10I CCTNAGC 1 cut(s) 1347
Bpu14I TTCGAA 1 cut(s) 288
BpuEI CTTGAG 2 cut(s) 1667, 1714
BpuMI CCSGG 1 cut(s) 318
BsaBI GATNNNNATC 3 cut(s) 798, 827, 921
BsaJI CCNNGG 4 cut(s) 633, 732, 926, 957
BsaWI WCCGGW 1 cut(s) 364
Bsc4I CCNNNNNNNGG 3 cut(s) 634, 814, 1267
Bse118I RCCGGY 1 cut(s) 1888
Bse1I ACTGG 3 cut(s) 646, 887, 915
Bse3DI GCAATG 1 cut(s) 382
Bse8I GATNNNNATC 3 cut(s) 798, 827, 921
BseAI TCCGGA 1 cut(s) 364
BseBI CCWGG 2 cut(s) 332, 928
BseDI CCNNGG 4 cut(s) 633, 732, 926, 957
BseJI GATNNNNATC 3 cut(s) 798, 827, 921
BseLI CCNNNNNNNGG 3 cut(s) 634, 814, 1267
BseMI GCAATG 1 cut(s) 382
BseMII CTCAG 4 cut(s) 200, 738, 1298, 1361
BseNI ACTGG 3 cut(s) 646, 887, 915
BseXI GCAGC 1 cut(s) 848
BseYI CCCAGC 1 cut(s) 832
BsgI GTGCAG 1 cut(s) 1425
BshFI GGCC 5 cut(s) 330, 335, 1630, 1819, 1903
BsiHKAI GWGCWC 1 cut(s) 58
BsiSI CCGG 4 cut(s) 317, 365, 701, 1889
BsiWI CGTACG 1 cut(s) 1469
BslFI GGGAC 2 cut(s) 655, 1074
BslI CCNNNNNNNGG 3 cut(s) 634, 814, 1267
BsmAI GTCTC 5 cut(s) 96, 1102, 1392, 1446, 1737
BsmFI GGGAC 2 cut(s) 655, 1074
BsmI GAATGC 2 cut(s) 29, 163
BsnI GGCC 5 cut(s) 330, 335, 1630, 1819, 1903
Bsp119I TTCGAA 1 cut(s) 288
Bsp1286I GDGCHC 1 cut(s) 58
Bsp13I TCCGGA 1 cut(s) 364
Bsp143I GATC 7 cut(s) 416, 421, 475, 658, 1690, 1710, 1861
Bsp19I CCATGG 1 cut(s) 957
BspACI CCGC 3 cut(s) 567, 954, 1338
BspANI GGCC 5 cut(s) 330, 335, 1630, 1819, 1903
BspCNI CTCAG 4 cut(s) 199, 737, 1299, 1360
BspEI TCCGGA 1 cut(s) 364
BspHI TCATGA 1 cut(s) 175
BspLI GGNNCC 2 cut(s) 963, 1539
BspMI ACCTGC 1 cut(s) 996
BspPI GGATC 5 cut(s) 424, 666, 1698, 1705, 1856
BspT104I TTCGAA 1 cut(s) 288
BsrDI GCAATG 1 cut(s) 382
BsrFI RCCGGY 1 cut(s) 1888
BsrI ACTGG 3 cut(s) 646, 887, 915
BssAI RCCGGY 1 cut(s) 1888
BssECI CCNNGG 4 cut(s) 633, 732, 926, 957
BssMI GATC 7 cut(s) 416, 421, 475, 658, 1690, 1710, 1861
BssNAI GTATAC 1 cut(s) 1054
BssT1I CCWWGG 2 cut(s) 633, 957
Bst1107I GTATAC 1 cut(s) 1054
Bst2UI CCWGG 2 cut(s) 332, 928
Bst4CI ACNGT 5 cut(s) 583, 1051, 1446, 1570, 1834
Bst6I CTCTTC 4 cut(s) 366, 787, 1310, 1376
BstAPI GCANNNNNTGC 1 cut(s) 866
BstBI TTCGAA 1 cut(s) 288
BstC8I GCNNGC 3 cut(s) 1121, 1411, 1632
BstDEI CTNAG 4 cut(s) 186, 724, 1307, 1347
BstDSI CCRYGG 2 cut(s) 732, 957
BstKTI GATC 7 cut(s) 419, 424, 478, 661, 1693, 1713, 1864
BstMAI GTCTC 5 cut(s) 96, 1102, 1392, 1446, 1737
BstMBI GATC 7 cut(s) 416, 421, 475, 658, 1690, 1710, 1861
BstMWI GCNNNNNNNGC 8 cut(s) 158, 188, 238, 833, 866, 1203, 1335, 1909
BstNI CCWGG 2 cut(s) 332, 928
BstSCI CCNGG 3 cut(s) 316, 330, 926
BstSFI CTRYAG 1 cut(s) 1566
BstV1I GCAGC 1 cut(s) 848
BstV2I GAAGAC 2 cut(s) 895, 1151
BstX2I RGATCY 5 cut(s) 416, 475, 1690, 1710, 1861
BstXI CCANNNNNNTGG 1 cut(s) 436
BstYI RGATCY 5 cut(s) 416, 475, 1690, 1710, 1861
BstZ17I GTATAC 1 cut(s) 1054
BsuRI GGCC 5 cut(s) 330, 335, 1630, 1819, 1903
BtgI CCRYGG 2 cut(s) 732, 957
BtrI CACGTC 1 cut(s) 1112
BtsI GCAGTG 1 cut(s) 1437
BtsIMutI CAGTG 5 cut(s) 588, 744, 1304, 1437, 1746
BveI ACCTGC 1 cut(s) 996
Cac8I GCNNGC 3 cut(s) 1121, 1411, 1632
CaiI CAGNNNCTG 1 cut(s) 1940
CciI TCATGA 1 cut(s) 175
Cfr10I RCCGGY 1 cut(s) 1888
Cfr13I GGNCC 1 cut(s) 850
Csp6I GTAC 2 cut(s) 1388, 1470
CspCI CAANNNNNGTGG 2 cut(s) 1854, 1889
CviAII CATG 7 cut(s) 176, 491, 958, 1208, 1420, 1825, 1909
CviQI GTAC 2 cut(s) 1388, 1470
DdeI CTNAG 4 cut(s) 186, 724, 1307, 1347
DpnI GATC 7 cut(s) 418, 423, 477, 660, 1692, 1712, 1863
DpnII GATC 7 cut(s) 416, 421, 475, 658, 1690, 1710, 1861
EaeI YGGCCR 1 cut(s) 1901
Eam1104I CTCTTC 4 cut(s) 366, 787, 1310, 1376
EarI CTCTTC 4 cut(s) 366, 787, 1310, 1376
Eco130I CCWWGG 2 cut(s) 633, 957
Eco147I AGGCCT 2 cut(s) 330, 1819
Eco47I GGWCC 1 cut(s) 850
Eco57I CTGAAG 3 cut(s) 345, 1460, 1859
EcoRI GAATTC 1 cut(s) 1127
EcoRII CCWGG 2 cut(s) 330, 926
EcoT14I CCWWGG 2 cut(s) 633, 957
EcoT22I ATGCAT 3 cut(s) 406, 922, 1591
ErhI CCWWGG 2 cut(s) 633, 957
FaeI CATG 7 cut(s) 179, 494, 961, 1211, 1423, 1828, 1912
FalI AAGNNNNNCTT 6 cut(s) 136, 168, 1049, 1081, 1876, 1908
FaqI GGGAC 2 cut(s) 655, 1074
FatI CATG 7 cut(s) 175, 490, 957, 1207, 1419, 1824, 1908
FauI CCCGC 1 cut(s) 1331
FblI GTMKAC 2 cut(s) 1053, 1957
Fnu4HI GCNGC 1 cut(s) 837
Fsp4HI GCNGC 1 cut(s) 837
FspBI CTAG 5 cut(s) 38, 857, 1355, 1463, 1526
GluI GCNGC 1 cut(s) 837
GsaI CCCAGC 1 cut(s) 836
GsuI CTGGAG 3 cut(s) 904, 932, 1524
HaeIII GGCC 5 cut(s) 330, 335, 1630, 1819, 1903
HapII CCGG 4 cut(s) 317, 365, 701, 1889
Hin1II CATG 7 cut(s) 179, 494, 961, 1211, 1423, 1828, 1912
HincII GTYRAC 1 cut(s) 1958
HindII GTYRAC 1 cut(s) 1958
HindIII AAGCTT 1 cut(s) 1025
HpaII CCGG 4 cut(s) 317, 365, 701, 1889
HphI GGTGA 4 cut(s) 604, 769, 1135, 1487
Hpy166II GTNNAC 3 cut(s) 1054, 1726, 1958
Hpy188I TCNGA 6 cut(s) 261, 421, 691, 1432, 1815, 1942
Hpy8I GTNNAC 3 cut(s) 1054, 1726, 1958
Hpy99I CGWCG 1 cut(s) 261
HpyCH4III ACNGT 5 cut(s) 583, 1051, 1446, 1570, 1834
HpyCH4IV ACGT 1 cut(s) 1111
HpyF10VI GCNNNNNNNGC 8 cut(s) 158, 188, 238, 833, 866, 1203, 1335, 1909
HpyF3I CTNAG 4 cut(s) 186, 724, 1307, 1347
HpySE526I ACGT 1 cut(s) 1111
Hsp92II CATG 7 cut(s) 179, 494, 961, 1211, 1423, 1828, 1912
Kpn2I TCCGGA 1 cut(s) 364
Kzo9I GATC 7 cut(s) 416, 421, 475, 658, 1690, 1710, 1861
LmnI GCTCC 4 cut(s) 646, 967, 1543, 1969
Lsp1109I GCAGC 1 cut(s) 848
LweI GCATC 8 cut(s) 169, 278, 561, 907, 1224, 1338, 1364, 1708
MaeI CTAG 5 cut(s) 38, 857, 1355, 1463, 1526
MaeII ACGT 1 cut(s) 1111
MaeIII GTNAC 7 cut(s) 169, 302, 583, 1141, 1163, 1489, 1655
MalI GATC 7 cut(s) 418, 423, 477, 660, 1692, 1712, 1863
MboI GATC 7 cut(s) 416, 421, 475, 658, 1690, 1710, 1861
MflI RGATCY 5 cut(s) 416, 475, 1690, 1710, 1861
MhlI GDGCHC 1 cut(s) 58
MlsI TGGCCA 1 cut(s) 1903
MluNI TGGCCA 1 cut(s) 1903
MlyI GAGTC 4 cut(s) 1056, 1104, 1421, 1721
MmeI TCCRAC 2 cut(s) 116, 239
Mox20I TGGCCA 1 cut(s) 1903
Mph1103I ATGCAT 3 cut(s) 406, 922, 1591
MroI TCCGGA 1 cut(s) 364
MroXI GAANNNNTTC 2 cut(s) 233, 1548
MscI TGGCCA 1 cut(s) 1903
MseI TTAA 4 cut(s) 294, 344, 681, 1179
MslI CAYNNNNRTG 3 cut(s) 495, 792, 956
Msp20I TGGCCA 1 cut(s) 1903
MspA1I CMGCKG 1 cut(s) 1634
MspI CCGG 4 cut(s) 317, 365, 701, 1889
MspR9I CCNGG 3 cut(s) 318, 332, 928
Mva1269I GAATGC 2 cut(s) 29, 163
MvaI CCWGG 2 cut(s) 332, 928
MwoI GCNNNNNNNGC 8 cut(s) 158, 188, 238, 833, 866, 1203, 1335, 1909
NciI CCSGG 1 cut(s) 318
NcoI CCATGG 1 cut(s) 957
NdeII GATC 7 cut(s) 416, 421, 475, 658, 1690, 1710, 1861
NlaIII CATG 7 cut(s) 179, 494, 961, 1211, 1423, 1828, 1912
NlaIV GGNNCC 2 cut(s) 963, 1539
NmuCI GTSAC 4 cut(s) 169, 583, 1141, 1163
NsiI ATGCAT 3 cut(s) 406, 922, 1591
NspV TTCGAA 1 cut(s) 288
PagI TCATGA 1 cut(s) 175
PceI AGGCCT 2 cut(s) 330, 1819
PctI GAATGC 2 cut(s) 29, 163
PdmI GAANNNNTTC 2 cut(s) 233, 1548
PfeI GAWTC 7 cut(s) 206, 234, 720, 943, 1106, 1257, 1937
Pfl23II CGTACG 1 cut(s) 1469
PkrI GCNGC 1 cut(s) 838
PleI GAGTC 4 cut(s) 1056, 1103, 1421, 1721
PpsI GAGTC 4 cut(s) 1056, 1103, 1421, 1721
Psp6I CCWGG 2 cut(s) 330, 926
PspFI CCCAGC 1 cut(s) 832
PspGI CCWGG 2 cut(s) 330, 926
PspLI CGTACG 1 cut(s) 1469
PspN4I GGNNCC 2 cut(s) 963, 1539
PspPI GGNCC 1 cut(s) 850
PstNI CAGNNNCTG 1 cut(s) 1940
PsuI RGATCY 5 cut(s) 416, 475, 1690, 1710, 1861
PvuII CAGCTG 1 cut(s) 1634
RsaI GTAC 2 cut(s) 1389, 1471
RsaNI GTAC 2 cut(s) 1388, 1470
RseI CAYNNNNRTG 3 cut(s) 495, 792, 956
SalI GTCGAC 1 cut(s) 1956
SaqAI TTAA 4 cut(s) 294, 344, 681, 1179
SatI GCNGC 1 cut(s) 837
Sau3AI GATC 7 cut(s) 416, 421, 475, 658, 1690, 1710, 1861
Sau96I GGNCC 1 cut(s) 850
ScaI AGTACT 1 cut(s) 1389
SchI GAGTC 4 cut(s) 1056, 1104, 1421, 1721
ScrFI CCNGG 3 cut(s) 318, 332, 928
SduI GDGCHC 1 cut(s) 58
SfaNI GCATC 8 cut(s) 169, 278, 561, 907, 1224, 1338, 1364, 1708
SfcI CTRYAG 1 cut(s) 1566
SfuI TTCGAA 1 cut(s) 288
SinI GGWCC 1 cut(s) 850
SmiMI CAYNNNNRTG 3 cut(s) 495, 792, 956
SmlI CTYRAG 2 cut(s) 1646, 1729
SmoI CTYRAG 2 cut(s) 1646, 1729
SseBI AGGCCT 2 cut(s) 330, 1819
SsiI CCGC 3 cut(s) 567, 954, 1338
SspMI CTAG 5 cut(s) 38, 857, 1355, 1463, 1526
StuI AGGCCT 2 cut(s) 330, 1819
StyD4I CCNGG 3 cut(s) 316, 330, 926
StyI CCWWGG 2 cut(s) 633, 957
TaaI ACNGT 5 cut(s) 583, 1051, 1446, 1570, 1834
TaiI ACGT 1 cut(s) 1114
TaqI TCGA 7 cut(s) 64, 100, 288, 424, 450, 480, 1957
TatI WGTACW 1 cut(s) 1387
TfiI GAWTC 7 cut(s) 206, 234, 720, 943, 1106, 1257, 1937
Tru1I TTAA 4 cut(s) 294, 344, 681, 1179
Tru9I TTAA 4 cut(s) 294, 344, 681, 1179
TscAI CASTG 5 cut(s) 588, 751, 1311, 1444, 1753
TseFI GTSAC 4 cut(s) 169, 583, 1141, 1163
TseI GCWGC 1 cut(s) 836
Tsp45I GTSAC 4 cut(s) 169, 583, 1141, 1163
TspDTI ATGAA 4 cut(s) 668, 810, 1120, 1215
TspGWI ACGGA 1 cut(s) 1759
TspRI CASTG 5 cut(s) 588, 751, 1311, 1444, 1753
VpaK11BI GGWCC 1 cut(s) 850
XapI RAATTY 5 cut(s) 79, 139, 971, 1127, 1171
XcmI CCANNNNNNNNNTGG 1 cut(s) 810
XmiI GTMKAC 2 cut(s) 1053, 1957
XmnI GAANNNNTTC 2 cut(s) 233, 1548
XspI CTAG 5 cut(s) 38, 857, 1355, 1463, 1526
ZrmI AGTACT 1 cut(s) 1389
Zsp2I ATGCAT 3 cut(s) 406, 922, 1591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.