Rorug03G0175500

L-type lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0016688
Physical Location & Seq
Forward (+)
14860871 .. 14861686
816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0175500.1

Sequence Viewer

Length: 816 bp
ATGGCTTCAGAATCCCATGATCAACTTCACTTTGTTTTAATACCTCTAATGTCTCCAGGGCACCTCATACCAATGGCAGACATGGCTAAGCTATTGGCACTACATGGTGTGGTGGTCACAATTGTAACCACACCCCTTAATGCCATTCGAATCAAACCAATCATAGATCGTGCGATTGATTCTGGTCTCCCTATTCATATGGTGCAGTTCAGTTTGCCACTCCATGAGTTTGGTTTGCCAGAGGGATGTGAAAACTTGGATTCAGTTCCCTCAAGAAACTTGTTTCTGAATTTCTTTGATGCAGTTAGCAAGCTGCATCAGTCAGTAGAACAATTGCTTGAAACAATAAAACCCATTCCAAGCTGCATAATTTCAGATAGAGGTCTTTCATGGGCGGCTGAGATTGCTCAGAAGTTTGGGTTACCAAATCTTTTGTTTGATGGGACTAATTGCTTTACTCTTTTGTGTACTCATAATATACAAGCACACAAGATCCTAGACAGTGTTTCAGGCTCAGACCCCTTTGTGGTGCCTGGTTTGCCTGATGAGATTGAGCTTACTTCAGCCCAATTGCCGGGGCACCTGAATCCTTCGTCAGATGATTTAAGAGTTCTCCACAAAAAGATAGAGAAAGCTAAAGGAGCTTTTGGAATTGTTGTGAATAGCTTTGAGGAGTTGGAACCGGAATATTTCTCAGAGTATAGAAAGGTTACTAGTAGAGTTTGGAGTATCGGTCCAGTGTCACTGTCCAACCAGACAGAACTGGACAAAGCTCAAAGAGGAAACAAGGCCTCAATTGATAAAAAGAATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase Pkinase_Tyr

Protein Analysis

271

Amino Acids

29.8

Weight (kDa)

5.74

Isoelectric Point (pI)

38.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016688)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G06740 AT5G06740
fragaria_vesca FvH4_6g22130
malus_domestica MD12G1056500.v1.1 MD14G1055200.v1.1
prunus_persica Prupe.7G077800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0479461
rosa_laevigata RLG00000023569
rosa_multiflora Rmu_sc0004732.1_g000015
rosa_roxburghii Rroxscaffold_6G00402240
rosa_rugosa Rorug03G0175500
rosa_samantha Rh3CG256300 Rh3DG252100
rosa_wichuraiana Rw3G020250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 60, 529, 579
AciI CCGC 1 cut(s) 395
AclWI GGATC 1 cut(s) 487
AcsI RAATTY 1 cut(s) 289
AcuI CTGAAG 1 cut(s) 546
AfaI GTAC 1 cut(s) 469
AfiI CCNNNNNNNGG 2 cut(s) 526, 574
AgsI TTSAA 1 cut(s) 341
AhlI ACTAGT 1 cut(s) 713
AjnI CCWGG 2 cut(s) 55, 532
AluBI AGCT 8 cut(s) 91, 313, 363, 556, 635, 644, 666, 773
AluI AGCT 8 cut(s) 91, 313, 363, 556, 635, 644, 666, 773
Alw26I GTCTC 2 cut(s) 57, 191
AlwI GGATC 1 cut(s) 487
AoxI GGCC 1 cut(s) 789
ApeKI GCWGC 2 cut(s) 313, 363
ApoI RAATTY 1 cut(s) 289
AspS9I GGNCC 1 cut(s) 734
AsuC2I CCSGG 1 cut(s) 576
AsuII TTCGAA 1 cut(s) 148
AvaII GGWCC 1 cut(s) 734
BaeGI GKGCMC 2 cut(s) 63, 582
BanI GGYRCC 3 cut(s) 60, 529, 579
BbvI GCAGC 2 cut(s) 300, 350
BccI CCATC 1 cut(s) 434
BciT130I CCWGG 2 cut(s) 57, 534
BclI TGATCA 1 cut(s) 19
BcnI CCSGG 1 cut(s) 576
BcoDI GTCTC 2 cut(s) 57, 191
BcuI ACTAGT 1 cut(s) 713
BfaI CTAG 2 cut(s) 497, 714
BisI GCNGC 3 cut(s) 314, 364, 396
BlpI GCTNAGC 1 cut(s) 87
BlsI GCNGC 3 cut(s) 315, 365, 397
Bme1390I CCNGG 3 cut(s) 57, 534, 576
Bme18I GGWCC 1 cut(s) 734
BmgT120I GGNCC 1 cut(s) 734
BmiI GGNNCC 4 cut(s) 62, 531, 581, 681
BmrFI CCNGG 3 cut(s) 57, 534, 576
BmsI GCATC 2 cut(s) 289, 325
BpmI CTGGAG 1 cut(s) 39
Bpu1102I GCTNAGC 1 cut(s) 87
Bpu14I TTCGAA 1 cut(s) 148
BpuEI CTTGAG 1 cut(s) 256
BpuMI CCSGG 1 cut(s) 576
BsaI GGTCTC 1 cut(s) 191
BsaJI CCNNGG 2 cut(s) 56, 575
BsaWI WCCGGW 1 cut(s) 682
BsaXI ACNNNNNCTCC 2 cut(s) 718, 748
Bsc4I CCNNNNNNNGG 2 cut(s) 526, 574
Bse1I ACTGG 2 cut(s) 737, 768
BseBI CCWGG 2 cut(s) 57, 534
BseDI CCNNGG 2 cut(s) 56, 575
BseGI GGATG 1 cut(s) 251
BseLI CCNNNNNNNGG 2 cut(s) 526, 574
BseMII CTCAG 4 cut(s) 390, 422, 528, 708
BseNI ACTGG 2 cut(s) 737, 768
BseRI GAGGAG 1 cut(s) 686
BseSI GKGCMC 2 cut(s) 63, 582
BseXI GCAGC 2 cut(s) 300, 350
BsgI GTGCAG 1 cut(s) 224
BshFI GGCC 1 cut(s) 791
BshNI GGYRCC 3 cut(s) 60, 529, 579
BsiSI CCGG 2 cut(s) 575, 683
BslFI GGGAC 1 cut(s) 457
BslI CCNNNNNNNGG 2 cut(s) 526, 574
BsmAI GTCTC 2 cut(s) 57, 191
BsmFI GGGAC 1 cut(s) 457
BsmI GAATGC 1 cut(s) 814
BsnI GGCC 1 cut(s) 791
Bso31I GGTCTC 1 cut(s) 191
Bsp119I TTCGAA 1 cut(s) 148
Bsp1286I GDGCHC 2 cut(s) 63, 582
Bsp143I GATC 3 cut(s) 19, 166, 492
Bsp1720I GCTNAGC 1 cut(s) 87
BspACI CCGC 1 cut(s) 395
BspANI GGCC 1 cut(s) 791
BspCNI CTCAG 4 cut(s) 391, 421, 527, 707
BspLI GGNNCC 4 cut(s) 62, 531, 581, 681
BspPI GGATC 1 cut(s) 487
BspT104I TTCGAA 1 cut(s) 148
BspT107I GGYRCC 3 cut(s) 60, 529, 579
BspTNI GGTCTC 1 cut(s) 191
BsrI ACTGG 2 cut(s) 737, 768
BssECI CCNNGG 2 cut(s) 56, 575
BssMI GATC 3 cut(s) 19, 166, 492
Bst2UI CCWGG 2 cut(s) 57, 534
Bst4CI ACNGT 2 cut(s) 503, 747
BstBI TTCGAA 1 cut(s) 148
BstC8I GCNNGC 1 cut(s) 311
BstDEI CTNAG 5 cut(s) 87, 399, 408, 514, 694
BstEII GGTNACC 1 cut(s) 420
BstF5I GGATG 1 cut(s) 251
BstKTI GATC 3 cut(s) 22, 169, 495
BstMAI GTCTC 2 cut(s) 57, 191
BstMBI GATC 3 cut(s) 19, 166, 492
BstMWI GCNNNNNNNGC 4 cut(s) 83, 404, 538, 641
BstNI CCWGG 2 cut(s) 57, 534
BstPI GGTNACC 1 cut(s) 420
BstSCI CCNGG 3 cut(s) 55, 532, 574
BstSLI GKGCMC 2 cut(s) 63, 582
BstV1I GCAGC 2 cut(s) 300, 350
BstX2I RGATCY 1 cut(s) 492
BstXI CCANNNNNNTGG 1 cut(s) 230
BstYI RGATCY 1 cut(s) 492
BsuRI GGCC 1 cut(s) 791
BtsCI GGATG 1 cut(s) 251
BtsIMutI CAGTG 3 cut(s) 508, 743, 744
Cac8I GCNNGC 1 cut(s) 311
Cfr13I GGNCC 1 cut(s) 734
Csp6I GTAC 1 cut(s) 468
CviAII CATG 5 cut(s) 17, 82, 104, 224, 390
CviQI GTAC 1 cut(s) 468
DdeI CTNAG 5 cut(s) 87, 399, 408, 514, 694
DpnI GATC 3 cut(s) 21, 168, 494
DpnII GATC 3 cut(s) 19, 166, 492
Eco147I AGGCCT 1 cut(s) 791
Eco31I GGTCTC 1 cut(s) 191
Eco47I GGWCC 1 cut(s) 734
Eco57I CTGAAG 1 cut(s) 546
Eco91I GGTNACC 1 cut(s) 420
EcoO65I GGTNACC 1 cut(s) 420
EcoRII CCWGG 2 cut(s) 55, 532
FaeI CATG 5 cut(s) 20, 85, 107, 227, 393
FaqI GGGAC 1 cut(s) 457
FatI CATG 5 cut(s) 16, 81, 103, 223, 389
FauNDI CATATG 1 cut(s) 198
FbaI TGATCA 1 cut(s) 19
Fnu4HI GCNGC 3 cut(s) 314, 364, 396
FokI GGATG 1 cut(s) 258
Fsp4HI GCNGC 3 cut(s) 314, 364, 396
FspBI CTAG 2 cut(s) 497, 714
GluI GCNGC 3 cut(s) 314, 364, 396
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 1 cut(s) 791
HapII CCGG 2 cut(s) 575, 683
Hin1II CATG 5 cut(s) 20, 85, 107, 227, 393
HinfI GANTC 5 cut(s) 11, 150, 179, 260, 586
HpaII CCGG 2 cut(s) 575, 683
Hpy166II GTNNAC 1 cut(s) 468
Hpy188I TCNGA 7 cut(s) 10, 288, 376, 411, 517, 598, 697
Hpy188III TCNNGA 1 cut(s) 273
Hpy8I GTNNAC 1 cut(s) 468
HpyAV CCTTC 1 cut(s) 600
HpyCH4III ACNGT 2 cut(s) 503, 747
HpyCH4V TGCA 4 cut(s) 205, 302, 316, 366
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 404, 538, 641
HpyF3I CTNAG 5 cut(s) 87, 399, 408, 514, 694
Hsp92II CATG 5 cut(s) 20, 85, 107, 227, 393
Ksp22I TGATCA 1 cut(s) 19
Kzo9I GATC 3 cut(s) 19, 166, 492
LmnI GCTCC 1 cut(s) 641
Lsp1109I GCAGC 2 cut(s) 300, 350
LweI GCATC 2 cut(s) 289, 325
MaeI CTAG 2 cut(s) 497, 714
MaeIII GTNAC 5 cut(s) 115, 124, 420, 709, 741
MalI GATC 3 cut(s) 21, 168, 494
MboI GATC 3 cut(s) 19, 166, 492
MfeI CAATTG 4 cut(s) 120, 332, 569, 795
MflI RGATCY 1 cut(s) 492
MhlI GDGCHC 2 cut(s) 63, 582
MluCI AATT 8 cut(s) 120, 289, 332, 369, 448, 569, 651, 795
MmeI TCCRAC 2 cut(s) 657, 774
MnlI CCTC 8 cut(s) 54, 74, 235, 280, 374, 664, 773, 802
MseI TTAA 3 cut(s) 38, 138, 605
MslI CAYNNNNRTG 1 cut(s) 71
MspI CCGG 2 cut(s) 575, 683
MspR9I CCNGG 3 cut(s) 57, 534, 576
MunI CAATTG 4 cut(s) 120, 332, 569, 795
Mva1269I GAATGC 1 cut(s) 814
MvaI CCWGG 2 cut(s) 57, 534
MwoI GCNNNNNNNGC 4 cut(s) 83, 404, 538, 641
NciI CCSGG 1 cut(s) 576
NdeI CATATG 1 cut(s) 198
NdeII GATC 3 cut(s) 19, 166, 492
NlaIII CATG 5 cut(s) 20, 85, 107, 227, 393
NlaIV GGNNCC 4 cut(s) 62, 531, 581, 681
NmuCI GTSAC 2 cut(s) 115, 741
NspV TTCGAA 1 cut(s) 148
PceI AGGCCT 1 cut(s) 791
PctI GAATGC 1 cut(s) 814
PfeI GAWTC 5 cut(s) 11, 150, 179, 260, 586
PkrI GCNGC 3 cut(s) 315, 365, 397
Psp6I CCWGG 2 cut(s) 55, 532
PspEI GGTNACC 1 cut(s) 420
PspGI CCWGG 2 cut(s) 55, 532
PspN4I GGNNCC 4 cut(s) 62, 531, 581, 681
PspPI GGNCC 1 cut(s) 734
PsuI RGATCY 1 cut(s) 492
RsaI GTAC 1 cut(s) 469
RsaNI GTAC 1 cut(s) 468
RseI CAYNNNNRTG 1 cut(s) 71
SaqAI TTAA 3 cut(s) 38, 138, 605
SatI GCNGC 3 cut(s) 314, 364, 396
Sau3AI GATC 3 cut(s) 19, 166, 492
Sau96I GGNCC 1 cut(s) 734
ScrFI CCNGG 3 cut(s) 57, 534, 576
SduI GDGCHC 2 cut(s) 63, 582
SfaNI GCATC 2 cut(s) 289, 325
SfuI TTCGAA 1 cut(s) 148
SinI GGWCC 1 cut(s) 734
SmiMI CAYNNNNRTG 1 cut(s) 71
SmlI CTYRAG 1 cut(s) 271
SmoI CTYRAG 1 cut(s) 271
SpeI ACTAGT 1 cut(s) 713
Sse9I AATT 8 cut(s) 120, 289, 332, 369, 448, 569, 651, 795
SseBI AGGCCT 1 cut(s) 791
SsiI CCGC 1 cut(s) 395
SspI AATATT 1 cut(s) 689
SspMI CTAG 2 cut(s) 497, 714
StuI AGGCCT 1 cut(s) 791
StyD4I CCNGG 3 cut(s) 55, 532, 574
TaaI ACNGT 2 cut(s) 503, 747
TaqI TCGA 1 cut(s) 148
TaqII GACCGA 1 cut(s) 722
TasI AATT 8 cut(s) 120, 289, 332, 369, 448, 569, 651, 795
TatI WGTACW 1 cut(s) 467
TauI GCSGC 1 cut(s) 398
TfiI GAWTC 5 cut(s) 11, 150, 179, 260, 586
Tru1I TTAA 3 cut(s) 38, 138, 605
Tru9I TTAA 3 cut(s) 38, 138, 605
TscAI CASTG 3 cut(s) 508, 744, 750
TseFI GTSAC 2 cut(s) 115, 741
TseI GCWGC 2 cut(s) 313, 363
Tsp45I GTSAC 2 cut(s) 115, 741
TspDTI ATGAA 2 cut(s) 185, 378
TspRI CASTG 3 cut(s) 508, 744, 750
VpaK11BI GGWCC 1 cut(s) 734
XapI RAATTY 1 cut(s) 289
XspI CTAG 2 cut(s) 497, 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.