Rmu_sc0004797.1_g000005

monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004797.1
OG0025438
Physical Location & Seq
Forward (+)
30498 .. 31028
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004797.1_g000005.1.cds

Sequence Viewer

Length: 531 bp
atggcagctgctaaatccacaaggcgtatatgggtcccggggccagtgatagtgggagcaggtccttccggcttagctgccgcggcttgtctcaaggaaaaaggtattccgagcttaatcctagaaaggaccaactgcatagcttcgttgtggcagcttaagacctacgaccgtctctgtcttcatctcccaaaacagttctgcgagctcatactcatgctattccctgcagatttcccaacctacccaaccaagcatcagttcgcgagttacttaaacgcttatgccgagcgctttgatctaaagccgggtttcaacacgacggtggtgagtgccaagtacgacagtcgttgcgggctttggtcggttaagactttggggttgaaaaatgaggaggcgattgagtatgtttgtcagtttagggtcatcgtcgccaccggagaaaatgctgaggaggttgtgccggagtttgaaggagtgagggactttggtgggcccattgtcagtttacatctaatatactcgtcatga

Protein Analysis

176

Amino Acids

19.47

Weight (kDa)

7.59

Isoelectric Point (pI)

38.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025438)

Species Orthologous Gene IDs
rosa_laevigata RLG00000032760
rosa_multiflora Rmu_sc0004797.1_g000005 Rmu_sc0004797.1_g000006

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 50
AccII CGCG 2 cut(s) 83, 266
AciI CCGC 3 cut(s) 81, 83, 354
AfaI GTAC 1 cut(s) 341
AfeI AGCGCT 1 cut(s) 293
AflII CTTAAG 1 cut(s) 158
AgsI TTSAA 3 cut(s) 316, 385, 473
AjuI GAANNNNNNNTTGG 2 cut(s) 245, 277
AleI CACNNNNGTG 1 cut(s) 323
AluBI AGCT 6 cut(s) 8, 77, 114, 143, 157, 208
AluI AGCT 6 cut(s) 8, 77, 114, 143, 157, 208
Alw21I GWGCWC 1 cut(s) 210
Alw26I GTCTC 2 cut(s) 95, 179
Ama87I CYCGRG 1 cut(s) 37
Aor51HI AGCGCT 1 cut(s) 293
AoxI GGCC 2 cut(s) 41, 494
ApaI GGGCCC 1 cut(s) 498
ApeKI GCWGC 4 cut(s) 5, 8, 77, 154
AspLEI GCGC 1 cut(s) 294
AspS9I GGNCC 6 cut(s) 34, 41, 62, 129, 494, 495
AsuC2I CCSGG 3 cut(s) 38, 39, 309
AsuHPI GGTGA 1 cut(s) 340
AvaI CYCGRG 1 cut(s) 37
AvaII GGWCC 3 cut(s) 34, 62, 129
BaeGI GKGCMC 1 cut(s) 498
BanII GRGCYC 2 cut(s) 210, 498
BbsI GAAGAC 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 210
BbvCI CCTCAGC 1 cut(s) 450
BbvI GCAGC 3 cut(s) 17, 64, 166
BcnI CCSGG 3 cut(s) 38, 39, 309
BcoDI GTCTC 2 cut(s) 95, 179
BfaI CTAG 1 cut(s) 122
BfmI CTRYAG 1 cut(s) 228
BfoI RGCGCY 1 cut(s) 295
BfrI CTTAAG 1 cut(s) 158
BfuAI ACCTGC 1 cut(s) 50
BisI GCNGC 6 cut(s) 6, 9, 78, 81, 84, 155
BlpI GCTNAGC 1 cut(s) 73
BlsI GCNGC 6 cut(s) 7, 10, 79, 82, 85, 156
Bme1390I CCNGG 3 cut(s) 38, 39, 309
Bme18I GGWCC 3 cut(s) 34, 62, 129
BmeT110I CYCGRG 1 cut(s) 37
BmgT120I GGNCC 6 cut(s) 34, 41, 62, 129, 494, 495
BmiI GGNNCC 4 cut(s) 35, 36, 42, 496
BmrFI CCNGG 3 cut(s) 38, 39, 309
BmsI GCATC 1 cut(s) 265
BpiI GAAGAC 1 cut(s) 173
Bpu10I CCTNAGC 1 cut(s) 450
Bpu1102I GCTNAGC 1 cut(s) 73
BpuEI CTTGAG 1 cut(s) 77
BpuMI CCSGG 3 cut(s) 38, 39, 309
BsaJI CCNNGG 3 cut(s) 37, 38, 81
BsaWI WCCGGW 1 cut(s) 437
Bse1I ACTGG 1 cut(s) 44
BseDI CCNNGG 3 cut(s) 37, 38, 81
BseMII CTCAG 1 cut(s) 441
BseNI ACTGG 1 cut(s) 44
BseRI GAGGAG 2 cut(s) 407, 467
BseSI GKGCMC 1 cut(s) 498
BseXI GCAGC 3 cut(s) 17, 64, 166
Bsh1236I CGCG 2 cut(s) 83, 266
Bsh1285I CGRYCG 1 cut(s) 172
BshFI GGCC 2 cut(s) 43, 496
BsiEI CGRYCG 1 cut(s) 172
BsiHKAI GWGCWC 1 cut(s) 210
BsiHKCI CYCGRG 1 cut(s) 37
BsiSI CCGG 5 cut(s) 38, 69, 308, 438, 464
BslFI GGGAC 2 cut(s) 20, 497
BsmAI GTCTC 2 cut(s) 95, 179
BsmBI CGTCTC 1 cut(s) 179
BsmFI GGGAC 2 cut(s) 20, 497
BsnI GGCC 2 cut(s) 43, 496
BsoBI CYCGRG 1 cut(s) 37
Bsp120I GGGCCC 1 cut(s) 494
Bsp1286I GDGCHC 2 cut(s) 210, 498
Bsp143I GATC 1 cut(s) 298
Bsp1720I GCTNAGC 1 cut(s) 73
Bsp68I TCGCGA 1 cut(s) 266
BspACI CCGC 3 cut(s) 81, 83, 354
BspANI GGCC 2 cut(s) 43, 496
BspCNI CTCAG 1 cut(s) 442
BspFNI CGCG 2 cut(s) 83, 266
BspHI TCATGA 1 cut(s) 527
BspLI GGNNCC 4 cut(s) 35, 36, 42, 496
BspMAI CTGCAG 1 cut(s) 232
BspMI ACCTGC 1 cut(s) 50
BspTI CTTAAG 1 cut(s) 158
BsrI ACTGG 1 cut(s) 44
BssECI CCNNGG 3 cut(s) 37, 38, 81
BssMI GATC 1 cut(s) 298
Bst4CI ACNGT 4 cut(s) 173, 198, 325, 347
BstAFI CTTAAG 1 cut(s) 158
BstC8I GCNNGC 2 cut(s) 206, 356
BstDEI CTNAG 2 cut(s) 73, 450
BstDSI CCRYGG 1 cut(s) 81
BstFNI CGCG 2 cut(s) 83, 266
BstH2I RGCGCY 1 cut(s) 295
BstHHI GCGC 1 cut(s) 294
BstKTI GATC 1 cut(s) 301
BstMAI GTCTC 2 cut(s) 95, 179
BstMBI GATC 1 cut(s) 298
BstMCI CGRYCG 1 cut(s) 172
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstSCI CCNGG 3 cut(s) 36, 37, 307
BstSFI CTRYAG 1 cut(s) 228
BstSLI GKGCMC 1 cut(s) 498
BstUI CGCG 2 cut(s) 83, 266
BstV1I GCAGC 3 cut(s) 17, 64, 166
BstV2I GAAGAC 1 cut(s) 173
BsuRI GGCC 2 cut(s) 43, 496
BtgI CCRYGG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 51
BtuMI TCGCGA 1 cut(s) 266
BveI ACCTGC 1 cut(s) 50
Cac8I GCNNGC 2 cut(s) 206, 356
CciI TCATGA 1 cut(s) 527
CfoI GCGC 1 cut(s) 294
Cfr13I GGNCC 6 cut(s) 34, 41, 62, 129, 494, 495
Cfr42I CCGCGG 1 cut(s) 84
Cfr9I CCCGGG 1 cut(s) 37
Csp6I GTAC 1 cut(s) 340
CviAII CATG 2 cut(s) 217, 528
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 2 cut(s) 73, 450
DpnI GATC 1 cut(s) 300
DpnII GATC 1 cut(s) 298
Ecl136II GAGCTC 1 cut(s) 208
Eco24I GRGCYC 2 cut(s) 210, 498
Eco47I GGWCC 3 cut(s) 34, 62, 129
Eco47III AGCGCT 1 cut(s) 293
Eco53kI GAGCTC 1 cut(s) 208
Eco88I CYCGRG 1 cut(s) 37
EcoICRI GAGCTC 1 cut(s) 208
EcoO109I RGGNCCY 2 cut(s) 34, 62
EcoT38I GRGCYC 2 cut(s) 210, 498
Esp3I CGTCTC 1 cut(s) 179
FaeI CATG 2 cut(s) 220, 531
FaiI YATR 9 cut(s) 29, 31, 140, 212, 218, 285, 408, 520, 529
FaqI GGGAC 2 cut(s) 20, 497
FatI CATG 2 cut(s) 216, 527
FauI CCCGC 1 cut(s) 347
Fnu4HI GCNGC 6 cut(s) 6, 9, 78, 81, 84, 155
FriOI GRGCYC 2 cut(s) 210, 498
Fsp4HI GCNGC 6 cut(s) 6, 9, 78, 81, 84, 155
FspBI CTAG 1 cut(s) 122
GlaI GCGC 1 cut(s) 293
GluI GCNGC 6 cut(s) 6, 9, 78, 81, 84, 155
HaeII RGCGCY 1 cut(s) 295
HaeIII GGCC 2 cut(s) 43, 496
HapII CCGG 5 cut(s) 38, 69, 308, 438, 464
HhaI GCGC 1 cut(s) 294
Hin1II CATG 2 cut(s) 220, 531
Hin6I GCGC 1 cut(s) 292
HinP1I GCGC 1 cut(s) 292
HpaII CCGG 5 cut(s) 38, 69, 308, 438, 464
HphI GGTGA 1 cut(s) 340
Hpy166II GTNNAC 1 cut(s) 509
Hpy188I TCNGA 1 cut(s) 111
Hpy188III TCNNGA 2 cut(s) 265, 528
Hpy8I GTNNAC 1 cut(s) 509
Hpy99I CGWCG 2 cut(s) 325, 434
HpyAV CCTTC 2 cut(s) 75, 467
HpyCH4III ACNGT 4 cut(s) 173, 198, 325, 347
HpyCH4V TGCA 2 cut(s) 138, 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 2 cut(s) 73, 450
Hsp92II CATG 2 cut(s) 220, 531
HspAI GCGC 1 cut(s) 292
KflI GGGWCCC 1 cut(s) 34
KspI CCGCGG 1 cut(s) 84
Kzo9I GATC 1 cut(s) 298
LmnI GCTCC 1 cut(s) 56
LpnPI CCDG 8 cut(s) 45, 51, 57, 82, 240, 321, 451, 477
Lsp1109I GCAGC 3 cut(s) 17, 64, 166
LweI GCATC 1 cut(s) 265
MaeI CTAG 1 cut(s) 122
MaeIII GTNAC 1 cut(s) 269
MalI GATC 1 cut(s) 300
MboI GATC 1 cut(s) 298
MboII GAAGA 1 cut(s) 173
MhlI GDGCHC 2 cut(s) 210, 498
MnlI CCTC 5 cut(s) 385, 388, 445, 448, 474
MseI TTAA 4 cut(s) 116, 159, 275, 369
MslI CAYNNNNRTG 2 cut(s) 215, 323
MspA1I CMGCKG 2 cut(s) 8, 83
MspCI CTTAAG 1 cut(s) 158
MspI CCGG 5 cut(s) 38, 69, 308, 438, 464
MspR9I CCNGG 3 cut(s) 38, 39, 309
MvnI CGCG 2 cut(s) 83, 266
MwoI GCNNNNNNNGC 1 cut(s) 83
NciI CCSGG 3 cut(s) 38, 39, 309
NdeII GATC 1 cut(s) 298
NlaIII CATG 2 cut(s) 220, 531
NlaIV GGNNCC 4 cut(s) 35, 36, 42, 496
NmeAIII GCCGAG 1 cut(s) 313
NruI TCGCGA 1 cut(s) 266
OliI CACNNNNGTG 1 cut(s) 323
PagI TCATGA 1 cut(s) 527
PcsI WCGNNNNNNNCGW 1 cut(s) 285
PkrI GCNGC 6 cut(s) 7, 10, 79, 82, 85, 156
PpuMI RGGWCCY 2 cut(s) 34, 62
Psp124BI GAGCTC 1 cut(s) 210
Psp5II RGGWCCY 2 cut(s) 34, 62
PspN4I GGNNCC 4 cut(s) 35, 36, 42, 496
PspOMI GGGCCC 1 cut(s) 494
PspPI GGNCC 6 cut(s) 34, 41, 62, 129, 494, 495
PspPPI RGGWCCY 2 cut(s) 34, 62
PstI CTGCAG 1 cut(s) 232
PvuII CAGCTG 1 cut(s) 8
RruI TCGCGA 1 cut(s) 266
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
RseI CAYNNNNRTG 2 cut(s) 215, 323
SacI GAGCTC 1 cut(s) 210
SacII CCGCGG 1 cut(s) 84
SaqAI TTAA 4 cut(s) 116, 159, 275, 369
SatI GCNGC 6 cut(s) 6, 9, 78, 81, 84, 155
Sau3AI GATC 1 cut(s) 298
Sau96I GGNCC 6 cut(s) 34, 41, 62, 129, 494, 495
ScrFI CCNGG 3 cut(s) 38, 39, 309
SduI GDGCHC 2 cut(s) 210, 498
SfaNI GCATC 1 cut(s) 265
SfcI CTRYAG 1 cut(s) 228
Sfr303I CCGCGG 1 cut(s) 84
SgrBI CCGCGG 1 cut(s) 84
SinI GGWCC 3 cut(s) 34, 62, 129
SmaI CCCGGG 1 cut(s) 39
SmiMI CAYNNNNRTG 2 cut(s) 215, 323
SmlI CTYRAG 2 cut(s) 92, 158
SmoI CTYRAG 2 cut(s) 92, 158
SsiI CCGC 3 cut(s) 81, 83, 354
SspMI CTAG 1 cut(s) 122
SstI GAGCTC 1 cut(s) 210
StyD4I CCNGG 3 cut(s) 36, 37, 307
TaaI ACNGT 4 cut(s) 173, 198, 325, 347
TauI GCSGC 2 cut(s) 83, 86
Tru1I TTAA 4 cut(s) 116, 159, 275, 369
Tru9I TTAA 4 cut(s) 116, 159, 275, 369
TscAI CASTG 1 cut(s) 51
TseI GCWGC 4 cut(s) 5, 8, 77, 154
TspDTI ATGAA 1 cut(s) 173
TspMI CCCGGG 1 cut(s) 37
TspRI CASTG 1 cut(s) 51
Vha464I CTTAAG 1 cut(s) 158
VpaK11BI GGWCC 3 cut(s) 34, 62, 129
XmaI CCCGGG 1 cut(s) 37
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.