Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_multiflora | Rmu_sc0004890.1_g000001 Rmu_sc0015978.1_g000001 Rmu_sc0017326.1_g000001 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 5 cut(s) | 31, 123, 426, 429, 438 |
| AclWI | GGATC | 1 cut(s) | 470 |
| AcoI | YGGCCR | 1 cut(s) | 325 |
| AcuI | CTGAAG | 2 cut(s) | 26, 174 |
| AgsI | TTSAA | 3 cut(s) | 308, 385, 446 |
| AluBI | AGCT | 3 cut(s) | 110, 318, 490 |
| AluI | AGCT | 3 cut(s) | 110, 318, 490 |
| Alw21I | GWGCWC | 1 cut(s) | 417 |
| AlwI | GGATC | 1 cut(s) | 470 |
| AoxI | GGCC | 1 cut(s) | 325 |
| Bbv12I | GWGCWC | 1 cut(s) | 417 |
| BccI | CCATC | 1 cut(s) | 339 |
| BceAI | ACGGC | 1 cut(s) | 425 |
| BciVI | GTATCC | 1 cut(s) | 445 |
| BclI | TGATCA | 1 cut(s) | 166 |
| BfuI | GTATCC | 1 cut(s) | 445 |
| BglII | AGATCT | 1 cut(s) | 297 |
| BisI | GCNGC | 2 cut(s) | 124, 429 |
| BlsI | GCNGC | 2 cut(s) | 125, 430 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 404, 436 |
| Bsa29I | ATCGAT | 1 cut(s) | 450 |
| Bse118I | RCCGGY | 1 cut(s) | 394 |
| BseCI | ATCGAT | 1 cut(s) | 450 |
| BseGI | GGATG | 2 cut(s) | 331, 359 |
| BseMII | CTCAG | 2 cut(s) | 233, 483 |
| BshFI | GGCC | 1 cut(s) | 327 |
| BshVI | ATCGAT | 1 cut(s) | 450 |
| BsiHKAI | GWGCWC | 1 cut(s) | 417 |
| BsiSI | CCGG | 1 cut(s) | 395 |
| BsnI | GGCC | 1 cut(s) | 327 |
| Bsp1286I | GDGCHC | 1 cut(s) | 417 |
| Bsp143I | GATC | 3 cut(s) | 166, 297, 475 |
| BspACI | CCGC | 5 cut(s) | 31, 123, 426, 429, 438 |
| BspANI | GGCC | 1 cut(s) | 327 |
| BspCNI | CTCAG | 2 cut(s) | 232, 482 |
| BspDI | ATCGAT | 1 cut(s) | 450 |
| BspPI | GGATC | 1 cut(s) | 470 |
| BsrFI | RCCGGY | 1 cut(s) | 394 |
| BssAI | RCCGGY | 1 cut(s) | 394 |
| BssMI | GATC | 3 cut(s) | 166, 297, 475 |
| Bst4CI | ACNGT | 1 cut(s) | 496 |
| Bst6I | CTCTTC | 5 cut(s) | 45, 349, 361, 370, 427 |
| BstC8I | GCNNGC | 1 cut(s) | 396 |
| BstDEI | CTNAG | 2 cut(s) | 219, 469 |
| BstF5I | GGATG | 2 cut(s) | 331, 359 |
| BstKTI | GATC | 3 cut(s) | 169, 300, 478 |
| BstMBI | GATC | 3 cut(s) | 166, 297, 475 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 277, 324, 437 |
| BstX2I | RGATCY | 1 cut(s) | 297 |
| BstYI | RGATCY | 1 cut(s) | 297 |
| Bsu15I | ATCGAT | 1 cut(s) | 450 |
| BsuI | GTATCC | 1 cut(s) | 445 |
| BsuRI | GGCC | 1 cut(s) | 327 |
| BsuTUI | ATCGAT | 1 cut(s) | 450 |
| BtsCI | GGATG | 2 cut(s) | 331, 359 |
| Cac8I | GCNNGC | 1 cut(s) | 396 |
| Cfr10I | RCCGGY | 1 cut(s) | 394 |
| ClaI | ATCGAT | 1 cut(s) | 450 |
| CseI | GACGC | 1 cut(s) | 383 |
| CviJI | RGCY | 9 cut(s) | 110, 126, 233, 266, 280, 318, 327, 398, 490 |
| CviKI_1 | RGCY | 9 cut(s) | 110, 126, 233, 266, 280, 318, 327, 398, 490 |
| DdeI | CTNAG | 2 cut(s) | 219, 469 |
| DpnI | GATC | 3 cut(s) | 168, 299, 477 |
| DpnII | GATC | 3 cut(s) | 166, 297, 475 |
| EaeI | YGGCCR | 1 cut(s) | 325 |
| Eam1104I | CTCTTC | 5 cut(s) | 45, 349, 361, 370, 427 |
| EarI | CTCTTC | 5 cut(s) | 45, 349, 361, 370, 427 |
| EciI | GGCGGA | 2 cut(s) | 415, 427 |
| Eco57I | CTGAAG | 2 cut(s) | 26, 174 |
| FaiI | YATR | 4 cut(s) | 74, 132, 203, 251 |
| FbaI | TGATCA | 1 cut(s) | 166 |
| Fnu4HI | GCNGC | 2 cut(s) | 124, 429 |
| FokI | GGATG | 2 cut(s) | 318, 346 |
| Fsp4HI | GCNGC | 2 cut(s) | 124, 429 |
| GluI | GCNGC | 2 cut(s) | 124, 429 |
| HaeIII | GGCC | 1 cut(s) | 327 |
| HapII | CCGG | 1 cut(s) | 395 |
| HgaI | GACGC | 1 cut(s) | 383 |
| HincII | GTYRAC | 1 cut(s) | 216 |
| HindII | GTYRAC | 1 cut(s) | 216 |
| HinfI | GANTC | 7 cut(s) | 58, 152, 198, 217, 419, 461, 467 |
| HpaII | CCGG | 1 cut(s) | 395 |
| Hpy166II | GTNNAC | 1 cut(s) | 216 |
| Hpy188I | TCNGA | 5 cut(s) | 90, 222, 373, 466, 472 |
| Hpy188III | TCNNGA | 3 cut(s) | 192, 295, 458 |
| Hpy8I | GTNNAC | 1 cut(s) | 216 |
| Hpy99I | CGWCG | 1 cut(s) | 377 |
| HpyAV | CCTTC | 2 cut(s) | 256, 391 |
| HpyCH4III | ACNGT | 1 cut(s) | 496 |
| HpyCH4V | TGCA | 2 cut(s) | 253, 409 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 277, 324, 437 |
| HpyF3I | CTNAG | 2 cut(s) | 219, 469 |
| KroI | GCCGGC | 1 cut(s) | 394 |
| KroNI | GCCGGC | 1 cut(s) | 396 |
| Ksp22I | TGATCA | 1 cut(s) | 166 |
| Kzo9I | GATC | 3 cut(s) | 166, 297, 475 |
| LmnI | GCTCC | 1 cut(s) | 412 |
| LpnPI | CCDG | 8 cut(s) | 83, 162, 177, 177, 308, 395, 408, 497 |
| MaeIII | GTNAC | 1 cut(s) | 496 |
| MalI | GATC | 3 cut(s) | 168, 299, 477 |
| MboI | GATC | 3 cut(s) | 166, 297, 475 |
| MflI | RGATCY | 1 cut(s) | 297 |
| MhlI | GDGCHC | 1 cut(s) | 417 |
| MluCI | AATT | 3 cut(s) | 49, 81, 274 |
| MlyI | GAGTC | 4 cut(s) | 207, 211, 413, 461 |
| MmeI | TCCRAC | 1 cut(s) | 396 |
| MnlI | CCTC | 4 cut(s) | 220, 364, 373, 489 |
| MroNI | GCCGGC | 1 cut(s) | 394 |
| MseI | TTAA | 1 cut(s) | 505 |
| MspI | CCGG | 1 cut(s) | 395 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 277, 324, 437 |
| NaeI | GCCGGC | 1 cut(s) | 396 |
| NdeII | GATC | 3 cut(s) | 166, 297, 475 |
| NgoMIV | GCCGGC | 1 cut(s) | 394 |
| NmeAIII | GCCGAG | 1 cut(s) | 303 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 309, 456 |
| PdiI | GCCGGC | 1 cut(s) | 396 |
| PfeI | GAWTC | 3 cut(s) | 58, 152, 461 |
| PkrI | GCNGC | 2 cut(s) | 125, 430 |
| PleI | GAGTC | 4 cut(s) | 206, 211, 413, 461 |
| PpsI | GAGTC | 4 cut(s) | 206, 211, 413, 461 |
| PsuI | RGATCY | 1 cut(s) | 297 |
| SaqAI | TTAA | 1 cut(s) | 505 |
| SatI | GCNGC | 2 cut(s) | 124, 429 |
| Sau3AI | GATC | 3 cut(s) | 166, 297, 475 |
| SchI | GAGTC | 4 cut(s) | 207, 211, 413, 461 |
| SduI | GDGCHC | 1 cut(s) | 417 |
| SetI | ASST | 6 cut(s) | 112, 138, 151, 231, 320, 492 |
| Sse9I | AATT | 3 cut(s) | 49, 81, 274 |
| SsiI | CCGC | 5 cut(s) | 31, 123, 426, 429, 438 |
| TaaI | ACNGT | 1 cut(s) | 496 |
| TaqI | TCGA | 2 cut(s) | 402, 450 |
| TasI | AATT | 3 cut(s) | 49, 81, 274 |
| TauI | GCSGC | 2 cut(s) | 126, 431 |
| TfiI | GAWTC | 3 cut(s) | 58, 152, 461 |
| Tru1I | TTAA | 1 cut(s) | 505 |
| Tru9I | TTAA | 1 cut(s) | 505 |
| TspDTI | ATGAA | 1 cut(s) | 348 |