Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_multiflora | Rmu_sc0004890.1_g000001 Rmu_sc0015978.1_g000001 Rmu_sc0017326.1_g000001 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 5 cut(s) | 31, 123, 438, 441, 450 |
| AclWI | GGATC | 1 cut(s) | 482 |
| AcoI | YGGCCR | 2 cut(s) | 219, 337 |
| AcuI | CTGAAG | 2 cut(s) | 26, 186 |
| AgsI | TTSAA | 3 cut(s) | 320, 397, 458 |
| AluBI | AGCT | 3 cut(s) | 110, 330, 502 |
| AluI | AGCT | 3 cut(s) | 110, 330, 502 |
| Alw21I | GWGCWC | 1 cut(s) | 429 |
| AlwI | GGATC | 1 cut(s) | 482 |
| AoxI | GGCC | 2 cut(s) | 219, 337 |
| Bbv12I | GWGCWC | 1 cut(s) | 429 |
| BccI | CCATC | 1 cut(s) | 351 |
| BceAI | ACGGC | 1 cut(s) | 437 |
| BciVI | GTATCC | 1 cut(s) | 457 |
| BclI | TGATCA | 1 cut(s) | 178 |
| BfuI | GTATCC | 1 cut(s) | 457 |
| BglII | AGATCT | 1 cut(s) | 309 |
| BisI | GCNGC | 2 cut(s) | 124, 441 |
| BlsI | GCNGC | 2 cut(s) | 125, 442 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 416, 448 |
| Bsa29I | ATCGAT | 1 cut(s) | 462 |
| Bse118I | RCCGGY | 1 cut(s) | 406 |
| BseCI | ATCGAT | 1 cut(s) | 462 |
| BseGI | GGATG | 2 cut(s) | 343, 371 |
| BseMII | CTCAG | 2 cut(s) | 245, 495 |
| BshFI | GGCC | 2 cut(s) | 221, 339 |
| BshVI | ATCGAT | 1 cut(s) | 462 |
| BsiHKAI | GWGCWC | 1 cut(s) | 429 |
| BsiSI | CCGG | 1 cut(s) | 407 |
| BsnI | GGCC | 2 cut(s) | 221, 339 |
| Bsp1286I | GDGCHC | 1 cut(s) | 429 |
| Bsp143I | GATC | 3 cut(s) | 178, 309, 487 |
| BspACI | CCGC | 5 cut(s) | 31, 123, 438, 441, 450 |
| BspANI | GGCC | 2 cut(s) | 221, 339 |
| BspCNI | CTCAG | 2 cut(s) | 244, 494 |
| BspDI | ATCGAT | 1 cut(s) | 462 |
| BspPI | GGATC | 1 cut(s) | 482 |
| BsrFI | RCCGGY | 1 cut(s) | 406 |
| BssAI | RCCGGY | 1 cut(s) | 406 |
| BssMI | GATC | 3 cut(s) | 178, 309, 487 |
| Bst6I | CTCTTC | 5 cut(s) | 45, 361, 373, 382, 439 |
| BstC8I | GCNNGC | 1 cut(s) | 408 |
| BstDEI | CTNAG | 2 cut(s) | 231, 481 |
| BstF5I | GGATG | 2 cut(s) | 343, 371 |
| BstKTI | GATC | 3 cut(s) | 181, 312, 490 |
| BstMBI | GATC | 3 cut(s) | 178, 309, 487 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 289, 336, 449 |
| BstX2I | RGATCY | 1 cut(s) | 309 |
| BstYI | RGATCY | 1 cut(s) | 309 |
| Bsu15I | ATCGAT | 1 cut(s) | 462 |
| BsuI | GTATCC | 1 cut(s) | 457 |
| BsuRI | GGCC | 2 cut(s) | 221, 339 |
| BsuTUI | ATCGAT | 1 cut(s) | 462 |
| BtsCI | GGATG | 2 cut(s) | 343, 371 |
| Cac8I | GCNNGC | 1 cut(s) | 408 |
| Cfr10I | RCCGGY | 1 cut(s) | 406 |
| ClaI | ATCGAT | 1 cut(s) | 462 |
| CseI | GACGC | 1 cut(s) | 395 |
| DdeI | CTNAG | 2 cut(s) | 231, 481 |
| DpnI | GATC | 3 cut(s) | 180, 311, 489 |
| DpnII | GATC | 3 cut(s) | 178, 309, 487 |
| EaeI | YGGCCR | 2 cut(s) | 219, 337 |
| Eam1104I | CTCTTC | 5 cut(s) | 45, 361, 373, 382, 439 |
| EarI | CTCTTC | 5 cut(s) | 45, 361, 373, 382, 439 |
| EciI | GGCGGA | 2 cut(s) | 427, 439 |
| Eco57I | CTGAAG | 2 cut(s) | 26, 186 |
| FaiI | YATR | 4 cut(s) | 74, 132, 215, 263 |
| FbaI | TGATCA | 1 cut(s) | 178 |
| Fnu4HI | GCNGC | 2 cut(s) | 124, 441 |
| FokI | GGATG | 2 cut(s) | 330, 358 |
| Fsp4HI | GCNGC | 2 cut(s) | 124, 441 |
| GluI | GCNGC | 2 cut(s) | 124, 441 |
| HaeIII | GGCC | 2 cut(s) | 221, 339 |
| HapII | CCGG | 1 cut(s) | 407 |
| HgaI | GACGC | 1 cut(s) | 395 |
| HincII | GTYRAC | 1 cut(s) | 228 |
| HindII | GTYRAC | 1 cut(s) | 228 |
| HinfI | GANTC | 7 cut(s) | 58, 152, 210, 229, 431, 473, 479 |
| HpaII | CCGG | 1 cut(s) | 407 |
| Hpy166II | GTNNAC | 1 cut(s) | 228 |
| Hpy188I | TCNGA | 5 cut(s) | 90, 234, 385, 478, 484 |
| Hpy188III | TCNNGA | 4 cut(s) | 176, 204, 307, 470 |
| Hpy8I | GTNNAC | 1 cut(s) | 228 |
| Hpy99I | CGWCG | 1 cut(s) | 389 |
| HpyAV | CCTTC | 2 cut(s) | 268, 403 |
| HpyCH4V | TGCA | 2 cut(s) | 265, 421 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 289, 336, 449 |
| HpyF3I | CTNAG | 2 cut(s) | 231, 481 |
| KroI | GCCGGC | 1 cut(s) | 406 |
| KroNI | GCCGGC | 1 cut(s) | 408 |
| Ksp22I | TGATCA | 1 cut(s) | 178 |
| Kzo9I | GATC | 3 cut(s) | 178, 309, 487 |
| LmnI | GCTCC | 1 cut(s) | 424 |
| LpnPI | CCDG | 7 cut(s) | 83, 162, 189, 189, 320, 407, 420 |
| MalI | GATC | 3 cut(s) | 180, 311, 489 |
| MboI | GATC | 3 cut(s) | 178, 309, 487 |
| MflI | RGATCY | 1 cut(s) | 309 |
| MhlI | GDGCHC | 1 cut(s) | 429 |
| MluCI | AATT | 3 cut(s) | 49, 81, 286 |
| MlyI | GAGTC | 4 cut(s) | 219, 223, 425, 473 |
| MmeI | TCCRAC | 1 cut(s) | 408 |
| MnlI | CCTC | 5 cut(s) | 183, 232, 376, 385, 501 |
| MroNI | GCCGGC | 1 cut(s) | 406 |
| MspI | CCGG | 1 cut(s) | 407 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 289, 336, 449 |
| NaeI | GCCGGC | 1 cut(s) | 408 |
| NdeII | GATC | 3 cut(s) | 178, 309, 487 |
| NgoMIV | GCCGGC | 1 cut(s) | 406 |
| NmeAIII | GCCGAG | 2 cut(s) | 247, 315 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 321, 468 |
| PdiI | GCCGGC | 1 cut(s) | 408 |
| PfeI | GAWTC | 3 cut(s) | 58, 152, 473 |
| PkrI | GCNGC | 2 cut(s) | 125, 442 |
| PleI | GAGTC | 4 cut(s) | 218, 223, 425, 473 |
| PpsI | GAGTC | 4 cut(s) | 218, 223, 425, 473 |
| PsuI | RGATCY | 1 cut(s) | 309 |
| SatI | GCNGC | 2 cut(s) | 124, 441 |
| Sau3AI | GATC | 3 cut(s) | 178, 309, 487 |
| SchI | GAGTC | 4 cut(s) | 219, 223, 425, 473 |
| SduI | GDGCHC | 1 cut(s) | 429 |
| SetI | ASST | 7 cut(s) | 112, 138, 151, 175, 243, 332, 504 |
| Sse9I | AATT | 3 cut(s) | 49, 81, 286 |
| SsiI | CCGC | 5 cut(s) | 31, 123, 438, 441, 450 |
| TaqI | TCGA | 2 cut(s) | 414, 462 |
| TasI | AATT | 3 cut(s) | 49, 81, 286 |
| TauI | GCSGC | 2 cut(s) | 126, 443 |
| TfiI | GAWTC | 3 cut(s) | 58, 152, 473 |
| TspDTI | ATGAA | 1 cut(s) | 360 |