Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004904.1

Orthogroup ID

OG0025589

Physical Location & Seq

Genomic Coordinates Forward (+)

152628 .. 155520

Gene Structure 2893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atgatggtgaataaaaaagactctggagtcccactgggcgtgccaaaatgtttggctccaaaaccagctggtgtgcaaacagtctcttttgggcgagtggttgcgcaggcgtgccagcaccgcggggtgcagtcgttggggacttctttgccttacgcgggtaagggctttggatgtggtctctttgcgttcaccaaatcgatactcaacttgaaagccgagcagagcaatcactgggaagttggagaggaacacgggtacgctgcattggcccccctttattatcaaggtgcagcagtggcagtcattgtgtatgatataacaagcccagactctttcaacaaagaacggtgttggatcaagggtctccctgccgagttggctcataataagagactccagaatctggatttggggaataatgtgatcacaagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0006810 GO:0008150 GO:0010008 GO:0010009 GO:0012505 GO:0016020 GO:0016192 GO:0016462 GO:0016482 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0031090 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045022 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0097708 GO:0098552 GO:0098562 GO:0098588 GO:0098805 GO:0098927

KEGG Pathways

Metabolic & Signaling

ko04014 ko04144 ko04145 ko04962 ko05014 ko05146 ko05152 map04014 map04144 map04145 map04962 map05014 map05146 map05152

Pfam Domains

Protein Families

Ras

Protein Analysis

145

Amino Acids

15.61

Weight (kDa)

9.12

Isoelectric Point (pI)

48.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	86 - 126	1e-06	Ras family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0025589)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004904.1_g000033
rosa_roxburghii	Rroxscaffold_2G00134980
rosa_samantha	Rh2CG207600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	26
Acc16I	TGCGCA	1 cut(s)	105
AccB7I	CCANNNNNTGG	1 cut(s)	406
AccII	CGCG	2 cut(s)	123, 158
AciI	CCGC	3 cut(s)	121, 123, 158
AclWI	GGATC	1 cut(s)	365
AfaI	GTAC	1 cut(s)	260
AfiI	CCNNNNNNNGG	2 cut(s)	158, 406
AgsI	TTSAA	2 cut(s)	214, 340
AjuI	GAANNNNNNNTTGG	2 cut(s)	395, 427
AluBI	AGCT	1 cut(s)	68
AluI	AGCT	1 cut(s)	68
Alw26I	GTCTC	4 cut(s)	88, 185, 371, 388
AlwI	GGATC	1 cut(s)	365
AlwNI	CAGNNNCTG	1 cut(s)	406
AoxI	GGCC	1 cut(s)	270
ApeKI	GCWGC	2 cut(s)	263, 293
AspLEI	GCGC	1 cut(s)	106
AspS9I	GGNCC	1 cut(s)	271
AsuHPI	GGTGA	2 cut(s)	19, 184
BbvI	GCAGC	2 cut(s)	250, 305
BclI	TGATCA	1 cut(s)	426
BcoDI	GTCTC	4 cut(s)	88, 185, 371, 388
BglI	GCCNNNNNGGC	1 cut(s)	380
BisI	GCNGC	2 cut(s)	264, 294
BlsI	GCNGC	2 cut(s)	265, 295
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	2 cut(s)	57, 273
BmrI	ACTGGG	2 cut(s)	44, 244
BmuI	ACTGGG	2 cut(s)	44, 244
BpmI	CTGGAG	2 cut(s)	45, 383
Bsa29I	ATCGAT	1 cut(s)	200
BsaI	GGTCTC	2 cut(s)	185, 371
BsaJI	CCNNGG	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 406
Bse1I	ACTGG	2 cut(s)	39, 239
BseCI	ATCGAT	1 cut(s)	200
BseDI	CCNNGG	1 cut(s)	121
BseGI	GGATG	1 cut(s)	179
BseLI	CCNNNNNNNGG	2 cut(s)	158, 406
BseNI	ACTGG	2 cut(s)	39, 239
BseXI	GCAGC	2 cut(s)	250, 305
BsgI	GTGCAG	2 cut(s)	149, 312
Bsh1236I	CGCG	2 cut(s)	123, 158
BshFI	GGCC	1 cut(s)	272
BshVI	ATCGAT	1 cut(s)	200
BslFI	GGGAC	2 cut(s)	14, 154
BslI	CCNNNNNNNGG	2 cut(s)	158, 406
BsmAI	GTCTC	4 cut(s)	88, 185, 371, 388
BsmFI	GGGAC	2 cut(s)	14, 154
BsnI	GGCC	1 cut(s)	272
Bso31I	GGTCTC	2 cut(s)	185, 371
Bsp143I	GATC	2 cut(s)	357, 426
BspACI	CCGC	3 cut(s)	121, 123, 158
BspANI	GGCC	1 cut(s)	272
BspDI	ATCGAT	1 cut(s)	200
BspFNI	CGCG	2 cut(s)	123, 158
BspLI	GGNNCC	2 cut(s)	57, 273
BspPI	GGATC	1 cut(s)	365
BspTNI	GGTCTC	2 cut(s)	185, 371
BsrI	ACTGG	2 cut(s)	39, 239
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	2 cut(s)	357, 426
Bst4CI	ACNGT	2 cut(s)	82, 351
BstC8I	GCNNGC	4 cut(s)	41, 108, 112, 116
BstDSI	CCRYGG	1 cut(s)	121
BstF5I	GGATG	1 cut(s)	179
BstFNI	CGCG	2 cut(s)	123, 158
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	2 cut(s)	360, 429
BstMAI	GTCTC	4 cut(s)	88, 185, 371, 388
BstMBI	GATC	2 cut(s)	357, 426
BstMWI	GCNNNNNNNGC	4 cut(s)	120, 269, 299, 380
BstUI	CGCG	2 cut(s)	123, 158
BstV1I	GCAGC	2 cut(s)	250, 305
Bsu15I	ATCGAT	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	272
BsuTUI	ATCGAT	1 cut(s)	200
BtgI	CCRYGG	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	179
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	3 cut(s)	32, 232, 303
Cac8I	GCNNGC	4 cut(s)	41, 108, 112, 116
CaiI	CAGNNNCTG	1 cut(s)	406
CfoI	GCGC	1 cut(s)	106
Cfr13I	GGNCC	1 cut(s)	271
Cfr42I	CCGCGG	1 cut(s)	124
ClaI	ATCGAT	1 cut(s)	200
Csp6I	GTAC	1 cut(s)	259
CviJI	RGCY	7 cut(s)	56, 68, 168, 218, 272, 327, 383
CviKI_1	RGCY	7 cut(s)	56, 68, 168, 218, 272, 327, 383
CviQI	GTAC	1 cut(s)	259
DpnI	GATC	2 cut(s)	359, 428
DpnII	GATC	2 cut(s)	357, 426
DrdI	GACNNNNNNGTC	1 cut(s)	26
DseDI	GACNNNNNNGTC	1 cut(s)	26
Eco31I	GGTCTC	2 cut(s)	185, 371
FaiI	YATR	3 cut(s)	315, 320, 387
FaqI	GGGAC	2 cut(s)	14, 154
FauI	CCCGC	2 cut(s)	116, 151
FbaI	TGATCA	1 cut(s)	426
Fnu4HI	GCNGC	2 cut(s)	264, 294
FokI	GGATG	1 cut(s)	186
Fsp4HI	GCNGC	2 cut(s)	264, 294
FspI	TGCGCA	1 cut(s)	105
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	2 cut(s)	264, 294
GsuI	CTGGAG	2 cut(s)	45, 383
HaeIII	GGCC	1 cut(s)	272
HhaI	GCGC	1 cut(s)	106
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HinfI	GANTC	5 cut(s)	20, 27, 332, 396, 403
HphI	GGTGA	2 cut(s)	19, 184
Hpy166II	GTNNAC	1 cut(s)	192
Hpy188III	TCNNGA	3 cut(s)	24, 400, 407
Hpy8I	GTNNAC	1 cut(s)	192
HpyCH4III	ACNGT	2 cut(s)	82, 351
HpyCH4V	TGCA	4 cut(s)	76, 130, 266, 293
HpyF10VI	GCNNNNNNNGC	4 cut(s)	120, 269, 299, 380
HspAI	GCGC	1 cut(s)	104
Ksp22I	TGATCA	1 cut(s)	426
KspI	CCGCGG	1 cut(s)	124
Kzo9I	GATC	2 cut(s)	357, 426
LmnI	GCTCC	1 cut(s)	61
Lsp1109I	GCAGC	2 cut(s)	250, 305
MalI	GATC	2 cut(s)	359, 428
MboI	GATC	2 cut(s)	357, 426
MlyI	GAGTC	4 cut(s)	14, 36, 326, 390
MmeI	TCCRAC	2 cut(s)	223, 335
MnlI	CCTC	1 cut(s)	241
MspA1I	CMGCKG	2 cut(s)	68, 123
MvnI	CGCG	2 cut(s)	123, 158
MwoI	GCNNNNNNNGC	4 cut(s)	120, 269, 299, 380
NdeII	GATC	2 cut(s)	357, 426
NlaIV	GGNNCC	2 cut(s)	57, 273
NmeAIII	GCCGAG	2 cut(s)	244, 400
NsbI	TGCGCA	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	403
PflMI	CCANNNNNTGG	1 cut(s)	406
PkrI	GCNGC	2 cut(s)	265, 295
PleI	GAGTC	4 cut(s)	14, 35, 326, 390
PpsI	GAGTC	4 cut(s)	14, 35, 326, 390
PspN4I	GGNNCC	2 cut(s)	57, 273
PspPI	GGNCC	1 cut(s)	271
PstNI	CAGNNNCTG	1 cut(s)	406
PvuII	CAGCTG	1 cut(s)	68
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
SacII	CCGCGG	1 cut(s)	124
SatI	GCNGC	2 cut(s)	264, 294
Sau3AI	GATC	2 cut(s)	357, 426
Sau96I	GGNCC	1 cut(s)	271
SchI	GAGTC	4 cut(s)	14, 36, 326, 390
SetI	ASST	2 cut(s)	70, 292
Sfr303I	CCGCGG	1 cut(s)	124
SgrBI	CCGCGG	1 cut(s)	124
SsiI	CCGC	3 cut(s)	121, 123, 158
TaaI	ACNGT	2 cut(s)	82, 351
TaqI	TCGA	1 cut(s)	200
TfiI	GAWTC	1 cut(s)	403
TscAI	CASTG	3 cut(s)	39, 239, 303
TseI	GCWGC	2 cut(s)	263, 293
TspRI	CASTG	3 cut(s)	39, 239, 303
Van91I	CCANNNNNTGG	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.