Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0025589

Physical Location & Seq

Genomic Coordinates Reverse (-)

20203012 .. 20205473

Gene Structure 2462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG207600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGCTGCTAGATTTTACAAGTGGTTTACAGAGGATAAAGAGAAAGAAGCATGGCTTCAAAATATTCAATGCGGAGTATTTGGTCTTGGGAATAGGCAATATGAACATTTCAATAAGGTGGCCGTGGTTGTGGATGAGATCCTCGCTGTTCAAGGTTGGAGCTGTTGTTGGATTTGACCGATATGTCAACTACTTCAAAATTGAGTACTCTGCATTGGCCCCTCTTTATTATCAAGGTGCAGCAGTGCCAGTCATTGTATATAATATAACAAGCCCAGACTCTTTCAACAAAGAACAGTGTTGGATCAAGGGTCTCCCTGCTGAGTTGGCTCATAATAAGAGACTCGAGAATCTGGATTTGGGGAATAATGTGATCACAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0006810 GO:0008150 GO:0010008 GO:0010009 GO:0012505 GO:0016020 GO:0016192 GO:0016462 GO:0016482 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0031090 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045022 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0097708 GO:0098552 GO:0098562 GO:0098588 GO:0098805 GO:0098927

KEGG Pathways

Metabolic & Signaling

ko04014 ko04144 ko04145 ko04962 ko05014 ko05146 ko05152 map04014 map04144 map04145 map04962 map05014 map05146 map05152

Pfam Domains

Protein Families

Ras

Protein Analysis

127

Amino Acids

14.67

Weight (kDa)

9.68

Isoelectric Point (pI)

46.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0025589)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004904.1_g000033
rosa_roxburghii	Rroxscaffold_2G00134980
rosa_samantha	Rh2CG207600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	182
AciI	CCGC	1 cut(s)	71
AclWI	GGATC	2 cut(s)	132, 311
AcoI	YGGCCR	1 cut(s)	119
AfaI	GTAC	1 cut(s)	206
AgsI	TTSAA	6 cut(s)	58, 67, 111, 151, 196, 286
AjuI	GAANNNNNNNTTGG	2 cut(s)	341, 373
AluBI	AGCT	1 cut(s)	161
AluI	AGCT	1 cut(s)	161
Alw26I	GTCTC	2 cut(s)	317, 334
AlwI	GGATC	2 cut(s)	132, 311
Ama87I	CYCGRG	1 cut(s)	344
AoxI	GGCC	2 cut(s)	119, 216
ApeKI	GCWGC	2 cut(s)	4, 239
AspS9I	GGNCC	1 cut(s)	217
AvaI	CYCGRG	1 cut(s)	344
BbvI	GCAGC	1 cut(s)	251
BceAI	ACGGC	1 cut(s)	106
BclI	TGATCA	1 cut(s)	372
BcoDI	GTCTC	2 cut(s)	317, 334
BfaI	CTAG	1 cut(s)	8
BisI	GCNGC	2 cut(s)	5, 240
BlsI	GCNGC	2 cut(s)	6, 241
BmcAI	AGTACT	1 cut(s)	206
BmeT110I	CYCGRG	1 cut(s)	344
BmgT120I	GGNCC	1 cut(s)	217
BmiI	GGNNCC	1 cut(s)	219
BsaI	GGTCTC	1 cut(s)	317
BsaJI	CCNNGG	1 cut(s)	122
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bse1I	ACTGG	1 cut(s)	248
BseDI	CCNNGG	1 cut(s)	122
BseGI	GGATG	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	1 cut(s)	248
BseXI	GCAGC	1 cut(s)	251
BsgI	GTGCAG	1 cut(s)	258
BshFI	GGCC	2 cut(s)	121, 218
BsiHKCI	CYCGRG	1 cut(s)	344
BsmAI	GTCTC	2 cut(s)	317, 334
BsnI	GGCC	2 cut(s)	121, 218
Bso31I	GGTCTC	1 cut(s)	317
BsoBI	CYCGRG	1 cut(s)	344
Bsp143I	GATC	3 cut(s)	137, 303, 372
BspACI	CCGC	1 cut(s)	71
BspANI	GGCC	2 cut(s)	121, 218
BspCNI	CTCAG	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	219
BspPI	GGATC	2 cut(s)	132, 311
BspTNI	GGTCTC	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	248
BssECI	CCNNGG	1 cut(s)	122
BssMI	GATC	3 cut(s)	137, 303, 372
Bst4CI	ACNGT	1 cut(s)	297
BstDEI	CTNAG	1 cut(s)	321
BstDSI	CCRYGG	1 cut(s)	122
BstF5I	GGATG	1 cut(s)	138
BstKTI	GATC	3 cut(s)	140, 306, 375
BstMAI	GTCTC	2 cut(s)	317, 334
BstMBI	GATC	3 cut(s)	137, 303, 372
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstV1I	GCAGC	1 cut(s)	251
BstX2I	RGATCY	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	137
BsuRI	GGCC	2 cut(s)	121, 218
BtgI	CCRYGG	1 cut(s)	122
BtsCI	GGATG	1 cut(s)	138
BtsI	GCAGTG	1 cut(s)	249
BtsIMutI	CAGTG	2 cut(s)	249, 302
Cfr13I	GGNCC	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	1 cut(s)	50
CviJI	RGCY	6 cut(s)	54, 121, 161, 218, 273, 329
CviKI_1	RGCY	6 cut(s)	54, 121, 161, 218, 273, 329
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	3 cut(s)	139, 305, 374
DpnII	GATC	3 cut(s)	137, 303, 372
DrdI	GACNNNNNNGTC	1 cut(s)	182
DseDI	GACNNNNNNGTC	1 cut(s)	182
EaeI	YGGCCR	1 cut(s)	119
Eco31I	GGTCTC	1 cut(s)	317
Eco88I	CYCGRG	1 cut(s)	344
FaeI	CATG	1 cut(s)	53
FaiI	YATR	7 cut(s)	51, 101, 183, 259, 261, 266, 333
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FatI	CATG	1 cut(s)	49
FbaI	TGATCA	1 cut(s)	372
Fnu4HI	GCNGC	2 cut(s)	5, 240
FokI	GGATG	1 cut(s)	145
Fsp4HI	GCNGC	2 cut(s)	5, 240
FspBI	CTAG	1 cut(s)	8
GluI	GCNGC	2 cut(s)	5, 240
HaeIII	GGCC	2 cut(s)	121, 218
Hin1II	CATG	1 cut(s)	53
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	3 cut(s)	278, 342, 349
Hpy166II	GTNNAC	2 cut(s)	26, 187
Hpy188III	TCNNGA	2 cut(s)	346, 353
Hpy8I	GTNNAC	2 cut(s)	26, 187
HpyCH4III	ACNGT	1 cut(s)	297
HpyCH4V	TGCA	2 cut(s)	212, 239
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpyF3I	CTNAG	1 cut(s)	321
Hsp92II	CATG	1 cut(s)	53
Ksp22I	TGATCA	1 cut(s)	372
Kzo9I	GATC	3 cut(s)	137, 303, 372
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	4 cut(s)	261, 288, 330, 338
Lsp1109I	GCAGC	1 cut(s)	251
MaeI	CTAG	1 cut(s)	8
MalI	GATC	3 cut(s)	139, 305, 374
MboI	GATC	3 cut(s)	137, 303, 372
MflI	RGATCY	1 cut(s)	137
MluCI	AATT	1 cut(s)	198
MlyI	GAGTC	2 cut(s)	272, 336
MmeI	TCCRAC	3 cut(s)	136, 148, 281
MnlI	CCTC	3 cut(s)	24, 151, 231
MwoI	GCNNNNNNNGC	1 cut(s)	326
NdeII	GATC	3 cut(s)	137, 303, 372
NlaIII	CATG	1 cut(s)	53
NlaIV	GGNNCC	1 cut(s)	219
PaeR7I	CTCGAG	1 cut(s)	344
PfeI	GAWTC	1 cut(s)	349
PkrI	GCNGC	2 cut(s)	6, 241
PleI	GAGTC	2 cut(s)	272, 336
PpsI	GAGTC	2 cut(s)	272, 336
PspN4I	GGNNCC	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	217
PsuI	RGATCY	1 cut(s)	137
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
SatI	GCNGC	2 cut(s)	5, 240
Sau3AI	GATC	3 cut(s)	137, 303, 372
Sau96I	GGNCC	1 cut(s)	217
ScaI	AGTACT	1 cut(s)	206
SchI	GAGTC	2 cut(s)	272, 336
SetI	ASST	4 cut(s)	119, 156, 163, 238
Sfr274I	CTCGAG	1 cut(s)	344
SlaI	CTCGAG	1 cut(s)	344
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	1 cut(s)	198
SsiI	CCGC	1 cut(s)	71
SspI	AATATT	1 cut(s)	63
SspMI	CTAG	1 cut(s)	8
TaaI	ACNGT	1 cut(s)	297
TaqI	TCGA	1 cut(s)	345
TaqII	GACCGA	1 cut(s)	192
TasI	AATT	1 cut(s)	198
TatI	WGTACW	1 cut(s)	204
TfiI	GAWTC	1 cut(s)	349
TscAI	CASTG	2 cut(s)	249, 302
TseI	GCWGC	2 cut(s)	4, 239
TspDTI	ATGAA	1 cut(s)	116
TspRI	CASTG	2 cut(s)	249, 302
XhoI	CTCGAG	1 cut(s)	344
XspI	CTAG	1 cut(s)	8
ZrmI	AGTACT	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.