Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0025589

Physical Location & Seq

Genomic Coordinates Forward (+)

72634037 .. 72639661

Gene Structure 5625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00134980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCGGCGATCGAGTGCTCGAAGCCCGGGGTTGTCCGGCCTCTTAAGCCGTCGATCATCACGGAGCACCGAGCCGAGCTTGACGATGGAAGTAAGAAGGTCACAATCTTCTTCGGCACGCAAACCGATGCTGCCGAGGATTTGCCAAGATATGGTGATGGTGAGCCGACGGATAATGCTGCTAGATTTTACAAGTGGTTTACAGAGGTTGGAGCTGTTGTTGGATTTGACCGATATGTCAACTACTTCAAAATTGAGTACGCTGCATTGGCCCCCCTTTATTATCAAGGTGCAGCAGTGGCAGTCATTGTATATGATATAACAAGCCCAGACTCTTTCAACAAACAACAGTGTTGGATCAAGGGTCTCCCTGCTAAGTTGGCTTATAATAAGAAACTCCAGAATCTGGATTTGGGGAATAATGTGATCGCAAGATGGTCAGATCTGAAGGACAGTGTTCCTGCCTATATGATCCCTTATGTTCTGATGCACCTAGTTGGAGAAGCCAAAGGGATTGAAGGACATTATCTGCTTGCTTTGGTGTTCTTCATATTGAAGTACATAACTTCTGGTCTATATACTATATTTGGAGGCCTTCTGGCAATTAGCTGCTTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003958 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006725 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009698 GO:0009987 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0019748 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0071704 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_1 Flavodoxin_1 NAD_binding_1

Protein Analysis

206

Amino Acids

22.9

Weight (kDa)

6.29

Isoelectric Point (pI)

44.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	86 - 127	1e-06	Ras family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025589)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004904.1_g000033
rosa_roxburghii	Rroxscaffold_2G00134980
rosa_samantha	Rh2CG207600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	387
AasI	GACNNNNNNGTC	1 cut(s)	236
AccB7I	CCANNNNNTGG	2 cut(s)	152, 406
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	2 cut(s)	365, 466
AcuI	CTGAAG	1 cut(s)	467
AfaI	GTAC	2 cut(s)	260, 560
AfiI	CCNNNNNNNGG	2 cut(s)	152, 406
AflII	CTTAAG	1 cut(s)	44
AgsI	TTSAA	4 cut(s)	250, 340, 518, 556
AjuI	GAANNNNNNNTTGG	2 cut(s)	395, 427
AluBI	AGCT	3 cut(s)	79, 215, 609
AluI	AGCT	3 cut(s)	79, 215, 609
Alw21I	GWGCWC	2 cut(s)	20, 69
Alw26I	GTCTC	1 cut(s)	371
AlwI	GGATC	2 cut(s)	365, 466
AlwNI	CAGNNNCTG	1 cut(s)	406
Ama87I	CYCGRG	1 cut(s)	26
AoxI	GGCC	3 cut(s)	38, 270, 592
ApeKI	GCWGC	5 cut(s)	131, 179, 263, 293, 609
AspS9I	GGNCC	1 cut(s)	271
AsuC2I	CCSGG	2 cut(s)	27, 28
AsuHPI	GGTGA	2 cut(s)	167, 173
AvaI	CYCGRG	1 cut(s)	26
Bbv12I	GWGCWC	2 cut(s)	20, 69
BbvI	GCAGC	5 cut(s)	118, 166, 250, 305, 596
BccI	CCATC	3 cut(s)	80, 152, 429
BceAI	ACGGC	1 cut(s)	34
BcnI	CCSGG	2 cut(s)	27, 28
BcoDI	GTCTC	1 cut(s)	371
BfaI	CTAG	2 cut(s)	183, 494
BfrI	CTTAAG	1 cut(s)	44
BglII	AGATCT	1 cut(s)	442
BisI	GCNGC	6 cut(s)	6, 132, 180, 264, 294, 610
BlsI	GCNGC	6 cut(s)	7, 133, 181, 265, 295, 611
Bme1390I	CCNGG	2 cut(s)	27, 28
BmeT110I	CYCGRG	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	1 cut(s)	273
BmrFI	CCNGG	2 cut(s)	27, 28
BmsI	GCATC	2 cut(s)	118, 477
BpmI	CTGGAG	1 cut(s)	383
BpuMI	CCSGG	2 cut(s)	27, 28
BsaI	GGTCTC	1 cut(s)	371
BsaJI	CCNNGG	3 cut(s)	26, 27, 135
BsaXI	ACNNNNNCTCC	2 cut(s)	204, 234
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 406
BseDI	CCNNGG	3 cut(s)	26, 27, 135
BseLI	CCNNNNNNNGG	2 cut(s)	152, 406
BseXI	GCAGC	5 cut(s)	118, 166, 250, 305, 596
BsgI	GTGCAG	1 cut(s)	312
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	3 cut(s)	40, 272, 594
BsiEI	CGRYCG	1 cut(s)	12
BsiHKAI	GWGCWC	2 cut(s)	20, 69
BsiHKCI	CYCGRG	1 cut(s)	26
BsiSI	CCGG	2 cut(s)	27, 37
BslI	CCNNNNNNNGG	2 cut(s)	152, 406
BsmAI	GTCTC	1 cut(s)	371
BsnI	GGCC	3 cut(s)	40, 272, 594
Bso31I	GGTCTC	1 cut(s)	371
BsoBI	CYCGRG	1 cut(s)	26
Bsp1286I	GDGCHC	2 cut(s)	20, 69
Bsp143I	GATC	6 cut(s)	9, 54, 357, 426, 442, 471
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	3 cut(s)	40, 272, 594
BspLI	GGNNCC	1 cut(s)	273
BspPI	GGATC	2 cut(s)	365, 466
BspTI	CTTAAG	1 cut(s)	44
BspTNI	GGTCTC	1 cut(s)	371
BssECI	CCNNGG	3 cut(s)	26, 27, 135
BssMI	GATC	6 cut(s)	9, 54, 357, 426, 442, 471
Bst4CI	ACNGT	2 cut(s)	351, 455
BstAFI	CTTAAG	1 cut(s)	44
BstC8I	GCNNGC	2 cut(s)	119, 534
BstDEI	CTNAG	2 cut(s)	375, 618
BstKTI	GATC	6 cut(s)	12, 57, 360, 429, 445, 474
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	6 cut(s)	9, 54, 357, 426, 442, 471
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	4 cut(s)	46, 269, 299, 380
BstSCI	CCNGG	2 cut(s)	25, 26
BstV1I	GCAGC	5 cut(s)	118, 166, 250, 305, 596
BstX2I	RGATCY	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	442
BsuRI	GGCC	3 cut(s)	40, 272, 594
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	3 cut(s)	303, 356, 460
Cac8I	GCNNGC	2 cut(s)	119, 534
CaiI	CAGNNNCTG	1 cut(s)	406
Cfr13I	GGNCC	1 cut(s)	271
Cfr9I	CCCGGG	1 cut(s)	26
Csp6I	GTAC	2 cut(s)	259, 559
CviQI	GTAC	2 cut(s)	259, 559
DdeI	CTNAG	2 cut(s)	375, 618
DpnI	GATC	6 cut(s)	11, 56, 359, 428, 444, 473
DpnII	GATC	6 cut(s)	9, 54, 357, 426, 442, 471
DrdI	GACNNNNNNGTC	1 cut(s)	236
DseDI	GACNNNNNNGTC	1 cut(s)	236
Eco147I	AGGCCT	1 cut(s)	594
Eco31I	GGTCTC	1 cut(s)	371
Eco57I	CTGAAG	1 cut(s)	467
Eco88I	CYCGRG	1 cut(s)	26
Fnu4HI	GCNGC	6 cut(s)	6, 132, 180, 264, 294, 610
Fsp4HI	GCNGC	6 cut(s)	6, 132, 180, 264, 294, 610
FspBI	CTAG	2 cut(s)	183, 494
GluI	GCNGC	6 cut(s)	6, 132, 180, 264, 294, 610
GsuI	CTGGAG	1 cut(s)	383
HaeIII	GGCC	3 cut(s)	40, 272, 594
HapII	CCGG	2 cut(s)	27, 37
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	2 cut(s)	332, 403
HpaII	CCGG	2 cut(s)	27, 37
HphI	GGTGA	2 cut(s)	167, 173
Hpy166II	GTNNAC	2 cut(s)	201, 241
Hpy188I	TCNGA	3 cut(s)	442, 447, 486
Hpy188III	TCNNGA	2 cut(s)	400, 407
Hpy8I	GTNNAC	2 cut(s)	201, 241
Hpy99I	CGWCG	2 cut(s)	55, 172
HpyAV	CCTTC	4 cut(s)	91, 442, 512, 605
HpyCH4III	ACNGT	2 cut(s)	351, 455
HpyCH4V	TGCA	3 cut(s)	266, 293, 490
HpyF10VI	GCNNNNNNNGC	4 cut(s)	46, 269, 299, 380
HpyF3I	CTNAG	2 cut(s)	375, 618
Kzo9I	GATC	6 cut(s)	9, 54, 357, 426, 442, 471
LmnI	GCTCC	2 cut(s)	64, 212
LpnPI	CCDG	9 cut(s)	40, 50, 342, 384, 392, 413, 474, 555, 584
Lsp1109I	GCAGC	5 cut(s)	118, 166, 250, 305, 596
LweI	GCATC	2 cut(s)	118, 477
MaeI	CTAG	2 cut(s)	183, 494
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	6 cut(s)	11, 56, 359, 428, 444, 473
MboI	GATC	6 cut(s)	9, 54, 357, 426, 442, 471
MboII	GAAGA	3 cut(s)	100, 103, 538
MflI	RGATCY	1 cut(s)	442
MhlI	GDGCHC	2 cut(s)	20, 69
MluCI	AATT	2 cut(s)	252, 603
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	4 cut(s)	190, 202, 335, 478
MnlI	CCTC	4 cut(s)	51, 130, 199, 584
MseI	TTAA	1 cut(s)	45
MspCI	CTTAAG	1 cut(s)	44
MspI	CCGG	2 cut(s)	27, 37
MspR9I	CCNGG	2 cut(s)	27, 28
MwoI	GCNNNNNNNGC	4 cut(s)	46, 269, 299, 380
NciI	CCSGG	2 cut(s)	27, 28
NdeII	GATC	6 cut(s)	9, 54, 357, 426, 442, 471
NlaIV	GGNNCC	1 cut(s)	273
NmeAIII	GCCGAG	2 cut(s)	100, 160
NmuCI	GTSAC	1 cut(s)	100
PceI	AGGCCT	1 cut(s)	594
PfeI	GAWTC	1 cut(s)	403
PflMI	CCANNNNNTGG	2 cut(s)	152, 406
PkrI	GCNGC	6 cut(s)	7, 133, 181, 265, 295, 611
Ple19I	CGATCG	1 cut(s)	12
PleI	GAGTC	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	326
PsiI	TTATAA	1 cut(s)	387
PspN4I	GGNNCC	1 cut(s)	273
PspPI	GGNCC	1 cut(s)	271
PstNI	CAGNNNCTG	1 cut(s)	406
PsuI	RGATCY	1 cut(s)	442
PvuI	CGATCG	1 cut(s)	12
RsaI	GTAC	2 cut(s)	260, 560
RsaNI	GTAC	2 cut(s)	259, 559
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	6 cut(s)	6, 132, 180, 264, 294, 610
Sau3AI	GATC	6 cut(s)	9, 54, 357, 426, 442, 471
Sau96I	GGNCC	1 cut(s)	271
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	2 cut(s)	27, 28
SduI	GDGCHC	2 cut(s)	20, 69
SetI	ASST	7 cut(s)	81, 102, 210, 217, 292, 495, 611
SfaNI	GCATC	2 cut(s)	118, 477
SmaI	CCCGGG	1 cut(s)	28
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	2 cut(s)	252, 603
SseBI	AGGCCT	1 cut(s)	594
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	2 cut(s)	183, 494
StuI	AGGCCT	1 cut(s)	594
StyD4I	CCNGG	2 cut(s)	25, 26
TaaI	ACNGT	2 cut(s)	351, 455
TaqI	TCGA	3 cut(s)	12, 20, 53
TaqII	GACCGA	1 cut(s)	246
TasI	AATT	2 cut(s)	252, 603
TatI	WGTACW	1 cut(s)	558
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	403
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TscAI	CASTG	3 cut(s)	303, 356, 460
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	5 cut(s)	131, 179, 263, 293, 609
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	1 cut(s)	538
TspGWI	ACGGA	2 cut(s)	77, 185
TspMI	CCCGGG	1 cut(s)	26
TspRI	CASTG	3 cut(s)	303, 356, 460
Van91I	CCANNNNNTGG	2 cut(s)	152, 406
Vha464I	CTTAAG	1 cut(s)	44
XmaI	CCCGGG	1 cut(s)	26
XspI	CTAG	2 cut(s)	183, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.