Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004916.1

Orthogroup ID

OG0022390

Physical Location & Seq

Genomic Coordinates Forward (+)

15388 .. 15838

Gene Structure 451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atgcagaaaatggcacaggaatggttctccggcggcagcaccggcgccggcggcgactctcagcagccggcgtcttctctcttagccgattggaactcctacgccgcttcccaatccgcagaggacagctcctcttccgccctcggcttcgatctcgaatccgcggtccgctccgcgaacgacaccgtggatttgatagtgcgatttgttgatttgtgtacgattcaagtgaaatctgatactggattggtgatgtttgtgtgtatgtgctactgtatgttgatgaatctgaaatcgaagatgaattggattttggggtcttatgagttgattcctttgcttcagtattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000138 GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0006810 GO:0008150 GO:0012505 GO:0016020 GO:0016192 GO:0016197 GO:0016482 GO:0031090 GO:0031984 GO:0031985 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Got1

Protein Analysis

116

Amino Acids

12.63

Weight (kDa)

4.21

Isoelectric Point (pI)

51.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022390)

Species	Orthologous Gene IDs
malus_domestica	MD08G1197900.v1.1 MD11G1050200.v1.1 MD11G1187300.v1.1
rosa_multiflora	Rmu_sc0004916.1_g000004

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	44
AccBSI	CCGCTC	1 cut(s)	171
AccII	CGCG	2 cut(s)	164, 176
AciI	CCGC	9 cut(s)	33, 51, 105, 117, 138, 162, 164, 169, 174
AcuI	CTGAAG	1 cut(s)	326
AcyI	GRCGYC	2 cut(s)	45, 71
AfaI	GTAC	1 cut(s)	220
AgsI	TTSAA	1 cut(s)	227
AjuI	GAANNNNNNNTTGG	2 cut(s)	296, 328
AluBI	AGCT	1 cut(s)	129
AluI	AGCT	1 cut(s)	129
ApeKI	GCWGC	2 cut(s)	36, 64
ArsI	GACNNNNNNTTYG	2 cut(s)	150, 182
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	262
AvaII	GGWCC	1 cut(s)	166
BanI	GGYRCC	1 cut(s)	44
BbsI	GAAGAC	1 cut(s)	66
BbvI	GCAGC	2 cut(s)	48, 76
BfoI	RGCGCY	1 cut(s)	48
BisI	GCNGC	5 cut(s)	34, 37, 52, 65, 105
BlsI	GCNGC	5 cut(s)	35, 38, 53, 66, 106
Bme18I	GGWCC	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	1 cut(s)	46
BpiI	GAAGAC	1 cut(s)	66
BplI	GAGNNNNNCTC	2 cut(s)	113, 145
BsaHI	GRCGYC	2 cut(s)	45, 71
BsaJI	CCNNGG	3 cut(s)	142, 162, 186
Bse118I	RCCGGY	3 cut(s)	41, 47, 67
Bse1I	ACTGG	1 cut(s)	247
BseDI	CCNNGG	3 cut(s)	142, 162, 186
BseMII	CTCAG	1 cut(s)	74
BseNI	ACTGG	1 cut(s)	247
BseRI	GAGGAG	1 cut(s)	121
BseXI	GCAGC	2 cut(s)	48, 76
Bsh1236I	CGCG	2 cut(s)	164, 176
BshNI	GGYRCC	1 cut(s)	44
BsiSI	CCGG	4 cut(s)	30, 42, 48, 68
Bsp143I	GATC	1 cut(s)	151
BspACI	CCGC	9 cut(s)	33, 51, 105, 117, 138, 162, 164, 169, 174
BspCNI	CTCAG	1 cut(s)	73
BspFNI	CGCG	2 cut(s)	164, 176
BspLI	GGNNCC	1 cut(s)	46
BspT107I	GGYRCC	1 cut(s)	44
BsrBI	CCGCTC	1 cut(s)	171
BsrFI	RCCGGY	3 cut(s)	41, 47, 67
BsrI	ACTGG	1 cut(s)	247
BssAI	RCCGGY	3 cut(s)	41, 47, 67
BssECI	CCNNGG	3 cut(s)	142, 162, 186
BssMI	GATC	1 cut(s)	151
BssNI	GRCGYC	2 cut(s)	45, 71
Bst4CI	ACNGT	2 cut(s)	187, 275
Bst6I	CTCTTC	1 cut(s)	139
BstACI	GRCGYC	2 cut(s)	45, 71
BstC8I	GCNNGC	2 cut(s)	49, 69
BstDEI	CTNAG	2 cut(s)	60, 82
BstDSI	CCRYGG	2 cut(s)	162, 186
BstFNI	CGCG	2 cut(s)	164, 176
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	151
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 51
BstUI	CGCG	2 cut(s)	164, 176
BstV1I	GCAGC	2 cut(s)	48, 76
BstV2I	GAAGAC	1 cut(s)	66
BtgI	CCRYGG	2 cut(s)	162, 186
Cac8I	GCNNGC	2 cut(s)	49, 69
CfoI	GCGC	1 cut(s)	47
Cfr10I	RCCGGY	3 cut(s)	41, 47, 67
Cfr13I	GGNCC	1 cut(s)	166
Cfr42I	CCGCGG	1 cut(s)	165
CpoI	CGGWCCG	1 cut(s)	166
CseI	GACGC	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	219
CspI	CGGWCCG	1 cut(s)	166
CviJI	RGCY	4 cut(s)	67, 86, 129, 147
CviKI_1	RGCY	4 cut(s)	67, 86, 129, 147
CviQI	GTAC	1 cut(s)	219
DdeI	CTNAG	2 cut(s)	60, 82
DinI	GGCGCC	1 cut(s)	46
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
EciI	GGCGGA	1 cut(s)	127
Eco47I	GGWCC	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	326
EgeI	GGCGCC	1 cut(s)	46
EheI	GGCGCC	1 cut(s)	46
FaiI	YATR	3 cut(s)	266, 278, 324
Fnu4HI	GCNGC	5 cut(s)	34, 37, 52, 65, 105
Fsp4HI	GCNGC	5 cut(s)	34, 37, 52, 65, 105
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	5 cut(s)	34, 37, 52, 65, 105
HaeII	RGCGCY	1 cut(s)	48
HapII	CCGG	4 cut(s)	30, 42, 48, 68
HgaI	GACGC	1 cut(s)	60
HhaI	GCGC	1 cut(s)	47
Hin1I	GRCGYC	2 cut(s)	45, 71
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HinfI	GANTC	5 cut(s)	56, 158, 223, 286, 331
HpaII	CCGG	4 cut(s)	30, 42, 48, 68
HphI	GGTGA	1 cut(s)	262
Hpy166II	GTNNAC	1 cut(s)	219
Hpy188I	TCNGA	2 cut(s)	238, 291
Hpy188III	TCNNGA	1 cut(s)	155
Hpy8I	GTNNAC	1 cut(s)	219
HpyCH4III	ACNGT	2 cut(s)	187, 275
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 51
HpyF3I	CTNAG	2 cut(s)	60, 82
Hsp92I	GRCGYC	2 cut(s)	45, 71
HspAI	GCGC	1 cut(s)	45
KasI	GGCGCC	1 cut(s)	44
KroI	GCCGGC	2 cut(s)	47, 67
KroNI	GCCGGC	2 cut(s)	49, 69
KspI	CCGCGG	1 cut(s)	165
Kzo9I	GATC	1 cut(s)	151
LmnI	GCTCC	2 cut(s)	134, 176
LpnPI	CCDG	6 cut(s)	2, 43, 55, 61, 81, 228
Lsp1109I	GCAGC	2 cut(s)	48, 76
MalI	GATC	1 cut(s)	153
MbiI	CCGCTC	1 cut(s)	171
MboI	GATC	1 cut(s)	151
MboII	GAAGA	3 cut(s)	66, 126, 310
MluCI	AATT	1 cut(s)	304
Mly113I	GGCGCC	1 cut(s)	45
MlyI	GAGTC	1 cut(s)	50
MnlI	CCTC	3 cut(s)	115, 142, 152
MreI	CGCCGGCG	1 cut(s)	47
MroNI	GCCGGC	2 cut(s)	47, 67
MslI	CAYNNNNRTG	1 cut(s)	19
MspA1I	CMGCKG	1 cut(s)	164
MspI	CCGG	4 cut(s)	30, 42, 48, 68
MvnI	CGCG	2 cut(s)	164, 176
MwoI	GCNNNNNNNGC	2 cut(s)	42, 51
NaeI	GCCGGC	2 cut(s)	49, 69
NarI	GGCGCC	1 cut(s)	45
NdeII	GATC	1 cut(s)	151
NgoMIV	GCCGGC	2 cut(s)	47, 67
NlaIV	GGNNCC	1 cut(s)	46
NmeAIII	GCCGAG	1 cut(s)	123
PdiI	GCCGGC	2 cut(s)	49, 69
PfeI	GAWTC	4 cut(s)	158, 223, 286, 331
PkrI	GCNGC	5 cut(s)	35, 38, 53, 66, 106
PleI	GAGTC	1 cut(s)	50
PluTI	GGCGCC	1 cut(s)	48
PpsI	GAGTC	1 cut(s)	50
PspN4I	GGNNCC	1 cut(s)	46
PspPI	GGNCC	1 cut(s)	166
RsaI	GTAC	1 cut(s)	220
RsaNI	GTAC	1 cut(s)	219
RseI	CAYNNNNRTG	1 cut(s)	19
Rsr2I	CGGWCCG	1 cut(s)	166
RsrII	CGGWCCG	1 cut(s)	166
SacII	CCGCGG	1 cut(s)	165
SatI	GCNGC	5 cut(s)	34, 37, 52, 65, 105
Sau3AI	GATC	1 cut(s)	151
Sau96I	GGNCC	1 cut(s)	166
SchI	GAGTC	1 cut(s)	50
SetI	ASST	1 cut(s)	131
SfoI	GGCGCC	1 cut(s)	46
Sfr303I	CCGCGG	1 cut(s)	165
SgrAI	CRCCGGYG	2 cut(s)	41, 47
SgrBI	CCGCGG	1 cut(s)	165
SinI	GGWCC	1 cut(s)	166
SmiMI	CAYNNNNRTG	1 cut(s)	19
Sse9I	AATT	1 cut(s)	304
SsiI	CCGC	9 cut(s)	33, 51, 105, 117, 138, 162, 164, 169, 174
SspDI	GGCGCC	1 cut(s)	44
TaaI	ACNGT	2 cut(s)	187, 275
TaqI	TCGA	3 cut(s)	150, 156, 296
TasI	AATT	1 cut(s)	304
TauI	GCSGC	3 cut(s)	36, 54, 107
TfiI	GAWTC	4 cut(s)	158, 223, 286, 331
TseI	GCWGC	2 cut(s)	36, 64
TspDTI	ATGAA	2 cut(s)	299, 317
VpaK11BI	GGWCC	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.