Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004955.1

Orthogroup ID

OG0031328

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 525

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004955.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 334 bp

gcaggcagagctagaaactgctacggctgaggggaggttggtcactctcacattaacatccggagccttaatcgagatacctgtaggagctaggtttattgggattccaggtacagaatccacagaaaatccaagaggagttatggtagaagtttactgggtgcaagatgattctggttccctctgcatttcaggccactcacctgaaactccaatacctccaaatgttgaaccaatgccttccttggcacctacttcacgccgcaatctgttaccagttcatggagttgtaatccaccctgatcaaatgagtaataccaccacctctcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

110

Amino Acids

11.68

Weight (kDa)

4.81

Isoelectric Point (pI)

46.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031328)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004955.1_g000001
rosa_samantha	Rh7BG019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	248
AccB7I	CCANNNNNTGG	1 cut(s)	282
AccIII	TCCGGA	1 cut(s)	60
AciI	CCGC	1 cut(s)	263
AfaI	GTAC	1 cut(s)	113
AfiI	CCNNNNNNNGG	1 cut(s)	282
AgsI	TTSAA	1 cut(s)	231
AjnI	CCWGG	1 cut(s)	107
AluBI	AGCT	2 cut(s)	11, 90
AluI	AGCT	2 cut(s)	11, 90
Aor13HI	TCCGGA	1 cut(s)	60
AoxI	GGCC	1 cut(s)	194
AsuHPI	GGTGA	1 cut(s)	193
BanI	GGYRCC	1 cut(s)	248
BbvCI	CCTCAGC	1 cut(s)	28
BceAI	ACGGC	1 cut(s)	40
BciT130I	CCWGG	1 cut(s)	109
BclI	TGATCA	1 cut(s)	302
BfaI	CTAG	2 cut(s)	12, 91
BfmI	CTRYAG	1 cut(s)	82
BisI	GCNGC	1 cut(s)	263
BlsI	GCNGC	1 cut(s)	264
Bme1390I	CCNGG	1 cut(s)	109
BmiI	GGNNCC	3 cut(s)	65, 179, 250
BmrFI	CCNGG	1 cut(s)	109
BmrI	ACTGGG	1 cut(s)	167
BmuI	ACTGGG	1 cut(s)	167
Bpu10I	CCTNAGC	1 cut(s)	28
BsaJI	CCNNGG	1 cut(s)	244
BsaWI	WCCGGW	1 cut(s)	60
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
Bse1I	ACTGG	2 cut(s)	162, 276
BseAI	TCCGGA	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	109
BseDI	CCNNGG	1 cut(s)	244
BseGI	GGATG	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	19
BseNI	ACTGG	2 cut(s)	162, 276
BseRI	GAGGAG	1 cut(s)	151
BshFI	GGCC	1 cut(s)	196
BshNI	GGYRCC	1 cut(s)	248
BsiSI	CCGG	1 cut(s)	61
BslI	CCNNNNNNNGG	1 cut(s)	282
BsnI	GGCC	1 cut(s)	196
Bsp13I	TCCGGA	1 cut(s)	60
Bsp143I	GATC	1 cut(s)	302
BspACI	CCGC	1 cut(s)	263
BspANI	GGCC	1 cut(s)	196
BspCNI	CTCAG	1 cut(s)	20
BspEI	TCCGGA	1 cut(s)	60
BspLI	GGNNCC	3 cut(s)	65, 179, 250
BspT107I	GGYRCC	1 cut(s)	248
BsrI	ACTGG	2 cut(s)	162, 276
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	1 cut(s)	302
BssT1I	CCWWGG	1 cut(s)	244
Bst2UI	CCWGG	1 cut(s)	109
BstC8I	GCNNGC	1 cut(s)	4
BstDEI	CTNAG	1 cut(s)	28
BstF5I	GGATG	1 cut(s)	57
BstKTI	GATC	1 cut(s)	305
BstMBI	GATC	1 cut(s)	302
BstMWI	GCNNNNNNNGC	2 cut(s)	8, 193
BstNI	CCWGG	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	107
BstSFI	CTRYAG	1 cut(s)	82
BsuRI	GGCC	1 cut(s)	196
BtsCI	GGATG	1 cut(s)	57
Cac8I	GCNNGC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	112
CviAII	CATG	1 cut(s)	282
CviJI	RGCY	5 cut(s)	11, 27, 66, 90, 196
CviKI_1	RGCY	5 cut(s)	11, 27, 66, 90, 196
CviQI	GTAC	1 cut(s)	112
DdeI	CTNAG	1 cut(s)	28
DpnI	GATC	1 cut(s)	304
DpnII	GATC	1 cut(s)	302
Eco130I	CCWWGG	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	107
EcoT14I	CCWWGG	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	244
FaeI	CATG	1 cut(s)	285
FaiI	YATR	2 cut(s)	144, 283
FatI	CATG	1 cut(s)	281
FbaI	TGATCA	1 cut(s)	302
Fnu4HI	GCNGC	1 cut(s)	263
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	263
FspBI	CTAG	2 cut(s)	12, 91
GluI	GCNGC	1 cut(s)	263
HaeIII	GGCC	1 cut(s)	196
HapII	CCGG	1 cut(s)	61
Hin1II	CATG	1 cut(s)	285
HinfI	GANTC	3 cut(s)	104, 117, 171
HpaII	CCGG	1 cut(s)	61
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	1 cut(s)	155
Hpy188III	TCNNGA	2 cut(s)	61, 74
Hpy8I	GTNNAC	1 cut(s)	155
HpyAV	CCTTC	1 cut(s)	250
HpyCH4V	TGCA	2 cut(s)	164, 187
HpyF10VI	GCNNNNNNNGC	2 cut(s)	8, 193
HpyF3I	CTNAG	1 cut(s)	28
Hsp92II	CATG	1 cut(s)	285
Kpn2I	TCCGGA	1 cut(s)	60
Ksp22I	TGATCA	1 cut(s)	302
Kzo9I	GATC	1 cut(s)	302
LmnI	GCTCC	2 cut(s)	63, 87
MaeI	CTAG	2 cut(s)	12, 91
MaeIII	GTNAC	2 cut(s)	41, 271
MalI	GATC	1 cut(s)	304
MboI	GATC	1 cut(s)	302
MnlI	CCTC	5 cut(s)	23, 28, 129, 192, 229
MroI	TCCGGA	1 cut(s)	60
MseI	TTAA	2 cut(s)	54, 69
MspI	CCGG	1 cut(s)	61
MspR9I	CCNGG	1 cut(s)	109
MvaI	CCWGG	1 cut(s)	109
MwoI	GCNNNNNNNGC	2 cut(s)	8, 193
NdeII	GATC	1 cut(s)	302
NlaIII	CATG	1 cut(s)	285
NlaIV	GGNNCC	3 cut(s)	65, 179, 250
NmuCI	GTSAC	1 cut(s)	41
PfeI	GAWTC	3 cut(s)	104, 117, 171
PflMI	CCANNNNNTGG	1 cut(s)	282
PkrI	GCNGC	1 cut(s)	264
Psp6I	CCWGG	1 cut(s)	107
PspGI	CCWGG	1 cut(s)	107
PspN4I	GGNNCC	3 cut(s)	65, 179, 250
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
SaqAI	TTAA	2 cut(s)	54, 69
SatI	GCNGC	1 cut(s)	263
Sau3AI	GATC	1 cut(s)	302
ScrFI	CCNGG	1 cut(s)	109
SfcI	CTRYAG	1 cut(s)	82
SsiI	CCGC	1 cut(s)	263
SspMI	CTAG	2 cut(s)	12, 91
StyD4I	CCNGG	1 cut(s)	107
StyI	CCWWGG	1 cut(s)	244
TaqI	TCGA	1 cut(s)	73
TauI	GCSGC	1 cut(s)	265
TfiI	GAWTC	3 cut(s)	104, 117, 171
Tru1I	TTAA	2 cut(s)	54, 69
Tru9I	TTAA	2 cut(s)	54, 69
TseFI	GTSAC	1 cut(s)	41
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	1 cut(s)	270
Van91I	CCANNNNNTGG	1 cut(s)	282
XspI	CTAG	2 cut(s)	12, 91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.