Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0031328

Physical Location & Seq

Genomic Coordinates Forward (+)

1229173 .. 1229481

Gene Structure 309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG019200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGATTATGCAGATTCCTACCGGAGCTAGGTTTGTTGGGATTCCGGGAACAGTCTCTTCTGAGAATCCAAACGGGCTTATGGTAGAAGTTTTTTGGGAGCAAGATGAATCTGGTGCACTTTGCATATCTGACCACTCACCTGAAACCCCAATACCTCCTAATATTGCAGTTAAACTAATGCCACCTTCAATTTCGCCCCAAAATTTGTTTGGCCGTCCAAAACCAGTAAACGGCATTGTGCTTGACTCCGACCAAATCACTAGTTCTTTCGGTCTAAATGGTCATAGGGGTAGTTGGCAAAGGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006869 GO:0008150 GO:0010876 GO:0015399 GO:0015405 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

102

Amino Acids

11.0

Weight (kDa)

5.11

Isoelectric Point (pI)

37.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABCA11_C	PF25158	2 - 27	7.7e-11	ABC transporter A family member 11-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031328)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004955.1_g000001
rosa_samantha	Rh7BG019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	211
AcsI	RAATTY	1 cut(s)	202
AfiI	CCNNNNNNNGG	2 cut(s)	27, 230
AgsI	TTSAA	1 cut(s)	189
AhlI	ACTAGT	1 cut(s)	260
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	1 cut(s)	58
Alw44I	GTGCAC	1 cut(s)	114
AoxI	GGCC	1 cut(s)	211
ApaLI	GTGCAC	1 cut(s)	114
ApoI	RAATTY	1 cut(s)	202
AspS9I	GGNCC	1 cut(s)	303
AsuC2I	CCSGG	1 cut(s)	45
AsuHPI	GGTGA	1 cut(s)	129
AvaII	GGWCC	1 cut(s)	303
BaeGI	GKGCMC	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	118
BceAI	ACGGC	2 cut(s)	198, 247
BcnI	CCSGG	1 cut(s)	45
BcoDI	GTCTC	1 cut(s)	58
BcuI	ACTAGT	1 cut(s)	260
BfaI	CTAG	2 cut(s)	27, 261
Bme1390I	CCNGG	1 cut(s)	45
Bme18I	GGWCC	1 cut(s)	303
BmgT120I	GGNCC	1 cut(s)	303
BmrFI	CCNGG	1 cut(s)	45
BpuMI	CCSGG	1 cut(s)	45
BsaWI	WCCGGW	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 230
Bse1I	ACTGG	1 cut(s)	224
BseLI	CCNNNNNNNGG	2 cut(s)	27, 230
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	1 cut(s)	224
BseSI	GKGCMC	1 cut(s)	118
BshFI	GGCC	1 cut(s)	213
BsiHKAI	GWGCWC	1 cut(s)	118
BsiSI	CCGG	2 cut(s)	21, 44
BslI	CCNNNNNNNGG	2 cut(s)	27, 230
BsmAI	GTCTC	1 cut(s)	58
BsnI	GGCC	1 cut(s)	213
Bsp1286I	GDGCHC	1 cut(s)	118
BspANI	GGCC	1 cut(s)	213
BspCNI	CTCAG	1 cut(s)	52
BsrI	ACTGG	1 cut(s)	224
Bst4CI	ACNGT	1 cut(s)	52
Bst6I	CTCTTC	1 cut(s)	61
BstDEI	CTNAG	1 cut(s)	60
BstMAI	GTCTC	1 cut(s)	58
BstSCI	CCNGG	1 cut(s)	43
BstSLI	GKGCMC	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	213
Cfr13I	GGNCC	1 cut(s)	303
CviJI	RGCY	3 cut(s)	26, 76, 213
CviKI_1	RGCY	3 cut(s)	26, 76, 213
DdeI	CTNAG	1 cut(s)	60
EaeI	YGGCCR	1 cut(s)	211
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	303
EcoO109I	RGGNCCY	1 cut(s)	303
FaiI	YATR	4 cut(s)	8, 80, 125, 285
FspBI	CTAG	2 cut(s)	27, 261
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	2 cut(s)	21, 44
HinfI	GANTC	5 cut(s)	13, 40, 64, 107, 245
HpaII	CCGG	2 cut(s)	21, 44
HphI	GGTGA	1 cut(s)	129
Hpy166II	GTNNAC	2 cut(s)	116, 229
Hpy188I	TCNGA	3 cut(s)	61, 130, 250
Hpy8I	GTNNAC	2 cut(s)	116, 229
HpyAV	CCTTC	1 cut(s)	195
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4V	TGCA	4 cut(s)	10, 116, 123, 167
HpyF3I	CTNAG	1 cut(s)	60
LmnI	GCTCC	2 cut(s)	23, 97
LpnPI	CCDG	5 cut(s)	34, 57, 96, 153, 237
MaeI	CTAG	2 cut(s)	27, 261
MboII	GAAGA	1 cut(s)	48
MhlI	GDGCHC	1 cut(s)	118
MluCI	AATT	2 cut(s)	189, 202
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	1 cut(s)	165
MseI	TTAA	1 cut(s)	171
MspI	CCGG	2 cut(s)	21, 44
MspR9I	CCNGG	1 cut(s)	45
NciI	CCSGG	1 cut(s)	45
PfeI	GAWTC	4 cut(s)	13, 40, 64, 107
PfoI	TCCNGGA	1 cut(s)	43
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
PpuMI	RGGWCCY	1 cut(s)	303
Psp5II	RGGWCCY	1 cut(s)	303
PspPI	GGNCC	1 cut(s)	303
PspPPI	RGGWCCY	1 cut(s)	303
SaqAI	TTAA	1 cut(s)	171
Sau96I	GGNCC	1 cut(s)	303
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	1 cut(s)	45
SduI	GDGCHC	1 cut(s)	118
SetI	ASST	6 cut(s)	28, 32, 142, 157, 187, 308
SinI	GGWCC	1 cut(s)	303
SpeI	ACTAGT	1 cut(s)	260
Sse9I	AATT	2 cut(s)	189, 202
SspI	AATATT	1 cut(s)	163
SspMI	CTAG	2 cut(s)	27, 261
StyD4I	CCNGG	1 cut(s)	43
TaaI	ACNGT	1 cut(s)	52
TaqII	GACCGA	1 cut(s)	260
TasI	AATT	2 cut(s)	189, 202
TfiI	GAWTC	4 cut(s)	13, 40, 64, 107
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TspDTI	ATGAA	1 cut(s)	120
VneI	GTGCAC	1 cut(s)	114
VpaK11BI	GGWCC	1 cut(s)	303
XapI	RAATTY	1 cut(s)	202
XcmI	CCANNNNNNNNNTGG	1 cut(s)	206
XspI	CTAG	2 cut(s)	27, 261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.