Rmu_sc0005016.1_g000056

UDP-glucose glycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005016.1
OG0023109
Physical Location & Seq
Forward (+)
224562 .. 231547
6986 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1329 bp
atggggagccgtgcgttttgtggtattatcatcttgatttgtttggttggctcggtttcggtttcggtttcagctctgaatcggaggcccaagaatgtgcaggtcgccgttcgggccaagtggtcccctactccattgctcctagaagctggtgaattgctatctagagaacagaaagatcatttttgggaattcattgacatctggcatcatactgataaggatgatcttgattcttataatgctaagggttgcctaaaaaaaattttgaaacatgggctctctattttgagtgaaccattggcttctttatttgaattctctcttacattgagatctgcatccccaagattggtgctttaccggcaattagctgaagagtctctttcatctttcccaccagttgatgaaactaattcaagaaatgccagcggaaattcagaaacaaatgaccacttggaaagtcaaaagtcagatcctttgaatgttggtctaaacccaagaagtcctaatggaaaatgttgttgggtggatactggagatgctctgttctttgatgctgtagacttaaaaagttggcttaacagtcctagagattcttctagggattcatttcagcagcctgaactcttcgaatttgaccacatccactttgattcaattgttggaagtccagttgctgttctttatggagctcttggaactgagtgctttagggagtttcatgtcaccctagttgaagctgcaaaagagggtaatgttaagtatgtggttaggcaagtattaccttctggctgcgaagcagagattgaccgttgtggtgctgttggtacaaaaaattcgttaaacttgggtggttatggagttgaacttgctttgaagaacatggaatataaggccatggatgatagtgcaataaagaaaggtgtcacgttagaagatcctcggactgaagatctcagccaagaagtcagagggtttatattctctaaaattctggagcgtaaacctgaactcacatcagagataatggcttttagggattatcttttgtcatcaacagtatctgatacacttgatgtttgggaactaaaagatttaggacatcaaactgcacagaggatagtgcatgccactgatcctctgcagtcaatgcaagaaattaatcaaaactttcccagtgttgtctcttccttatctcgcatgaagctcaatgattcagttaaagatgaaattactgcaaaccagagaatgattccacctggaaagtccttgatggctctgaatggtgctttagtcaatattgaagatattgacctttatctgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003980 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006011 GO:0006139 GO:0006457 GO:0006458 GO:0006464 GO:0006486 GO:0006487 GO:0006508 GO:0006515 GO:0006725 GO:0006793 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008194 GO:0008219 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009225 GO:0009626 GO:0009719 GO:0009725 GO:0009751 GO:0009812 GO:0009987 GO:0010033 GO:0010204 GO:0010243 GO:0010498 GO:0012501 GO:0012505 GO:0014070 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0023052 GO:0030163 GO:0030968 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0034620 GO:0034641 GO:0034645 GO:0034976 GO:0035251 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0042221 GO:0042440 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046283 GO:0046483 GO:0046527 GO:0046677 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051084 GO:0051603 GO:0051716 GO:0051788 GO:0055086 GO:0065007 GO:0070085 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0080134 GO:0097359 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901698 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Glyco_transf_8 UDP-g_GGTase

Protein Analysis

442

Amino Acids

49.17

Weight (kDa)

5.16

Isoelectric Point (pI)

39.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thioredoxin_12 PF18400 44 - 268 1.1e-49 Thioredoxin-like domain
Thioredoxin_13 PF18401 357 - 441 6.6e-27 Thioredoxin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023109)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0005016.1_g000056 Rmu_sc0005704.1_g000015 Rmu_sc0030541.1_g000001
rosa_wichuraiana Rw1G004030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 240
Acc36I ACCTGC 1 cut(s) 91
AccI GTMKAC 1 cut(s) 564
AciI CCGC 1 cut(s) 432
AclWI GGATC 3 cut(s) 470, 935, 1133
AcsI RAATTY 7 cut(s) 191, 264, 317, 436, 635, 838, 993
AcuI CTGAAG 2 cut(s) 396, 972
AfaI GTAC 1 cut(s) 832
AfiI CCNNNNNNNGG 1 cut(s) 352
AgsI TTSAA 9 cut(s) 271, 317, 420, 484, 660, 740, 869, 880, 1307
AjnI CCWGG 1 cut(s) 1261
AjuI GAANNNNNNNTTGG 2 cut(s) 508, 540
AluBI AGCT 6 cut(s) 74, 149, 374, 695, 743, 1210
AluI AGCT 6 cut(s) 74, 149, 374, 695, 743, 1210
Alw21I GWGCWC 1 cut(s) 697
Alw26I GTCTC 2 cut(s) 387, 1192
AlwI GGATC 3 cut(s) 470, 935, 1133
AlwNI CAGNNNCTG 2 cut(s) 680, 1067
AoxI GGCC 3 cut(s) 86, 114, 897
ApeKI GCWGC 3 cut(s) 619, 743, 795
ApoI RAATTY 7 cut(s) 191, 264, 317, 436, 635, 838, 993
AseI ATTAAT 1 cut(s) 1164
AspS9I GGNCC 3 cut(s) 87, 114, 123
AsuHPI GGTGA 2 cut(s) 164, 721
AsuII TTCGAA 1 cut(s) 633
AvaII GGWCC 1 cut(s) 123
BanII GRGCYC 2 cut(s) 282, 697
Bbv12I GWGCWC 1 cut(s) 697
BbvI GCAGC 3 cut(s) 631, 730, 782
BccI CCATC 1 cut(s) 1270
BceAI ACGGC 1 cut(s) 92
BciT130I CCWGG 1 cut(s) 1263
BciVI GTATCC 1 cut(s) 526
BcoDI GTCTC 2 cut(s) 387, 1192
BfaI CTAG 5 cut(s) 143, 165, 591, 603, 734
BfmI CTRYAG 2 cut(s) 561, 1145
BfuAI ACCTGC 1 cut(s) 91
BfuI GTATCC 1 cut(s) 526
BglI GCCNNNNNGGC 1 cut(s) 113
BglII AGATCT 2 cut(s) 335, 955
BisI GCNGC 3 cut(s) 620, 744, 796
BlsI GCNGC 3 cut(s) 621, 745, 797
Bme1390I CCNGG 1 cut(s) 1263
Bme18I GGWCC 1 cut(s) 123
BmgT120I GGNCC 3 cut(s) 87, 114, 123
BmiI GGNNCC 2 cut(s) 8, 125
BmrFI CCNGG 1 cut(s) 1263
BmrI ACTGGG 1 cut(s) 1173
BmsI GCATC 4 cut(s) 217, 350, 532, 547
BmuI ACTGGG 1 cut(s) 1173
BpmI CTGGAG 2 cut(s) 558, 1019
Bpu10I CCTNAGC 1 cut(s) 246
Bpu14I TTCGAA 1 cut(s) 633
BsaBI GATNNNNATC 1 cut(s) 340
BsaJI CCNNGG 2 cut(s) 900, 944
Bsc4I CCNNNNNNNGG 1 cut(s) 352
Bse118I RCCGGY 1 cut(s) 363
Bse1I ACTGG 4 cut(s) 401, 541, 674, 1179
Bse3DI GCAATG 1 cut(s) 134
Bse8I GATNNNNATC 1 cut(s) 340
BseBI CCWGG 1 cut(s) 1263
BseDI CCNNGG 2 cut(s) 900, 944
BseGI GGATG 4 cut(s) 229, 341, 645, 910
BseJI GATNNNNATC 1 cut(s) 340
BseLI CCNNNNNNNGG 1 cut(s) 352
BseMI GCAATG 1 cut(s) 134
BseMII CTCAG 2 cut(s) 696, 973
BseNI ACTGG 4 cut(s) 401, 541, 674, 1179
BseXI GCAGC 3 cut(s) 631, 730, 782
BsgI GTGCAG 2 cut(s) 119, 1098
BshFI GGCC 3 cut(s) 88, 116, 899
BsiHKAI GWGCWC 1 cut(s) 697
BsiSI CCGG 1 cut(s) 364
BslFI GGGAC 1 cut(s) 109
BslI CCNNNNNNNGG 1 cut(s) 352
BsmAI GTCTC 2 cut(s) 387, 1192
BsmFI GGGAC 1 cut(s) 109
BsnI GGCC 3 cut(s) 88, 116, 899
Bsp119I TTCGAA 1 cut(s) 633
Bsp1286I GDGCHC 2 cut(s) 282, 697
Bsp143I GATC 7 cut(s) 178, 226, 335, 475, 940, 955, 1138
Bsp19I CCATGG 1 cut(s) 900
BspACI CCGC 1 cut(s) 432
BspANI GGCC 3 cut(s) 88, 116, 899
BspCNI CTCAG 2 cut(s) 697, 972
BspLI GGNNCC 2 cut(s) 8, 125
BspMAI CTGCAG 1 cut(s) 1149
BspMI ACCTGC 1 cut(s) 91
BspPI GGATC 3 cut(s) 470, 935, 1133
BspT104I TTCGAA 1 cut(s) 633
BsrDI GCAATG 1 cut(s) 134
BsrFI RCCGGY 1 cut(s) 363
BsrI ACTGG 4 cut(s) 401, 541, 674, 1179
BssAI RCCGGY 1 cut(s) 363
BssECI CCNNGG 2 cut(s) 900, 944
BssMI GATC 7 cut(s) 178, 226, 335, 475, 940, 955, 1138
BssT1I CCWWGG 1 cut(s) 900
Bst2UI CCWGG 1 cut(s) 1263
Bst4CI ACNGT 3 cut(s) 587, 815, 1063
Bst6I CTCTTC 3 cut(s) 372, 635, 1195
BstAPI GCANNNNNTGC 1 cut(s) 1153
BstBI TTCGAA 1 cut(s) 633
BstC8I GCNNGC 2 cut(s) 430, 1131
BstDEI CTNAG 3 cut(s) 246, 705, 959
BstDSI CCRYGG 1 cut(s) 900
BstF5I GGATG 4 cut(s) 229, 341, 645, 910
BstKTI GATC 7 cut(s) 181, 229, 338, 478, 943, 958, 1141
BstMAI GTCTC 2 cut(s) 387, 1192
BstMBI GATC 7 cut(s) 178, 226, 335, 475, 940, 955, 1138
BstMWI GCNNNNNNNGC 3 cut(s) 113, 364, 1153
BstNI CCWGG 1 cut(s) 1263
BstNSI RCATGY 1 cut(s) 1133
BstSCI CCNGG 1 cut(s) 1261
BstSFI CTRYAG 2 cut(s) 561, 1145
BstV1I GCAGC 3 cut(s) 631, 730, 782
BstX2I RGATCY 4 cut(s) 335, 475, 940, 955
BstYI RGATCY 4 cut(s) 335, 475, 940, 955
BsuI GTATCC 1 cut(s) 526
BsuRI GGCC 3 cut(s) 88, 116, 899
BtgI CCRYGG 1 cut(s) 900
BtsCI GGATG 4 cut(s) 229, 341, 645, 910
BtsIMutI CAGTG 2 cut(s) 1134, 1186
BveI ACCTGC 1 cut(s) 91
Cac8I GCNNGC 2 cut(s) 430, 1131
CaiI CAGNNNCTG 2 cut(s) 680, 1067
Cfr10I RCCGGY 1 cut(s) 363
Cfr13I GGNCC 3 cut(s) 87, 114, 123
Csp6I GTAC 1 cut(s) 831
CviAII CATG 6 cut(s) 275, 725, 886, 901, 1130, 1204
CviQI GTAC 1 cut(s) 831
DdeI CTNAG 3 cut(s) 246, 705, 959
DpnI GATC 7 cut(s) 180, 228, 337, 477, 942, 957, 1140
DpnII GATC 7 cut(s) 178, 226, 335, 475, 940, 955, 1138
Eam1104I CTCTTC 3 cut(s) 372, 635, 1195
EarI CTCTTC 3 cut(s) 372, 635, 1195
Ecl136II GAGCTC 1 cut(s) 695
Eco130I CCWWGG 1 cut(s) 900
Eco24I GRGCYC 2 cut(s) 282, 697
Eco47I GGWCC 1 cut(s) 123
Eco53kI GAGCTC 1 cut(s) 695
Eco57I CTGAAG 2 cut(s) 396, 972
EcoICRI GAGCTC 1 cut(s) 695
EcoRI GAATTC 2 cut(s) 191, 317
EcoRII CCWGG 1 cut(s) 1261
EcoT14I CCWWGG 1 cut(s) 900
EcoT38I GRGCYC 2 cut(s) 282, 697
ErhI CCWWGG 1 cut(s) 900
FaeI CATG 6 cut(s) 278, 728, 889, 904, 1133, 1207
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FaqI GGGAC 1 cut(s) 109
FatI CATG 6 cut(s) 274, 724, 885, 900, 1129, 1203
FblI GTMKAC 1 cut(s) 564
Fnu4HI GCNGC 3 cut(s) 620, 744, 796
FokI GGATG 4 cut(s) 236, 328, 632, 917
FriOI GRGCYC 2 cut(s) 282, 697
Fsp4HI GCNGC 3 cut(s) 620, 744, 796
FspBI CTAG 5 cut(s) 143, 165, 591, 603, 734
GluI GCNGC 3 cut(s) 620, 744, 796
GsuI CTGGAG 2 cut(s) 558, 1019
HaeIII GGCC 3 cut(s) 88, 116, 899
HapII CCGG 1 cut(s) 364
Hin1II CATG 6 cut(s) 278, 728, 889, 904, 1133, 1207
HinfI GANTC 8 cut(s) 79, 233, 380, 596, 608, 656, 1217, 1255
HpaII CCGG 1 cut(s) 364
HphI GGTGA 2 cut(s) 164, 721
Hpy166II GTNNAC 3 cut(s) 296, 565, 1007
Hpy188I TCNGA 9 cut(s) 78, 84, 442, 475, 948, 974, 1024, 1069, 1284
Hpy188III TCNNGA 5 cut(s) 34, 165, 230, 420, 998
Hpy8I GTNNAC 3 cut(s) 296, 565, 1007
HpyAV CCTTC 1 cut(s) 798
HpyCH4III ACNGT 3 cut(s) 587, 815, 1063
HpyCH4IV ACGT 1 cut(s) 932
HpyCH4V TGCA 9 cut(s) 100, 341, 746, 914, 1115, 1129, 1147, 1156, 1241
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 364, 1153
HpyF3I CTNAG 3 cut(s) 246, 705, 959
HpySE526I ACGT 1 cut(s) 932
Hsp92II CATG 6 cut(s) 278, 728, 889, 904, 1133, 1207
Kzo9I GATC 7 cut(s) 178, 226, 335, 475, 940, 955, 1138
LmnI GCTCC 4 cut(s) 6, 144, 692, 1000
Lsp1109I GCAGC 3 cut(s) 631, 730, 782
LweI GCATC 4 cut(s) 217, 350, 532, 547
MaeI CTAG 5 cut(s) 143, 165, 591, 603, 734
MaeII ACGT 1 cut(s) 932
MaeIII GTNAC 2 cut(s) 727, 928
MalI GATC 7 cut(s) 180, 228, 337, 477, 942, 957, 1140
MboI GATC 7 cut(s) 178, 226, 335, 475, 940, 955, 1138
MboII GAAGA 8 cut(s) 389, 591, 622, 892, 950, 965, 1182, 1319
MfeI CAATTG 1 cut(s) 660
MflI RGATCY 4 cut(s) 335, 475, 940, 955
MhlI GDGCHC 2 cut(s) 282, 697
MlyI GAGTC 1 cut(s) 389
MmeI TCCRAC 1 cut(s) 646
MnlI CCTC 6 cut(s) 78, 745, 954, 968, 1113, 1152
MseI TTAA 6 cut(s) 569, 582, 762, 845, 1164, 1224
MspA1I CMGCKG 1 cut(s) 432
MspI CCGG 1 cut(s) 364
MspR9I CCNGG 1 cut(s) 1263
MunI CAATTG 1 cut(s) 660
MvaI CCWGG 1 cut(s) 1263
MwoI GCNNNNNNNGC 3 cut(s) 113, 364, 1153
NcoI CCATGG 1 cut(s) 900
NdeII GATC 7 cut(s) 178, 226, 335, 475, 940, 955, 1138
NlaIII CATG 6 cut(s) 278, 728, 889, 904, 1133, 1207
NlaIV GGNNCC 2 cut(s) 8, 125
NmuCI GTSAC 2 cut(s) 727, 928
NspI RCATGY 1 cut(s) 1133
NspV TTCGAA 1 cut(s) 633
PaeI GCATGC 1 cut(s) 1133
PfeI GAWTC 7 cut(s) 79, 233, 596, 608, 656, 1217, 1255
PkrI GCNGC 3 cut(s) 621, 745, 797
PleI GAGTC 1 cut(s) 388
PpsI GAGTC 1 cut(s) 388
PshBI ATTAAT 1 cut(s) 1164
PsiI TTATAA 1 cut(s) 240
Psp124BI GAGCTC 1 cut(s) 697
Psp6I CCWGG 1 cut(s) 1261
PspGI CCWGG 1 cut(s) 1261
PspN4I GGNNCC 2 cut(s) 8, 125
PspPI GGNCC 3 cut(s) 87, 114, 123
PstI CTGCAG 1 cut(s) 1149
PstNI CAGNNNCTG 2 cut(s) 680, 1067
PsuI RGATCY 4 cut(s) 335, 475, 940, 955
RsaI GTAC 1 cut(s) 832
RsaNI GTAC 1 cut(s) 831
SacI GAGCTC 1 cut(s) 697
SaqAI TTAA 6 cut(s) 569, 582, 762, 845, 1164, 1224
SatI GCNGC 3 cut(s) 620, 744, 796
Sau3AI GATC 7 cut(s) 178, 226, 335, 475, 940, 955, 1138
Sau96I GGNCC 3 cut(s) 87, 114, 123
SchI GAGTC 1 cut(s) 389
ScrFI CCNGG 1 cut(s) 1263
SduI GDGCHC 2 cut(s) 282, 697
SfaNI GCATC 4 cut(s) 217, 350, 532, 547
SfcI CTRYAG 2 cut(s) 561, 1145
SfuI TTCGAA 1 cut(s) 633
SinI GGWCC 1 cut(s) 123
SphI GCATGC 1 cut(s) 1133
SsiI CCGC 1 cut(s) 432
SspI AATATT 1 cut(s) 1303
SspMI CTAG 5 cut(s) 143, 165, 591, 603, 734
SstI GAGCTC 1 cut(s) 697
StyD4I CCNGG 1 cut(s) 1261
StyI CCWWGG 1 cut(s) 900
TaaI ACNGT 3 cut(s) 587, 815, 1063
TaiI ACGT 1 cut(s) 935
TaqI TCGA 1 cut(s) 633
TfiI GAWTC 7 cut(s) 79, 233, 596, 608, 656, 1217, 1255
Tru1I TTAA 6 cut(s) 569, 582, 762, 845, 1164, 1224
Tru9I TTAA 6 cut(s) 569, 582, 762, 845, 1164, 1224
TscAI CASTG 2 cut(s) 1141, 1186
TseFI GTSAC 2 cut(s) 727, 928
TseI GCWGC 3 cut(s) 619, 743, 795
Tsp45I GTSAC 2 cut(s) 727, 928
TspDTI ATGAA 7 cut(s) 184, 378, 423, 600, 713, 1220, 1245
TspRI CASTG 2 cut(s) 1141, 1186
VpaK11BI GGWCC 1 cut(s) 123
VspI ATTAAT 1 cut(s) 1164
XapI RAATTY 7 cut(s) 191, 264, 317, 436, 635, 838, 993
XbaI TCTAGA 1 cut(s) 164
XceI RCATGY 1 cut(s) 1133
XmiI GTMKAC 1 cut(s) 564
XspI CTAG 5 cut(s) 143, 165, 591, 603, 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.