Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030541.1

Orthogroup ID

OG0023109

Physical Location & Seq

Genomic Coordinates Reverse (-)

650 .. 2427

Gene Structure 1778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030541.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

atggggagccgtgcgttttgtggtattatcatcttgatttgtttggttggctcggtttcggtttcggtttcagctctgaatcggaggcccaagaatgtgcaggtcgccgttcgggccaagtggtcccctactccattgctcctagaagctggtgaattgctatctagagaacagaaagatcatttttgggaattcattgacatctggcatcatactgataaggatgatcttgattcttataatgctaagggttgcctaaaaaaaattttgaaacatgggctctctattttgagtgaaccattggcttctttatttgaattctctcttacattgagatctgcatccccaagattggtgctttaccggcaattagctgaagagtctctttcatctttcccaccagttgatgaaactaattcaagaaatgccagcggaaattcagaaacaaatgaccacttggaaagtcaaaagtcagatcctttgaatgttggtctaaacccaagaagtcctaatggaaaatgttgttgggtggatactggagatgctctgttctttgatgctgtagacttaaaaagttggcttaacagtcctagagattcttttagggattcatttcagcagcctgaactcttcgaatttgaccacatccactttgattcaattgttggaagtccagttgctgttctttatggagctcttggaactgagtgctttagggagtttcatgtcaccctagttgaagctgcaaaagaggtacaccatcttagatactttatcccctcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003980 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006011 GO:0006139 GO:0006457 GO:0006458 GO:0006464 GO:0006486 GO:0006487 GO:0006508 GO:0006515 GO:0006725 GO:0006793 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008194 GO:0008219 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009225 GO:0009626 GO:0009719 GO:0009725 GO:0009751 GO:0009812 GO:0009987 GO:0010033 GO:0010204 GO:0010243 GO:0010498 GO:0012501 GO:0012505 GO:0014070 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0023052 GO:0030163 GO:0030968 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0034620 GO:0034641 GO:0034645 GO:0034976 GO:0035251 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0042221 GO:0042440 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046283 GO:0046483 GO:0046527 GO:0046677 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051084 GO:0051603 GO:0051716 GO:0051788 GO:0055086 GO:0065007 GO:0070085 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0080134 GO:0097359 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Glyco_transf_8 UDP-g_GGTase

Protein Analysis

261

Amino Acids

29.29

Weight (kDa)

5.67

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023109)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005016.1_g000056 Rmu_sc0005704.1_g000015 Rmu_sc0030541.1_g000001
rosa_wichuraiana	Rw1G004030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	240
Acc36I	ACCTGC	1 cut(s)	91
AccI	GTMKAC	1 cut(s)	564
AciI	CCGC	1 cut(s)	432
AclWI	GGATC	1 cut(s)	470
AcsI	RAATTY	5 cut(s)	191, 264, 317, 436, 635
AcuI	CTGAAG	1 cut(s)	396
AfaI	GTAC	1 cut(s)	756
AfiI	CCNNNNNNNGG	1 cut(s)	352
AgsI	TTSAA	6 cut(s)	271, 317, 420, 484, 660, 740
AjuI	GAANNNNNNNTTGG	2 cut(s)	508, 540
AluBI	AGCT	5 cut(s)	74, 149, 374, 695, 743
AluI	AGCT	5 cut(s)	74, 149, 374, 695, 743
Alw21I	GWGCWC	1 cut(s)	697
Alw26I	GTCTC	1 cut(s)	387
AlwI	GGATC	1 cut(s)	470
AlwNI	CAGNNNCTG	1 cut(s)	680
AoxI	GGCC	2 cut(s)	86, 114
ApeKI	GCWGC	2 cut(s)	619, 743
ApoI	RAATTY	5 cut(s)	191, 264, 317, 436, 635
AspS9I	GGNCC	3 cut(s)	87, 114, 123
AsuHPI	GGTGA	2 cut(s)	164, 721
AsuII	TTCGAA	1 cut(s)	633
AvaII	GGWCC	1 cut(s)	123
BanII	GRGCYC	2 cut(s)	282, 697
Bbv12I	GWGCWC	1 cut(s)	697
BbvI	GCAGC	2 cut(s)	631, 730
BccI	CCATC	1 cut(s)	768
BceAI	ACGGC	1 cut(s)	92
BciVI	GTATCC	1 cut(s)	526
BcoDI	GTCTC	1 cut(s)	387
BfaI	CTAG	5 cut(s)	143, 165, 591, 734, 784
BfmI	CTRYAG	1 cut(s)	561
BfuAI	ACCTGC	1 cut(s)	91
BfuI	GTATCC	1 cut(s)	526
BglI	GCCNNNNNGGC	1 cut(s)	113
BglII	AGATCT	1 cut(s)	335
BisI	GCNGC	2 cut(s)	620, 744
BlsI	GCNGC	2 cut(s)	621, 745
Bme18I	GGWCC	1 cut(s)	123
BmgT120I	GGNCC	3 cut(s)	87, 114, 123
BmiI	GGNNCC	2 cut(s)	8, 125
BmsI	GCATC	4 cut(s)	217, 350, 532, 547
BpmI	CTGGAG	1 cut(s)	558
Bpu10I	CCTNAGC	1 cut(s)	246
Bpu14I	TTCGAA	1 cut(s)	633
BsaBI	GATNNNNATC	1 cut(s)	340
Bsc4I	CCNNNNNNNGG	1 cut(s)	352
Bse118I	RCCGGY	1 cut(s)	363
Bse1I	ACTGG	3 cut(s)	401, 541, 674
Bse3DI	GCAATG	1 cut(s)	134
Bse8I	GATNNNNATC	1 cut(s)	340
BseGI	GGATG	3 cut(s)	229, 341, 645
BseJI	GATNNNNATC	1 cut(s)	340
BseLI	CCNNNNNNNGG	1 cut(s)	352
BseMI	GCAATG	1 cut(s)	134
BseMII	CTCAG	1 cut(s)	696
BseNI	ACTGG	3 cut(s)	401, 541, 674
BseXI	GCAGC	2 cut(s)	631, 730
BsgI	GTGCAG	1 cut(s)	119
BshFI	GGCC	2 cut(s)	88, 116
BsiHKAI	GWGCWC	1 cut(s)	697
BsiSI	CCGG	1 cut(s)	364
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	1 cut(s)	352
BsmAI	GTCTC	1 cut(s)	387
BsmFI	GGGAC	1 cut(s)	109
BsnI	GGCC	2 cut(s)	88, 116
Bsp119I	TTCGAA	1 cut(s)	633
Bsp1286I	GDGCHC	2 cut(s)	282, 697
Bsp143I	GATC	4 cut(s)	178, 226, 335, 475
BspACI	CCGC	1 cut(s)	432
BspANI	GGCC	2 cut(s)	88, 116
BspCNI	CTCAG	1 cut(s)	697
BspLI	GGNNCC	2 cut(s)	8, 125
BspMI	ACCTGC	1 cut(s)	91
BspPI	GGATC	1 cut(s)	470
BspT104I	TTCGAA	1 cut(s)	633
BsrDI	GCAATG	1 cut(s)	134
BsrFI	RCCGGY	1 cut(s)	363
BsrI	ACTGG	3 cut(s)	401, 541, 674
BssAI	RCCGGY	1 cut(s)	363
BssMI	GATC	4 cut(s)	178, 226, 335, 475
Bst4CI	ACNGT	1 cut(s)	587
Bst6I	CTCTTC	2 cut(s)	372, 635
BstBI	TTCGAA	1 cut(s)	633
BstC8I	GCNNGC	1 cut(s)	430
BstDEI	CTNAG	3 cut(s)	246, 705, 764
BstF5I	GGATG	3 cut(s)	229, 341, 645
BstKTI	GATC	4 cut(s)	181, 229, 338, 478
BstMAI	GTCTC	1 cut(s)	387
BstMBI	GATC	4 cut(s)	178, 226, 335, 475
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 364
BstSFI	CTRYAG	1 cut(s)	561
BstV1I	GCAGC	2 cut(s)	631, 730
BstX2I	RGATCY	2 cut(s)	335, 475
BstYI	RGATCY	2 cut(s)	335, 475
BsuI	GTATCC	1 cut(s)	526
BsuRI	GGCC	2 cut(s)	88, 116
BtsCI	GGATG	3 cut(s)	229, 341, 645
BveI	ACCTGC	1 cut(s)	91
Cac8I	GCNNGC	1 cut(s)	430
CaiI	CAGNNNCTG	1 cut(s)	680
Cfr10I	RCCGGY	1 cut(s)	363
Cfr13I	GGNCC	3 cut(s)	87, 114, 123
Csp6I	GTAC	1 cut(s)	755
CviAII	CATG	2 cut(s)	275, 725
CviQI	GTAC	1 cut(s)	755
DdeI	CTNAG	3 cut(s)	246, 705, 764
DpnI	GATC	4 cut(s)	180, 228, 337, 477
DpnII	GATC	4 cut(s)	178, 226, 335, 475
Eam1104I	CTCTTC	2 cut(s)	372, 635
EarI	CTCTTC	2 cut(s)	372, 635
Ecl136II	GAGCTC	1 cut(s)	695
Eco24I	GRGCYC	2 cut(s)	282, 697
Eco47I	GGWCC	1 cut(s)	123
Eco53kI	GAGCTC	1 cut(s)	695
Eco57I	CTGAAG	1 cut(s)	396
EcoICRI	GAGCTC	1 cut(s)	695
EcoRI	GAATTC	2 cut(s)	191, 317
EcoT38I	GRGCYC	2 cut(s)	282, 697
FaeI	CATG	2 cut(s)	278, 728
FaiI	YATR	5 cut(s)	213, 240, 276, 690, 726
FalI	AAGNNNNNCTT	2 cut(s)	369, 401
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	2 cut(s)	274, 724
FblI	GTMKAC	1 cut(s)	564
Fnu4HI	GCNGC	2 cut(s)	620, 744
FokI	GGATG	3 cut(s)	236, 328, 632
FriOI	GRGCYC	2 cut(s)	282, 697
Fsp4HI	GCNGC	2 cut(s)	620, 744
FspBI	CTAG	5 cut(s)	143, 165, 591, 734, 784
GluI	GCNGC	2 cut(s)	620, 744
GsuI	CTGGAG	1 cut(s)	558
HaeIII	GGCC	2 cut(s)	88, 116
HapII	CCGG	1 cut(s)	364
Hin1II	CATG	2 cut(s)	278, 728
HinfI	GANTC	6 cut(s)	79, 233, 380, 596, 608, 656
HpaII	CCGG	1 cut(s)	364
HphI	GGTGA	2 cut(s)	164, 721
Hpy166II	GTNNAC	3 cut(s)	296, 565, 757
Hpy188I	TCNGA	4 cut(s)	78, 84, 442, 475
Hpy188III	TCNNGA	4 cut(s)	34, 165, 230, 420
Hpy8I	GTNNAC	3 cut(s)	296, 565, 757
HpyCH4III	ACNGT	1 cut(s)	587
HpyCH4V	TGCA	3 cut(s)	100, 341, 746
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 364
HpyF3I	CTNAG	3 cut(s)	246, 705, 764
Hsp92II	CATG	2 cut(s)	278, 728
Kzo9I	GATC	4 cut(s)	178, 226, 335, 475
LmnI	GCTCC	3 cut(s)	6, 144, 692
LpnPI	CCDG	9 cut(s)	86, 135, 190, 377, 414, 442, 522, 636, 687
Lsp1109I	GCAGC	2 cut(s)	631, 730
LweI	GCATC	4 cut(s)	217, 350, 532, 547
MaeI	CTAG	5 cut(s)	143, 165, 591, 734, 784
MaeIII	GTNAC	1 cut(s)	727
MalI	GATC	4 cut(s)	180, 228, 337, 477
MboI	GATC	4 cut(s)	178, 226, 335, 475
MboII	GAAGA	2 cut(s)	389, 622
MfeI	CAATTG	1 cut(s)	660
MflI	RGATCY	2 cut(s)	335, 475
MhlI	GDGCHC	2 cut(s)	282, 697
MluCI	AATT	9 cut(s)	155, 191, 264, 317, 368, 415, 436, 635, 660
MlyI	GAGTC	1 cut(s)	389
MmeI	TCCRAC	1 cut(s)	646
MnlI	CCTC	2 cut(s)	78, 745
MseI	TTAA	2 cut(s)	569, 582
MspA1I	CMGCKG	1 cut(s)	432
MspI	CCGG	1 cut(s)	364
MunI	CAATTG	1 cut(s)	660
MwoI	GCNNNNNNNGC	2 cut(s)	113, 364
NdeII	GATC	4 cut(s)	178, 226, 335, 475
NlaIII	CATG	2 cut(s)	278, 728
NlaIV	GGNNCC	2 cut(s)	8, 125
NmuCI	GTSAC	1 cut(s)	727
NspV	TTCGAA	1 cut(s)	633
PfeI	GAWTC	5 cut(s)	79, 233, 596, 608, 656
PkrI	GCNGC	2 cut(s)	621, 745
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
PsiI	TTATAA	1 cut(s)	240
Psp124BI	GAGCTC	1 cut(s)	697
PspN4I	GGNNCC	2 cut(s)	8, 125
PspPI	GGNCC	3 cut(s)	87, 114, 123
PstNI	CAGNNNCTG	1 cut(s)	680
PsuI	RGATCY	2 cut(s)	335, 475
RsaI	GTAC	1 cut(s)	756
RsaNI	GTAC	1 cut(s)	755
SacI	GAGCTC	1 cut(s)	697
SaqAI	TTAA	2 cut(s)	569, 582
SatI	GCNGC	2 cut(s)	620, 744
Sau3AI	GATC	4 cut(s)	178, 226, 335, 475
Sau96I	GGNCC	3 cut(s)	87, 114, 123
SchI	GAGTC	1 cut(s)	389
SduI	GDGCHC	2 cut(s)	282, 697
SetI	ASST	7 cut(s)	76, 105, 151, 376, 697, 745, 756
SfaNI	GCATC	4 cut(s)	217, 350, 532, 547
SfcI	CTRYAG	1 cut(s)	561
SfuI	TTCGAA	1 cut(s)	633
SinI	GGWCC	1 cut(s)	123
Sse9I	AATT	9 cut(s)	155, 191, 264, 317, 368, 415, 436, 635, 660
SsiI	CCGC	1 cut(s)	432
SspMI	CTAG	5 cut(s)	143, 165, 591, 734, 784
SstI	GAGCTC	1 cut(s)	697
TaaI	ACNGT	1 cut(s)	587
TaqI	TCGA	1 cut(s)	633
TasI	AATT	9 cut(s)	155, 191, 264, 317, 368, 415, 436, 635, 660
TfiI	GAWTC	5 cut(s)	79, 233, 596, 608, 656
Tru1I	TTAA	2 cut(s)	569, 582
Tru9I	TTAA	2 cut(s)	569, 582
TseFI	GTSAC	1 cut(s)	727
TseI	GCWGC	2 cut(s)	619, 743
Tsp45I	GTSAC	1 cut(s)	727
TspDTI	ATGAA	5 cut(s)	184, 378, 423, 600, 713
VpaK11BI	GGWCC	1 cut(s)	123
XapI	RAATTY	5 cut(s)	191, 264, 317, 436, 635
XbaI	TCTAGA	1 cut(s)	164
XmiI	GTMKAC	1 cut(s)	564
XspI	CTAG	5 cut(s)	143, 165, 591, 734, 784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.