Rmu_sc0005704.1_g000015

UDP-glucose glycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005704.1
OG0023109
Physical Location & Seq
Forward (+)
38589 .. 46499
7911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005704.1_g000015.1.cds

Sequence Viewer

Length: 1275 bp
atggggagccgtgcgttttgtggtattatcatcttgatttgtttggttggctcggtttcggtttcggtttcagctctgaatcggaggcccaagaatgtgcaggtcgccgttcgggccaagtggtcccctactccattgctcctagaagctggtgaattgctatctagagaacagaaagatcatttttgggaattcattgacatctggcatcatactgataaggatgatcttgattcttataatgctaagggttgcctaaaaaaaattttgaaacatgggctctctattttgagtgaaccattggcttctttatttgaattctctcttacattgagatctgcatccccaagattggtgctttaccggcaattagctgaagagtctctttcatctttcccaccagttgatgaaactaattcaagaaatgccagcggaaattcagaaacaaatgaccacttggaaagtcaaaagtcagatcctttgaatgttggtctaaacccaagaagtcctaatggaaaatgttgttgggtggatactggagatgctctgttctttgatgctgtagacttaaaaagttggcttaacagtcctagagattcttctagggattcatttcagcagcctgaactcttcgaatttgaccacatccactttgattcaattgttggaagtccagttgctgttctttatggagctcttggaactgagtgctttagggagtttcatgtcaccctagttgaagctgcaaaagagaacatggaatataaggccatggatgatagtgcaataaagaaaggtgtcacgttagaagatcctcggactgaagatctcagccaagaagtcagagggtttatattctctaaaattctggagcgtaaacctgaactcacatcagagataatggcttttagggattatcttttgtcatcaacagtatctgatacacttgatgtttgggaactaaaagatttaggacatcaaactgcacagaggatagtgcatgccactgatcctctgcagtcaatgcaagaaattaatcaaaactttcccagtgttgtctcttccttatctcgcatgaagctcaatgattcagttaaggatgaaattactgcaaaccagagaatgattccacctggaaagtccttgatggctctgaatggtgctttagtcaatattgaagatattgacctttatctgttggttgacttggtccatcaggatttattattggctgatcacttttcaaagttgaaggtgaatgtctttcactcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003980 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006011 GO:0006139 GO:0006457 GO:0006458 GO:0006464 GO:0006486 GO:0006487 GO:0006508 GO:0006515 GO:0006725 GO:0006793 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008194 GO:0008219 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009225 GO:0009626 GO:0009719 GO:0009725 GO:0009751 GO:0009812 GO:0009987 GO:0010033 GO:0010204 GO:0010243 GO:0010498 GO:0012501 GO:0012505 GO:0014070 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0023052 GO:0030163 GO:0030968 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0034620 GO:0034641 GO:0034645 GO:0034976 GO:0035251 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0042221 GO:0042440 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046283 GO:0046483 GO:0046527 GO:0046677 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051084 GO:0051603 GO:0051716 GO:0051788 GO:0055086 GO:0065007 GO:0070085 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0080134 GO:0097359 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901698 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Glyco_transf_8 UDP-g_GGTase

Protein Analysis

424

Amino Acids

47.58

Weight (kDa)

5.17

Isoelectric Point (pI)

39.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023109)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0005016.1_g000056 Rmu_sc0005704.1_g000015 Rmu_sc0030541.1_g000001
rosa_wichuraiana Rw1G004030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 240
Acc36I ACCTGC 1 cut(s) 91
AccI GTMKAC 1 cut(s) 564
AciI CCGC 1 cut(s) 432
AclWI GGATC 3 cut(s) 470, 806, 1004
AcsI RAATTY 6 cut(s) 191, 264, 317, 436, 635, 864
AcuI CTGAAG 2 cut(s) 396, 843
AfiI CCNNNNNNNGG 1 cut(s) 352
AgsI TTSAA 9 cut(s) 271, 317, 420, 484, 660, 740, 1178, 1245, 1252
AjnI CCWGG 1 cut(s) 1132
AjuI GAANNNNNNNTTGG 2 cut(s) 508, 540
AluBI AGCT 6 cut(s) 74, 149, 374, 695, 743, 1081
AluI AGCT 6 cut(s) 74, 149, 374, 695, 743, 1081
Alw21I GWGCWC 1 cut(s) 697
Alw26I GTCTC 2 cut(s) 387, 1063
AlwI GGATC 3 cut(s) 470, 806, 1004
AlwNI CAGNNNCTG 2 cut(s) 680, 938
AoxI GGCC 3 cut(s) 86, 114, 768
ApeKI GCWGC 2 cut(s) 619, 743
ApoI RAATTY 6 cut(s) 191, 264, 317, 436, 635, 864
AseI ATTAAT 1 cut(s) 1035
AspS9I GGNCC 4 cut(s) 87, 114, 123, 1210
AsuHPI GGTGA 3 cut(s) 164, 721, 1267
AsuII TTCGAA 1 cut(s) 633
AvaII GGWCC 2 cut(s) 123, 1210
BanII GRGCYC 2 cut(s) 282, 697
Bbv12I GWGCWC 1 cut(s) 697
BbvI GCAGC 2 cut(s) 631, 730
BccI CCATC 2 cut(s) 1141, 1221
BceAI ACGGC 1 cut(s) 92
BciT130I CCWGG 1 cut(s) 1134
BciVI GTATCC 1 cut(s) 526
BclI TGATCA 1 cut(s) 1234
BcoDI GTCTC 2 cut(s) 387, 1063
BfaI CTAG 5 cut(s) 143, 165, 591, 603, 734
BfmI CTRYAG 2 cut(s) 561, 1016
BfuAI ACCTGC 1 cut(s) 91
BfuI GTATCC 1 cut(s) 526
BglI GCCNNNNNGGC 1 cut(s) 113
BglII AGATCT 2 cut(s) 335, 826
BisI GCNGC 2 cut(s) 620, 744
BlsI GCNGC 2 cut(s) 621, 745
Bme1390I CCNGG 1 cut(s) 1134
Bme18I GGWCC 2 cut(s) 123, 1210
BmgT120I GGNCC 4 cut(s) 87, 114, 123, 1210
BmiI GGNNCC 2 cut(s) 8, 125
BmrFI CCNGG 1 cut(s) 1134
BmrI ACTGGG 1 cut(s) 1044
BmsI GCATC 4 cut(s) 217, 350, 532, 547
BmuI ACTGGG 1 cut(s) 1044
BpmI CTGGAG 2 cut(s) 558, 890
Bpu10I CCTNAGC 1 cut(s) 246
Bpu14I TTCGAA 1 cut(s) 633
BsaBI GATNNNNATC 1 cut(s) 340
BsaJI CCNNGG 2 cut(s) 771, 815
Bsc4I CCNNNNNNNGG 1 cut(s) 352
Bse118I RCCGGY 1 cut(s) 363
Bse1I ACTGG 4 cut(s) 401, 541, 674, 1050
Bse3DI GCAATG 1 cut(s) 134
Bse8I GATNNNNATC 1 cut(s) 340
BseBI CCWGG 1 cut(s) 1134
BseDI CCNNGG 2 cut(s) 771, 815
BseGI GGATG 5 cut(s) 229, 341, 645, 781, 1105
BseJI GATNNNNATC 1 cut(s) 340
BseLI CCNNNNNNNGG 1 cut(s) 352
BseMI GCAATG 1 cut(s) 134
BseMII CTCAG 2 cut(s) 696, 844
BseNI ACTGG 4 cut(s) 401, 541, 674, 1050
BseXI GCAGC 2 cut(s) 631, 730
BsgI GTGCAG 2 cut(s) 119, 969
BshFI GGCC 3 cut(s) 88, 116, 770
BsiHKAI GWGCWC 1 cut(s) 697
BsiSI CCGG 1 cut(s) 364
BslFI GGGAC 1 cut(s) 109
BslI CCNNNNNNNGG 1 cut(s) 352
BsmAI GTCTC 2 cut(s) 387, 1063
BsmFI GGGAC 1 cut(s) 109
BsnI GGCC 3 cut(s) 88, 116, 770
Bsp119I TTCGAA 1 cut(s) 633
Bsp1286I GDGCHC 2 cut(s) 282, 697
Bsp143I GATC 8 cut(s) 178, 226, 335, 475, 811, 826, 1009, 1234
Bsp19I CCATGG 1 cut(s) 771
BspACI CCGC 1 cut(s) 432
BspANI GGCC 3 cut(s) 88, 116, 770
BspCNI CTCAG 2 cut(s) 697, 843
BspLI GGNNCC 2 cut(s) 8, 125
BspMAI CTGCAG 1 cut(s) 1020
BspMI ACCTGC 1 cut(s) 91
BspPI GGATC 3 cut(s) 470, 806, 1004
BspT104I TTCGAA 1 cut(s) 633
BsrDI GCAATG 1 cut(s) 134
BsrFI RCCGGY 1 cut(s) 363
BsrI ACTGG 4 cut(s) 401, 541, 674, 1050
BssAI RCCGGY 1 cut(s) 363
BssECI CCNNGG 2 cut(s) 771, 815
BssMI GATC 8 cut(s) 178, 226, 335, 475, 811, 826, 1009, 1234
BssT1I CCWWGG 1 cut(s) 771
Bst2UI CCWGG 1 cut(s) 1134
Bst4CI ACNGT 2 cut(s) 587, 934
Bst6I CTCTTC 3 cut(s) 372, 635, 1066
BstAPI GCANNNNNTGC 1 cut(s) 1024
BstBI TTCGAA 1 cut(s) 633
BstC8I GCNNGC 2 cut(s) 430, 1002
BstDEI CTNAG 4 cut(s) 246, 705, 830, 1272
BstDSI CCRYGG 1 cut(s) 771
BstF5I GGATG 5 cut(s) 229, 341, 645, 781, 1105
BstKTI GATC 8 cut(s) 181, 229, 338, 478, 814, 829, 1012, 1237
BstMAI GTCTC 2 cut(s) 387, 1063
BstMBI GATC 8 cut(s) 178, 226, 335, 475, 811, 826, 1009, 1234
BstMWI GCNNNNNNNGC 3 cut(s) 113, 364, 1024
BstNI CCWGG 1 cut(s) 1134
BstNSI RCATGY 1 cut(s) 1004
BstSCI CCNGG 1 cut(s) 1132
BstSFI CTRYAG 2 cut(s) 561, 1016
BstV1I GCAGC 2 cut(s) 631, 730
BstX2I RGATCY 4 cut(s) 335, 475, 811, 826
BstYI RGATCY 4 cut(s) 335, 475, 811, 826
BsuI GTATCC 1 cut(s) 526
BsuRI GGCC 3 cut(s) 88, 116, 770
BtgI CCRYGG 1 cut(s) 771
BtsCI GGATG 5 cut(s) 229, 341, 645, 781, 1105
BtsIMutI CAGTG 2 cut(s) 1005, 1057
BveI ACCTGC 1 cut(s) 91
Cac8I GCNNGC 2 cut(s) 430, 1002
CaiI CAGNNNCTG 2 cut(s) 680, 938
Cfr10I RCCGGY 1 cut(s) 363
Cfr13I GGNCC 4 cut(s) 87, 114, 123, 1210
CviAII CATG 6 cut(s) 275, 725, 757, 772, 1001, 1075
DdeI CTNAG 4 cut(s) 246, 705, 830, 1272
DpnI GATC 8 cut(s) 180, 228, 337, 477, 813, 828, 1011, 1236
DpnII GATC 8 cut(s) 178, 226, 335, 475, 811, 826, 1009, 1234
Eam1104I CTCTTC 3 cut(s) 372, 635, 1066
EarI CTCTTC 3 cut(s) 372, 635, 1066
Ecl136II GAGCTC 1 cut(s) 695
Eco130I CCWWGG 1 cut(s) 771
Eco24I GRGCYC 2 cut(s) 282, 697
Eco47I GGWCC 2 cut(s) 123, 1210
Eco53kI GAGCTC 1 cut(s) 695
Eco57I CTGAAG 2 cut(s) 396, 843
EcoICRI GAGCTC 1 cut(s) 695
EcoRI GAATTC 2 cut(s) 191, 317
EcoRII CCWGG 1 cut(s) 1132
EcoT14I CCWWGG 1 cut(s) 771
EcoT38I GRGCYC 2 cut(s) 282, 697
ErhI CCWWGG 1 cut(s) 771
FaeI CATG 6 cut(s) 278, 728, 760, 775, 1004, 1078
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FaqI GGGAC 1 cut(s) 109
FatI CATG 6 cut(s) 274, 724, 756, 771, 1000, 1074
FbaI TGATCA 1 cut(s) 1234
FblI GTMKAC 1 cut(s) 564
Fnu4HI GCNGC 2 cut(s) 620, 744
FokI GGATG 5 cut(s) 236, 328, 632, 788, 1112
FriOI GRGCYC 2 cut(s) 282, 697
Fsp4HI GCNGC 2 cut(s) 620, 744
FspBI CTAG 5 cut(s) 143, 165, 591, 603, 734
GluI GCNGC 2 cut(s) 620, 744
GsuI CTGGAG 2 cut(s) 558, 890
HaeIII GGCC 3 cut(s) 88, 116, 770
HapII CCGG 1 cut(s) 364
Hin1II CATG 6 cut(s) 278, 728, 760, 775, 1004, 1078
HincII GTYRAC 1 cut(s) 1204
HindII GTYRAC 1 cut(s) 1204
HinfI GANTC 8 cut(s) 79, 233, 380, 596, 608, 656, 1088, 1126
HpaII CCGG 1 cut(s) 364
HphI GGTGA 3 cut(s) 164, 721, 1267
Hpy166II GTNNAC 4 cut(s) 296, 565, 878, 1204
Hpy188I TCNGA 9 cut(s) 78, 84, 442, 475, 819, 845, 895, 940, 1155
Hpy188III TCNNGA 6 cut(s) 34, 165, 230, 420, 869, 1217
Hpy8I GTNNAC 4 cut(s) 296, 565, 878, 1204
HpyAV CCTTC 1 cut(s) 1246
HpyCH4III ACNGT 2 cut(s) 587, 934
HpyCH4IV ACGT 1 cut(s) 803
HpyCH4V TGCA 9 cut(s) 100, 341, 746, 785, 986, 1000, 1018, 1027, 1112
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 364, 1024
HpyF3I CTNAG 4 cut(s) 246, 705, 830, 1272
HpySE526I ACGT 1 cut(s) 803
Hsp92II CATG 6 cut(s) 278, 728, 760, 775, 1004, 1078
Ksp22I TGATCA 1 cut(s) 1234
Kzo9I GATC 8 cut(s) 178, 226, 335, 475, 811, 826, 1009, 1234
LmnI GCTCC 4 cut(s) 6, 144, 692, 871
Lsp1109I GCAGC 2 cut(s) 631, 730
LweI GCATC 4 cut(s) 217, 350, 532, 547
MaeI CTAG 5 cut(s) 143, 165, 591, 603, 734
MaeII ACGT 1 cut(s) 803
MaeIII GTNAC 2 cut(s) 727, 799
MalI GATC 8 cut(s) 180, 228, 337, 477, 813, 828, 1011, 1236
MboI GATC 8 cut(s) 178, 226, 335, 475, 811, 826, 1009, 1234
MboII GAAGA 7 cut(s) 389, 591, 622, 821, 836, 1053, 1190
MfeI CAATTG 1 cut(s) 660
MflI RGATCY 4 cut(s) 335, 475, 811, 826
MhlI GDGCHC 2 cut(s) 282, 697
MlyI GAGTC 1 cut(s) 389
MmeI TCCRAC 1 cut(s) 646
MnlI CCTC 5 cut(s) 78, 825, 839, 984, 1023
MseI TTAA 4 cut(s) 569, 582, 1035, 1095
MspA1I CMGCKG 1 cut(s) 432
MspI CCGG 1 cut(s) 364
MspR9I CCNGG 1 cut(s) 1134
MunI CAATTG 1 cut(s) 660
MvaI CCWGG 1 cut(s) 1134
MwoI GCNNNNNNNGC 3 cut(s) 113, 364, 1024
NcoI CCATGG 1 cut(s) 771
NdeII GATC 8 cut(s) 178, 226, 335, 475, 811, 826, 1009, 1234
NlaIII CATG 6 cut(s) 278, 728, 760, 775, 1004, 1078
NlaIV GGNNCC 2 cut(s) 8, 125
NmuCI GTSAC 2 cut(s) 727, 799
NspI RCATGY 1 cut(s) 1004
NspV TTCGAA 1 cut(s) 633
PaeI GCATGC 1 cut(s) 1004
PfeI GAWTC 7 cut(s) 79, 233, 596, 608, 656, 1088, 1126
PflFI GACNNNGTC 1 cut(s) 1208
PkrI GCNGC 2 cut(s) 621, 745
PleI GAGTC 1 cut(s) 388
PpsI GAGTC 1 cut(s) 388
PshBI ATTAAT 1 cut(s) 1035
PsiI TTATAA 1 cut(s) 240
Psp124BI GAGCTC 1 cut(s) 697
Psp6I CCWGG 1 cut(s) 1132
PspGI CCWGG 1 cut(s) 1132
PspN4I GGNNCC 2 cut(s) 8, 125
PspPI GGNCC 4 cut(s) 87, 114, 123, 1210
PstI CTGCAG 1 cut(s) 1020
PstNI CAGNNNCTG 2 cut(s) 680, 938
PsuI RGATCY 4 cut(s) 335, 475, 811, 826
PsyI GACNNNGTC 1 cut(s) 1208
SacI GAGCTC 1 cut(s) 697
SaqAI TTAA 4 cut(s) 569, 582, 1035, 1095
SatI GCNGC 2 cut(s) 620, 744
Sau3AI GATC 8 cut(s) 178, 226, 335, 475, 811, 826, 1009, 1234
Sau96I GGNCC 4 cut(s) 87, 114, 123, 1210
SchI GAGTC 1 cut(s) 389
ScrFI CCNGG 1 cut(s) 1134
SduI GDGCHC 2 cut(s) 282, 697
SfaNI GCATC 4 cut(s) 217, 350, 532, 547
SfcI CTRYAG 2 cut(s) 561, 1016
SfuI TTCGAA 1 cut(s) 633
SinI GGWCC 2 cut(s) 123, 1210
SphI GCATGC 1 cut(s) 1004
SsiI CCGC 1 cut(s) 432
SspI AATATT 1 cut(s) 1174
SspMI CTAG 5 cut(s) 143, 165, 591, 603, 734
SstI GAGCTC 1 cut(s) 697
StyD4I CCNGG 1 cut(s) 1132
StyI CCWWGG 1 cut(s) 771
TaaI ACNGT 2 cut(s) 587, 934
TaiI ACGT 1 cut(s) 806
TaqI TCGA 1 cut(s) 633
TfiI GAWTC 7 cut(s) 79, 233, 596, 608, 656, 1088, 1126
Tru1I TTAA 4 cut(s) 569, 582, 1035, 1095
Tru9I TTAA 4 cut(s) 569, 582, 1035, 1095
TscAI CASTG 2 cut(s) 1012, 1057
TseFI GTSAC 2 cut(s) 727, 799
TseI GCWGC 2 cut(s) 619, 743
Tsp45I GTSAC 2 cut(s) 727, 799
TspDTI ATGAA 7 cut(s) 184, 378, 423, 600, 713, 1091, 1116
TspRI CASTG 2 cut(s) 1012, 1057
Tth111I GACNNNGTC 1 cut(s) 1208
VpaK11BI GGWCC 2 cut(s) 123, 1210
VspI ATTAAT 1 cut(s) 1035
XapI RAATTY 6 cut(s) 191, 264, 317, 436, 635, 864
XbaI TCTAGA 1 cut(s) 164
XceI RCATGY 1 cut(s) 1004
XmiI GTMKAC 1 cut(s) 564
XspI CTAG 5 cut(s) 143, 165, 591, 603, 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.