Rmu_sc0005026.1_g000012

Protein NRT1 PTR FAMILY 5.10-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005026.1
Physical Location & Seq
Forward (+)
41913 .. 42230
318 bp
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UTR
Exon/CDS
Intron
Rmu_sc0005026.1_g000012.1.cds

Sequence Viewer

Length: 318 bp
atgttggaaagtaagccacaaactttgacctatctcaagcctccatttttgactgatcaagaagatcatgcttatcaagaacttaagcatgaagtaagatgcacaagtggctttacttgcacattgcttgcaccagatgatttggagaaaaacaggaaggtgtgtaccatcgctgatgttgaggaagcaaaggctgttcttaggctgtttccaatatgggctacatgcttggcatatgctattgtgtatgcacagtccgctactttcttcaccaagcaaggtgctatcatggacagaactattgtgccccggttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

105

Amino Acids

11.97

Weight (kDa)

6.08

Isoelectric Point (pI)

45.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0031171)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001930.1_g000007 Rmu_sc0005026.1_g000012

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 258
AfaI GTAC 1 cut(s) 166
AflII CTTAAG 1 cut(s) 83
AsuC2I CCSGG 1 cut(s) 310
AsuHPI GGTGA 1 cut(s) 262
BaeGI GKGCMC 1 cut(s) 309
BccI CCATC 1 cut(s) 176
BclI TGATCA 1 cut(s) 55
BcnI CCSGG 1 cut(s) 310
BfrI CTTAAG 1 cut(s) 83
Bme1390I CCNGG 1 cut(s) 310
BmrFI CCNGG 1 cut(s) 310
BmsI GCATC 1 cut(s) 89
BpuEI CTTGAG 1 cut(s) 20
BpuMI CCSGG 1 cut(s) 310
BsaJI CCNNGG 1 cut(s) 308
Bse3DI GCAATG 1 cut(s) 122
BseDI CCNNGG 1 cut(s) 308
BseMI GCAATG 1 cut(s) 122
BseSI GKGCMC 1 cut(s) 309
BsiSI CCGG 1 cut(s) 310
Bsp1286I GDGCHC 1 cut(s) 309
Bsp143I GATC 2 cut(s) 55, 64
BspACI CCGC 1 cut(s) 258
BspTI CTTAAG 1 cut(s) 83
BsrDI GCAATG 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 308
BssMI GATC 2 cut(s) 55, 64
Bst4CI ACNGT 1 cut(s) 255
BstAFI CTTAAG 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 1 cut(s) 200
BstKTI GATC 2 cut(s) 58, 67
BstMBI GATC 2 cut(s) 55, 64
BstMWI GCNNNNNNNGC 3 cut(s) 108, 117, 257
BstNSI RCATGY 1 cut(s) 228
BstSCI CCNGG 1 cut(s) 308
BstSLI GKGCMC 1 cut(s) 309
BtgZI GCGATG 1 cut(s) 154
Cac8I GCNNGC 1 cut(s) 129
Csp6I GTAC 1 cut(s) 165
CspCI CAANNNNNGTGG 2 cut(s) 6, 41
CviAII CATG 4 cut(s) 68, 89, 225, 289
CviJI RGCY 6 cut(s) 16, 40, 111, 194, 205, 221
CviKI_1 RGCY 6 cut(s) 16, 40, 111, 194, 205, 221
CviQI GTAC 1 cut(s) 165
DdeI CTNAG 1 cut(s) 200
DpnI GATC 2 cut(s) 57, 66
DpnII GATC 2 cut(s) 55, 64
FaeI CATG 4 cut(s) 71, 92, 228, 292
FaiI YATR 8 cut(s) 69, 90, 217, 226, 235, 237, 249, 290
FatI CATG 4 cut(s) 67, 88, 224, 288
FauNDI CATATG 1 cut(s) 235
FbaI TGATCA 1 cut(s) 55
HapII CCGG 1 cut(s) 310
Hin1II CATG 4 cut(s) 71, 92, 228, 292
HpaII CCGG 1 cut(s) 310
HphI GGTGA 1 cut(s) 262
Hpy166II GTNNAC 1 cut(s) 165
Hpy188III TCNNGA 2 cut(s) 59, 77
Hpy8I GTNNAC 1 cut(s) 165
HpyAV CCTTC 1 cut(s) 151
HpyCH4III ACNGT 1 cut(s) 255
HpyCH4V TGCA 4 cut(s) 102, 120, 131, 251
HpyF10VI GCNNNNNNNGC 3 cut(s) 108, 117, 257
HpyF3I CTNAG 1 cut(s) 200
Hsp92II CATG 4 cut(s) 71, 92, 228, 292
Ksp22I TGATCA 1 cut(s) 55
Kzo9I GATC 2 cut(s) 55, 64
LpnPI CCDG 2 cut(s) 139, 147
LweI GCATC 1 cut(s) 89
MalI GATC 2 cut(s) 57, 66
MboI GATC 2 cut(s) 55, 64
MboII GAAGA 2 cut(s) 74, 259
MhlI GDGCHC 1 cut(s) 309
MnlI CCTC 2 cut(s) 51, 175
MseI TTAA 1 cut(s) 84
MspCI CTTAAG 1 cut(s) 83
MspI CCGG 1 cut(s) 310
MspR9I CCNGG 1 cut(s) 310
MwoI GCNNNNNNNGC 3 cut(s) 108, 117, 257
NciI CCSGG 1 cut(s) 310
NdeI CATATG 1 cut(s) 235
NdeII GATC 2 cut(s) 55, 64
NlaIII CATG 4 cut(s) 71, 92, 228, 292
NspI RCATGY 1 cut(s) 228
RsaI GTAC 1 cut(s) 166
RsaNI GTAC 1 cut(s) 165
SaqAI TTAA 1 cut(s) 84
Sau3AI GATC 2 cut(s) 55, 64
ScrFI CCNGG 1 cut(s) 310
SduI GDGCHC 1 cut(s) 309
SetI ASST 3 cut(s) 32, 162, 283
SfaNI GCATC 1 cut(s) 89
SmlI CTYRAG 2 cut(s) 35, 83
SmoI CTYRAG 2 cut(s) 35, 83
SsiI CCGC 1 cut(s) 258
StyD4I CCNGG 1 cut(s) 308
TaaI ACNGT 1 cut(s) 255
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TspDTI ATGAA 1 cut(s) 105
Vha464I CTTAAG 1 cut(s) 83
XceI RCATGY 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.