Rmu_sc0005119.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005119.1
OG0030331
Physical Location & Seq
Reverse (-)
19915 .. 20737
823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005119.1_g000003.1.cds

Sequence Viewer

Length: 282 bp
atgaacacgagaggcgagcccagcacctgcaatcgtagttttattgctactaatcgagcaatcaaaaggtggaggagatccagcctggcacgatcctctctttcctctcgccctcttcagccccctcgcatcactgagtgcctcgttagcgatgagactggaaccattgtcttcactgctcgcaatgaccaagctgacattatgaagcctggtaccactgtgatcccacgcaatgtaaagattgacatgtttgatcatggggactatgaggcatgcagttga

Protein Analysis

93

Amino Acids

10.44

Weight (kDa)

9.41

Isoelectric Point (pI)

63.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0030331)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0246581
rosa_multiflora Rmu_sc0005119.1_g000003

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 35
Acc36I ACCTGC 1 cut(s) 35
Acc65I GGTACC 1 cut(s) 212
AccB1I GGYRCC 1 cut(s) 212
AclWI GGATC 3 cut(s) 72, 87, 217
AcuI CTGAAG 1 cut(s) 101
AdeI CACNNNGTG 1 cut(s) 138
AfaI GTAC 1 cut(s) 214
AflIII ACRYGT 1 cut(s) 246
AjnI CCWGG 2 cut(s) 84, 208
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
Alw26I GTCTC 1 cut(s) 149
AlwI GGATC 3 cut(s) 72, 87, 217
AlwNI CAGNNNCTG 1 cut(s) 27
Asp718I GGTACC 1 cut(s) 212
BaeI ACNNNNGTAYC 2 cut(s) 204, 237
BanI GGYRCC 1 cut(s) 212
BanII GRGCYC 1 cut(s) 21
BauI CACGAG 1 cut(s) 7
BbsI GAAGAC 1 cut(s) 163
BciT130I CCWGG 2 cut(s) 86, 210
BclI TGATCA 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 149
BfuAI ACCTGC 1 cut(s) 35
Bme1390I CCNGG 2 cut(s) 86, 210
BmiI GGNNCC 2 cut(s) 163, 214
BmrFI CCNGG 2 cut(s) 86, 210
BmsI GCATC 1 cut(s) 138
BpiI GAAGAC 1 cut(s) 163
Bse1I ACTGG 1 cut(s) 163
Bse3DI GCAATG 2 cut(s) 190, 238
BseBI CCWGG 2 cut(s) 86, 210
BseMI GCAATG 2 cut(s) 190, 238
BseMII CTCAG 1 cut(s) 126
BseNI ACTGG 1 cut(s) 163
BseRI GAGGAG 1 cut(s) 88
BseYI CCCAGC 1 cut(s) 20
BshNI GGYRCC 1 cut(s) 212
BslFI GGGAC 1 cut(s) 275
BsmAI GTCTC 1 cut(s) 149
BsmFI GGGAC 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 4 cut(s) 77, 92, 222, 253
BspCNI CTCAG 1 cut(s) 127
BspLI GGNNCC 2 cut(s) 163, 214
BspMI ACCTGC 1 cut(s) 35
BspPI GGATC 3 cut(s) 72, 87, 217
BspT107I GGYRCC 1 cut(s) 212
BsrDI GCAATG 2 cut(s) 190, 238
BsrI ACTGG 1 cut(s) 163
BssMI GATC 4 cut(s) 77, 92, 222, 253
BssSI CACGAG 1 cut(s) 7
Bst2BI CACGAG 1 cut(s) 7
Bst2UI CCWGG 2 cut(s) 86, 210
Bst4CI ACNGT 1 cut(s) 220
Bst6I CTCTTC 1 cut(s) 120
BstC8I GCNNGC 3 cut(s) 17, 181, 274
BstDEI CTNAG 1 cut(s) 135
BstKTI GATC 4 cut(s) 80, 95, 225, 256
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 4 cut(s) 77, 92, 222, 253
BstMWI GCNNNNNNNGC 2 cut(s) 21, 147
BstNI CCWGG 2 cut(s) 86, 210
BstNSI RCATGY 2 cut(s) 250, 276
BstSCI CCNGG 2 cut(s) 84, 208
BstV2I GAAGAC 1 cut(s) 163
BstX2I RGATCY 1 cut(s) 77
BstYI RGATCY 1 cut(s) 77
BtgZI GCGATG 1 cut(s) 165
BtsI GCAGTG 1 cut(s) 174
BtsIMutI CAGTG 3 cut(s) 132, 174, 216
BveI ACCTGC 1 cut(s) 35
Cac8I GCNNGC 3 cut(s) 17, 181, 274
CaiI CAGNNNCTG 1 cut(s) 27
Csp6I GTAC 1 cut(s) 213
CviAII CATG 3 cut(s) 247, 257, 273
CviJI RGCY 5 cut(s) 19, 84, 121, 194, 208
CviKI_1 RGCY 5 cut(s) 19, 84, 121, 194, 208
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 1 cut(s) 135
DpnI GATC 4 cut(s) 79, 94, 224, 255
DpnII GATC 4 cut(s) 77, 92, 222, 253
DraIII CACNNNGTG 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco24I GRGCYC 1 cut(s) 21
Eco57I CTGAAG 1 cut(s) 101
EcoRII CCWGG 2 cut(s) 84, 208
EcoT38I GRGCYC 1 cut(s) 21
FaeI CATG 3 cut(s) 250, 260, 276
FaiI YATR 5 cut(s) 203, 248, 258, 267, 274
FaqI GGGAC 1 cut(s) 275
FatI CATG 3 cut(s) 246, 256, 272
FbaI TGATCA 1 cut(s) 253
FriOI GRGCYC 1 cut(s) 21
GsaI CCCAGC 1 cut(s) 24
Hin1II CATG 3 cut(s) 250, 260, 276
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4V TGCA 2 cut(s) 30, 276
HpyF10VI GCNNNNNNNGC 2 cut(s) 21, 147
HpyF3I CTNAG 1 cut(s) 135
Hsp92II CATG 3 cut(s) 250, 260, 276
KpnI GGTACC 1 cut(s) 216
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 4 cut(s) 77, 92, 222, 253
LpnPI CCDG 8 cut(s) 34, 40, 71, 94, 98, 144, 195, 222
LweI GCATC 1 cut(s) 138
MalI GATC 4 cut(s) 79, 94, 224, 255
MboI GATC 4 cut(s) 77, 92, 222, 253
MboII GAAGA 2 cut(s) 107, 163
MflI RGATCY 1 cut(s) 77
MhlI GDGCHC 1 cut(s) 21
MnlI CCTC 8 cut(s) 5, 66, 106, 115, 123, 135, 152, 262
MspR9I CCNGG 2 cut(s) 86, 210
MvaI CCWGG 2 cut(s) 86, 210
MwoI GCNNNNNNNGC 2 cut(s) 21, 147
NdeII GATC 4 cut(s) 77, 92, 222, 253
NlaIII CATG 3 cut(s) 250, 260, 276
NlaIV GGNNCC 2 cut(s) 163, 214
NspI RCATGY 2 cut(s) 250, 276
PaeI GCATGC 1 cut(s) 276
PaqCI CACCTGC 1 cut(s) 35
PciI ACATGT 1 cut(s) 246
PscI ACATGT 1 cut(s) 246
Psp6I CCWGG 2 cut(s) 84, 208
PspFI CCCAGC 1 cut(s) 20
PspGI CCWGG 2 cut(s) 84, 208
PspN4I GGNNCC 2 cut(s) 163, 214
PstNI CAGNNNCTG 1 cut(s) 27
PsuI RGATCY 1 cut(s) 77
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
Sau3AI GATC 4 cut(s) 77, 92, 222, 253
ScrFI CCNGG 2 cut(s) 86, 210
SduI GDGCHC 1 cut(s) 21
SetI ASST 3 cut(s) 29, 71, 196
SfaNI GCATC 1 cut(s) 138
SphI GCATGC 1 cut(s) 276
StyD4I CCNGG 2 cut(s) 84, 208
TaaI ACNGT 1 cut(s) 220
TaqI TCGA 1 cut(s) 55
TscAI CASTG 3 cut(s) 139, 181, 223
TspDTI ATGAA 2 cut(s) 17, 218
TspRI CASTG 3 cut(s) 139, 181, 223
XceI RCATGY 2 cut(s) 250, 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.