Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005152.1

Orthogroup ID

OG0025592

Physical Location & Seq

Genomic Coordinates Forward (+)

37049 .. 37862

Gene Structure 814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atggacccagaagctgaggactgccagccaagattacggagacaactagaagatgttgattatgtttcagtagaatttgaagacaaaaagctcagctggcaagatgttgcagtttacaggcccccagaagatgctctgtttgcacatccgaggctctttagggcttgtgttccaccaggtatgcatcggtttagaggaaatatatgggattatgagagcagaccacaagtcatgcgagcattgggatatcccttaaagatgacagatagaattccagacattactgaggcaaggaacatcgaacttggacttgggctacaggtgatcccttgctacactccatctctatacatatattttcccaaagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0022613 GO:0030422 GO:0031047 GO:0031050 GO:0031053 GO:0031054 GO:0032296 GO:0034470 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_3

Protein Analysis

123

Amino Acids

14.47

Weight (kDa)

5.19

Isoelectric Point (pI)

57.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025592)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005152.1_g000010
rosa_roxburghii	Rroxscaffold_5G00387160
rosa_samantha	Rh1DG144200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	319
AcsI	RAATTY	2 cut(s)	74, 270
AgsI	TTSAA	1 cut(s)	80
AhdI	GACNNNNNGTC	1 cut(s)	227
AjnI	CCWGG	1 cut(s)	175
AjuI	GAANNNNNNNTTGG	2 cut(s)	294, 326
AluBI	AGCT	3 cut(s)	14, 91, 96
AluI	AGCT	3 cut(s)	14, 91, 96
Alw26I	GTCTC	1 cut(s)	34
AlwI	GGATC	1 cut(s)	319
AlwNI	CAGNNNCTG	1 cut(s)	14
AoxI	GGCC	1 cut(s)	119
ApoI	RAATTY	2 cut(s)	74, 270
AspS9I	GGNCC	2 cut(s)	4, 120
AsuHPI	GGTGA	1 cut(s)	334
AvaII	GGWCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	87
BbvCI	CCTCAGC	1 cut(s)	15
BccI	CCATC	1 cut(s)	349
BciT130I	CCWGG	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	34
BfaI	CTAG	1 cut(s)	47
BfmI	CTRYAG	1 cut(s)	317
BlpI	GCTNAGC	1 cut(s)	92
Bme1390I	CCNGG	1 cut(s)	177
Bme18I	GGWCC	1 cut(s)	4
BmeRI	GACNNNNNGTC	1 cut(s)	227
BmgT120I	GGNCC	2 cut(s)	4, 120
BmiI	GGNNCC	2 cut(s)	6, 122
BmrFI	CCNGG	1 cut(s)	177
BmsI	GCATC	2 cut(s)	121, 193
BpiI	GAAGAC	1 cut(s)	87
Bpu10I	CCTNAGC	1 cut(s)	15
Bpu1102I	GCTNAGC	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	149
BseBI	CCWGG	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	149
BseGI	GGATG	1 cut(s)	145
BseMII	CTCAG	3 cut(s)	6, 106, 276
BshFI	GGCC	1 cut(s)	121
BsmAI	GTCTC	1 cut(s)	34
BsnI	GGCC	1 cut(s)	121
Bsp143I	GATC	1 cut(s)	324
Bsp1720I	GCTNAGC	1 cut(s)	92
BspANI	GGCC	1 cut(s)	121
BspCNI	CTCAG	3 cut(s)	7, 105, 277
BspLI	GGNNCC	2 cut(s)	6, 122
BspPI	GGATC	1 cut(s)	319
BssECI	CCNNGG	1 cut(s)	149
BssMI	GATC	1 cut(s)	324
Bst2UI	CCWGG	1 cut(s)	177
BstC8I	GCNNGC	3 cut(s)	26, 98, 237
BstDEI	CTNAG	3 cut(s)	15, 92, 285
BstF5I	GGATG	1 cut(s)	145
BstKTI	GATC	1 cut(s)	327
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	324
BstMWI	GCNNNNNNNGC	2 cut(s)	97, 140
BstNI	CCWGG	1 cut(s)	177
BstSCI	CCNGG	1 cut(s)	175
BstSFI	CTRYAG	1 cut(s)	317
BstV2I	GAAGAC	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	145
Cac8I	GCNNGC	3 cut(s)	26, 98, 237
CaiI	CAGNNNCTG	1 cut(s)	14
Cfr13I	GGNCC	2 cut(s)	4, 120
CsiI	ACCWGGT	1 cut(s)	175
CviAII	CATG	1 cut(s)	232
CviJI	RGCY	8 cut(s)	14, 28, 91, 96, 121, 154, 164, 316
CviKI_1	RGCY	8 cut(s)	14, 28, 91, 96, 121, 154, 164, 316
DdeI	CTNAG	3 cut(s)	15, 92, 285
DpnI	GATC	1 cut(s)	326
DpnII	GATC	1 cut(s)	324
DriI	GACNNNNNGTC	1 cut(s)	227
Eam1105I	GACNNNNNGTC	1 cut(s)	227
Eco32I	GATATC	1 cut(s)	248
Eco47I	GGWCC	1 cut(s)	4
EcoO109I	RGGNCCY	1 cut(s)	120
EcoRI	GAATTC	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	175
EcoRV	GATATC	1 cut(s)	248
EcoT22I	ATGCAT	1 cut(s)	186
FaeI	CATG	1 cut(s)	235
FaiI	YATR	9 cut(s)	63, 182, 203, 205, 213, 233, 349, 353, 355
FatI	CATG	1 cut(s)	231
FokI	GGATG	1 cut(s)	132
FspBI	CTAG	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	121
Hin1II	CATG	1 cut(s)	235
HphI	GGTGA	1 cut(s)	334
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	1 cut(s)	150
Hpy188III	TCNNGA	1 cut(s)	275
Hpy8I	GTNNAC	1 cut(s)	115
HpyCH4V	TGCA	3 cut(s)	110, 143, 184
HpyF10VI	GCNNNNNNNGC	2 cut(s)	97, 140
HpyF3I	CTNAG	3 cut(s)	15, 92, 285
Hsp92II	CATG	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	324
LpnPI	CCDG	9 cut(s)	21, 38, 82, 103, 138, 162, 189, 288, 305
LweI	GCATC	2 cut(s)	121, 193
MabI	ACCWGGT	1 cut(s)	175
MaeI	CTAG	1 cut(s)	47
MalI	GATC	1 cut(s)	326
MboI	GATC	1 cut(s)	324
MboII	GAAGA	3 cut(s)	62, 92, 140
MluCI	AATT	2 cut(s)	74, 270
MnlI	CCTC	4 cut(s)	10, 144, 188, 280
Mph1103I	ATGCAT	1 cut(s)	186
MseI	TTAA	1 cut(s)	254
MspA1I	CMGCKG	1 cut(s)	96
MspR9I	CCNGG	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	177
MwoI	GCNNNNNNNGC	2 cut(s)	97, 140
NdeII	GATC	1 cut(s)	324
NlaIII	CATG	1 cut(s)	235
NlaIV	GGNNCC	2 cut(s)	6, 122
NsiI	ATGCAT	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	175
PspN4I	GGNNCC	2 cut(s)	6, 122
PspPI	GGNCC	2 cut(s)	4, 120
PstNI	CAGNNNCTG	1 cut(s)	14
PvuII	CAGCTG	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	254
Sau3AI	GATC	1 cut(s)	324
Sau96I	GGNCC	2 cut(s)	4, 120
ScrFI	CCNGG	1 cut(s)	177
SetI	ASST	5 cut(s)	16, 93, 98, 181, 324
SexAI	ACCWGGT	1 cut(s)	175
SfaNI	GCATC	2 cut(s)	121, 193
SfcI	CTRYAG	1 cut(s)	317
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	2 cut(s)	74, 270
SspMI	CTAG	1 cut(s)	47
StyD4I	CCNGG	1 cut(s)	175
TaqI	TCGA	1 cut(s)	300
TasI	AATT	2 cut(s)	74, 270
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TspGWI	ACGGA	1 cut(s)	52
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	2 cut(s)	74, 270
XspI	CTAG	1 cut(s)	47
Zsp2I	ATGCAT	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.