Ribonuclease III family
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_multiflora | Rmu_sc0005152.1_g000010 |
| rosa_roxburghii | Rroxscaffold_5G00387160 |
| rosa_samantha | Rh1DG144200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 2 cut(s) | 113, 309 |
| AgsI | TTSAA | 2 cut(s) | 29, 119 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 266 |
| AjnI | CCWGG | 1 cut(s) | 214 |
| AluBI | AGCT | 3 cut(s) | 53, 130, 135 |
| AluI | AGCT | 3 cut(s) | 53, 130, 135 |
| Alw26I | GTCTC | 1 cut(s) | 73 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 53 |
| ApoI | RAATTY | 2 cut(s) | 113, 309 |
| AspS9I | GGNCC | 1 cut(s) | 43 |
| AvaII | GGWCC | 1 cut(s) | 43 |
| BbsI | GAAGAC | 1 cut(s) | 126 |
| BbvCI | CCTCAGC | 1 cut(s) | 54 |
| BciT130I | CCWGG | 1 cut(s) | 216 |
| BcoDI | GTCTC | 1 cut(s) | 73 |
| BfaI | CTAG | 1 cut(s) | 86 |
| BlpI | GCTNAGC | 1 cut(s) | 131 |
| Bme1390I | CCNGG | 1 cut(s) | 216 |
| Bme18I | GGWCC | 1 cut(s) | 43 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 266 |
| BmgT120I | GGNCC | 1 cut(s) | 43 |
| BmiI | GGNNCC | 1 cut(s) | 45 |
| BmrFI | CCNGG | 1 cut(s) | 216 |
| BmsI | GCATC | 2 cut(s) | 160, 232 |
| BpiI | GAAGAC | 1 cut(s) | 126 |
| Bpu10I | CCTNAGC | 1 cut(s) | 54 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 131 |
| BsaJI | CCNNGG | 1 cut(s) | 188 |
| BseBI | CCWGG | 1 cut(s) | 216 |
| BseDI | CCNNGG | 1 cut(s) | 188 |
| BseGI | GGATG | 1 cut(s) | 184 |
| BseMII | CTCAG | 2 cut(s) | 45, 145 |
| BsmAI | GTCTC | 1 cut(s) | 73 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 131 |
| BspCNI | CTCAG | 2 cut(s) | 46, 144 |
| BspLI | GGNNCC | 1 cut(s) | 45 |
| BssECI | CCNNGG | 1 cut(s) | 188 |
| Bst2UI | CCWGG | 1 cut(s) | 216 |
| BstC8I | GCNNGC | 3 cut(s) | 65, 137, 276 |
| BstDEI | CTNAG | 3 cut(s) | 54, 131, 348 |
| BstF5I | GGATG | 1 cut(s) | 184 |
| BstMAI | GTCTC | 1 cut(s) | 73 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 136, 179 |
| BstNI | CCWGG | 1 cut(s) | 216 |
| BstSCI | CCNGG | 1 cut(s) | 214 |
| BstV2I | GAAGAC | 1 cut(s) | 126 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 75 |
| BtsCI | GGATG | 1 cut(s) | 184 |
| Cac8I | GCNNGC | 3 cut(s) | 65, 137, 276 |
| CaiI | CAGNNNCTG | 1 cut(s) | 53 |
| Cfr13I | GGNCC | 1 cut(s) | 43 |
| CsiI | ACCWGGT | 1 cut(s) | 214 |
| CviAII | CATG | 1 cut(s) | 271 |
| CviJI | RGCY | 6 cut(s) | 53, 67, 130, 135, 193, 203 |
| CviKI_1 | RGCY | 6 cut(s) | 53, 67, 130, 135, 193, 203 |
| DdeI | CTNAG | 3 cut(s) | 54, 131, 348 |
| DriI | GACNNNNNGTC | 1 cut(s) | 266 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 266 |
| Eco32I | GATATC | 1 cut(s) | 287 |
| Eco47I | GGWCC | 1 cut(s) | 43 |
| EcoRI | GAATTC | 1 cut(s) | 309 |
| EcoRII | CCWGG | 1 cut(s) | 214 |
| EcoRV | GATATC | 1 cut(s) | 287 |
| EcoT22I | ATGCAT | 1 cut(s) | 225 |
| FaeI | CATG | 1 cut(s) | 274 |
| FaiI | YATR | 7 cut(s) | 76, 102, 221, 242, 244, 252, 272 |
| FatI | CATG | 1 cut(s) | 270 |
| FokI | GGATG | 1 cut(s) | 171 |
| FspBI | CTAG | 1 cut(s) | 86 |
| Hin1II | CATG | 1 cut(s) | 274 |
| HinfI | GANTC | 1 cut(s) | 159 |
| Hpy166II | GTNNAC | 1 cut(s) | 154 |
| Hpy188I | TCNGA | 2 cut(s) | 164, 189 |
| Hpy188III | TCNNGA | 1 cut(s) | 314 |
| Hpy8I | GTNNAC | 1 cut(s) | 154 |
| HpyCH4V | TGCA | 3 cut(s) | 149, 182, 223 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 136, 179 |
| HpyF3I | CTNAG | 3 cut(s) | 54, 131, 348 |
| Hsp92II | CATG | 1 cut(s) | 274 |
| LpnPI | CCDG | 8 cut(s) | 18, 60, 77, 121, 201, 228, 309, 327 |
| LweI | GCATC | 2 cut(s) | 160, 232 |
| MabI | ACCWGGT | 1 cut(s) | 214 |
| MaeI | CTAG | 1 cut(s) | 86 |
| MboII | GAAGA | 3 cut(s) | 101, 131, 179 |
| MluCI | AATT | 2 cut(s) | 113, 309 |
| MlyI | GAGTC | 1 cut(s) | 153 |
| MnlI | CCTC | 3 cut(s) | 49, 183, 227 |
| Mph1103I | ATGCAT | 1 cut(s) | 225 |
| MseI | TTAA | 1 cut(s) | 293 |
| MspA1I | CMGCKG | 1 cut(s) | 135 |
| MspR9I | CCNGG | 1 cut(s) | 216 |
| MvaI | CCWGG | 1 cut(s) | 216 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 136, 179 |
| NlaIII | CATG | 1 cut(s) | 274 |
| NlaIV | GGNNCC | 1 cut(s) | 45 |
| NsiI | ATGCAT | 1 cut(s) | 225 |
| PleI | GAGTC | 1 cut(s) | 153 |
| PpsI | GAGTC | 1 cut(s) | 153 |
| Psp6I | CCWGG | 1 cut(s) | 214 |
| PspGI | CCWGG | 1 cut(s) | 214 |
| PspN4I | GGNNCC | 1 cut(s) | 45 |
| PspPI | GGNCC | 1 cut(s) | 43 |
| PstNI | CAGNNNCTG | 1 cut(s) | 53 |
| PvuII | CAGCTG | 1 cut(s) | 135 |
| SaqAI | TTAA | 1 cut(s) | 293 |
| Sau96I | GGNCC | 1 cut(s) | 43 |
| SchI | GAGTC | 1 cut(s) | 153 |
| ScrFI | CCNGG | 1 cut(s) | 216 |
| SetI | ASST | 4 cut(s) | 55, 132, 137, 220 |
| SexAI | ACCWGGT | 1 cut(s) | 214 |
| SfaNI | GCATC | 2 cut(s) | 160, 232 |
| SinI | GGWCC | 1 cut(s) | 43 |
| Sse9I | AATT | 2 cut(s) | 113, 309 |
| SspMI | CTAG | 1 cut(s) | 86 |
| StyD4I | CCNGG | 1 cut(s) | 214 |
| TaqI | TCGA | 1 cut(s) | 337 |
| TasI | AATT | 2 cut(s) | 113, 309 |
| Tru1I | TTAA | 1 cut(s) | 293 |
| Tru9I | TTAA | 1 cut(s) | 293 |
| VpaK11BI | GGWCC | 1 cut(s) | 43 |
| XapI | RAATTY | 2 cut(s) | 113, 309 |
| XspI | CTAG | 1 cut(s) | 86 |
| Zsp2I | ATGCAT | 1 cut(s) | 225 |