Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0025592

Physical Location & Seq

Genomic Coordinates Forward (+)

30389520 .. 30391318

Gene Structure 1799 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG144200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGCCAGAAGTATATCACGTTCTTTTTGAAGTATTTGGAATGGACCCAGAAGCTGAGGACTGCCAGCCAAGATTAGGGAGACAACTAGAAGATGTTGATTATGTTTCAGTAGAATTTGAAGACAAAAAGCTCAGCTGGCAAGATGTTGCAGTTTACAGACCCCCAGAAGATGCTCTGTTTGCACATCCGAGGCTCTTTAGGGCTTGTGTTCTACCAGGTATGCATCGGTTTAGGGGAAATAAATGGGATTATGAGAGCAGACCACAAGTCATGCGAGCATTGGGATATCCCTTAAAGATGACAGATAGAATTCCAGACATTACTGAGGCAAGGAACATCAAACTTGGACTTGGGCTACAGCTTGCTTTCTTGCATCCATCAAAGCACAAATTTGAGCACCCTTGTTTCTGTTATGAGCGATTAGAATATGTTGGCCAAAAAATCCAGGTTCAACCATCAGAAACTGATGATCAGAGTGTCCATGTGGAGCAAGCTGAAAATGTTCAAAGTGATGTGCAAGTTGAAAGTGATATGCATTCTGGATCAGTGCAGCAAACTGCAAATGTACCAACACCCTCAATTGTTGCAAGTGCTTTATCTCAACCGATGATCTCATCACCACCTCTACCTCAGTCTTCTTCGCAGCCCACTGTTATCGGATCATCTCATACATCCAATACATTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003727 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0022613 GO:0030422 GO:0031047 GO:0031050 GO:0031053 GO:0031054 GO:0032296 GO:0034470 GO:0034641 GO:0034660 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_3

Protein Analysis

229

Amino Acids

25.92

Weight (kDa)

5.22

Isoelectric Point (pI)

54.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025592)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005152.1_g000010
rosa_roxburghii	Rroxscaffold_5G00387160
rosa_samantha	Rh1DG144200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	550, 667
AcoI	YGGCCR	1 cut(s)	433
AcsI	RAATTY	3 cut(s)	113, 309, 389
AfaI	GTAC	1 cut(s)	567
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	5 cut(s)	29, 119, 452, 506, 524
AhdI	GACNNNNNGTC	1 cut(s)	266
AjnI	CCWGG	2 cut(s)	214, 444
AluBI	AGCT	5 cut(s)	53, 130, 135, 361, 494
AluI	AGCT	5 cut(s)	53, 130, 135, 361, 494
Alw21I	GWGCWC	1 cut(s)	399
Alw26I	GTCTC	1 cut(s)	73
AlwI	GGATC	2 cut(s)	550, 667
AlwNI	CAGNNNCTG	2 cut(s)	53, 464
AoxI	GGCC	1 cut(s)	433
ApeKI	GCWGC	2 cut(s)	550, 643
ApoI	RAATTY	3 cut(s)	113, 309, 389
Asp700I	GAANNNNTTC	1 cut(s)	501
AspS9I	GGNCC	1 cut(s)	43
AsuHPI	GGTGA	1 cut(s)	609
AvaII	GGWCC	1 cut(s)	43
BalI	TGGCCA	1 cut(s)	435
BbsI	GAAGAC	2 cut(s)	126, 627
Bbv12I	GWGCWC	1 cut(s)	399
BbvCI	CCTCAGC	1 cut(s)	54
BbvI	GCAGC	2 cut(s)	562, 655
BccI	CCATC	2 cut(s)	385, 463
BciT130I	CCWGG	2 cut(s)	216, 446
BclI	TGATCA	1 cut(s)	469
BcoDI	GTCTC	1 cut(s)	73
BfaI	CTAG	1 cut(s)	86
BfmI	CTRYAG	1 cut(s)	356
BisI	GCNGC	2 cut(s)	551, 644
BlpI	GCTNAGC	1 cut(s)	131
BlsI	GCNGC	2 cut(s)	552, 645
Bme1390I	CCNGG	2 cut(s)	216, 446
Bme18I	GGWCC	1 cut(s)	43
BmeRI	GACNNNNNGTC	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	43
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	2 cut(s)	216, 446
BmsI	GCATC	3 cut(s)	160, 232, 382
BpiI	GAAGAC	2 cut(s)	126, 627
Bpu10I	CCTNAGC	1 cut(s)	54
Bpu1102I	GCTNAGC	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
BseBI	CCWGG	2 cut(s)	216, 446
BseDI	CCNNGG	1 cut(s)	188
BseGI	GGATG	3 cut(s)	184, 373, 671
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMII	CTCAG	4 cut(s)	45, 145, 315, 644
BseXI	GCAGC	2 cut(s)	562, 655
BsgI	GTGCAG	1 cut(s)	569
BshFI	GGCC	1 cut(s)	435
BsiHKAI	GWGCWC	1 cut(s)	399
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	73
BsmI	GAATGC	1 cut(s)	535
BsnI	GGCC	1 cut(s)	435
Bsp1286I	GDGCHC	1 cut(s)	399
Bsp143I	GATC	4 cut(s)	469, 542, 609, 659
Bsp1720I	GCTNAGC	1 cut(s)	131
BspANI	GGCC	1 cut(s)	435
BspCNI	CTCAG	4 cut(s)	46, 144, 316, 643
BspLI	GGNNCC	1 cut(s)	45
BspPI	GGATC	2 cut(s)	550, 667
BssECI	CCNNGG	1 cut(s)	188
BssMI	GATC	4 cut(s)	469, 542, 609, 659
Bst2UI	CCWGG	2 cut(s)	216, 446
Bst4CI	ACNGT	1 cut(s)	652
BstC8I	GCNNGC	5 cut(s)	65, 137, 276, 363, 492
BstDEI	CTNAG	4 cut(s)	54, 131, 324, 630
BstF5I	GGATG	3 cut(s)	184, 373, 671
BstKTI	GATC	4 cut(s)	472, 545, 612, 662
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	4 cut(s)	469, 542, 609, 659
BstMWI	GCNNNNNNNGC	2 cut(s)	136, 179
BstNI	CCWGG	2 cut(s)	216, 446
BstSCI	CCNGG	2 cut(s)	214, 444
BstSFI	CTRYAG	1 cut(s)	356
BstV1I	GCAGC	2 cut(s)	562, 655
BstV2I	GAAGAC	2 cut(s)	126, 627
BsuRI	GGCC	1 cut(s)	435
BtsCI	GGATG	3 cut(s)	184, 373, 671
BtsIMutI	CAGTG	2 cut(s)	552, 648
Cac8I	GCNNGC	5 cut(s)	65, 137, 276, 363, 492
CaiI	CAGNNNCTG	2 cut(s)	53, 464
Cfr13I	GGNCC	1 cut(s)	43
CsiI	ACCWGGT	1 cut(s)	214
Csp6I	GTAC	1 cut(s)	566
CviAII	CATG	2 cut(s)	271, 482
CviQI	GTAC	1 cut(s)	566
DdeI	CTNAG	4 cut(s)	54, 131, 324, 630
DpnI	GATC	4 cut(s)	471, 544, 611, 661
DpnII	GATC	4 cut(s)	469, 542, 609, 659
DriI	GACNNNNNGTC	1 cut(s)	266
EaeI	YGGCCR	1 cut(s)	433
Eam1105I	GACNNNNNGTC	1 cut(s)	266
Eco32I	GATATC	1 cut(s)	287
Eco47I	GGWCC	1 cut(s)	43
EcoRI	GAATTC	1 cut(s)	309
EcoRII	CCWGG	2 cut(s)	214, 444
EcoRV	GATATC	1 cut(s)	287
EcoT22I	ATGCAT	2 cut(s)	225, 537
FaeI	CATG	2 cut(s)	274, 485
FatI	CATG	2 cut(s)	270, 481
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	2 cut(s)	551, 644
FokI	GGATG	3 cut(s)	171, 360, 658
Fsp4HI	GCNGC	2 cut(s)	551, 644
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	2 cut(s)	551, 644
HaeIII	GGCC	1 cut(s)	435
Hin1II	CATG	2 cut(s)	274, 485
HphI	GGTGA	1 cut(s)	609
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	4 cut(s)	189, 460, 474, 659
Hpy188III	TCNNGA	2 cut(s)	314, 540
Hpy8I	GTNNAC	1 cut(s)	154
HpyCH4III	ACNGT	1 cut(s)	652
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	9 cut(s)	149, 182, 223, 373, 517, 535, 550, 560, 587
HpyF10VI	GCNNNNNNNGC	2 cut(s)	136, 179
HpyF3I	CTNAG	4 cut(s)	54, 131, 324, 630
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	2 cut(s)	274, 485
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	4 cut(s)	469, 542, 609, 659
LmnI	GCTCC	1 cut(s)	487
Lsp1109I	GCAGC	2 cut(s)	562, 655
LweI	GCATC	3 cut(s)	160, 232, 382
MabI	ACCWGGT	1 cut(s)	214
MaeI	CTAG	1 cut(s)	86
MaeII	ACGT	1 cut(s)	18
MalI	GATC	4 cut(s)	471, 544, 611, 661
MboI	GATC	4 cut(s)	469, 542, 609, 659
MboII	GAAGA	5 cut(s)	101, 131, 179, 627, 630
MfeI	CAATTG	1 cut(s)	579
MhlI	GDGCHC	1 cut(s)	399
MlsI	TGGCCA	1 cut(s)	435
MluCI	AATT	4 cut(s)	113, 309, 389, 579
MluNI	TGGCCA	1 cut(s)	435
MnlI	CCTC	6 cut(s)	49, 183, 319, 586, 633, 639
Mox20I	TGGCCA	1 cut(s)	435
Mph1103I	ATGCAT	2 cut(s)	225, 537
MroXI	GAANNNNTTC	1 cut(s)	501
MscI	TGGCCA	1 cut(s)	435
MseI	TTAA	1 cut(s)	293
MslI	CAYNNNNRTG	1 cut(s)	685
Msp20I	TGGCCA	1 cut(s)	435
MspA1I	CMGCKG	1 cut(s)	135
MspR9I	CCNGG	2 cut(s)	216, 446
MunI	CAATTG	1 cut(s)	579
Mva1269I	GAATGC	1 cut(s)	535
MvaI	CCWGG	2 cut(s)	216, 446
MwoI	GCNNNNNNNGC	2 cut(s)	136, 179
NdeII	GATC	4 cut(s)	469, 542, 609, 659
NlaIII	CATG	2 cut(s)	274, 485
NlaIV	GGNNCC	1 cut(s)	45
NsiI	ATGCAT	2 cut(s)	225, 537
PctI	GAATGC	1 cut(s)	535
PdmI	GAANNNNTTC	1 cut(s)	501
PkrI	GCNGC	2 cut(s)	552, 645
Psp6I	CCWGG	2 cut(s)	214, 444
PspGI	CCWGG	2 cut(s)	214, 444
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	1 cut(s)	43
PsrI	GAACNNNNNNTAC	1 cut(s)	35
PstNI	CAGNNNCTG	2 cut(s)	53, 464
PvuII	CAGCTG	1 cut(s)	135
RsaI	GTAC	1 cut(s)	567
RsaNI	GTAC	1 cut(s)	566
RseI	CAYNNNNRTG	1 cut(s)	685
SaqAI	TTAA	1 cut(s)	293
SatI	GCNGC	2 cut(s)	551, 644
Sau3AI	GATC	4 cut(s)	469, 542, 609, 659
Sau96I	GGNCC	1 cut(s)	43
ScrFI	CCNGG	2 cut(s)	216, 446
SduI	GDGCHC	1 cut(s)	399
SexAI	ACCWGGT	1 cut(s)	214
SfaNI	GCATC	3 cut(s)	160, 232, 382
SfcI	CTRYAG	1 cut(s)	356
SinI	GGWCC	1 cut(s)	43
SmiMI	CAYNNNNRTG	1 cut(s)	685
Sse9I	AATT	4 cut(s)	113, 309, 389, 579
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	2 cut(s)	214, 444
TaaI	ACNGT	1 cut(s)	652
TaiI	ACGT	1 cut(s)	21
TasI	AATT	4 cut(s)	113, 309, 389, 579
Tru1I	TTAA	1 cut(s)	293
Tru9I	TTAA	1 cut(s)	293
TscAI	CASTG	2 cut(s)	552, 655
TseI	GCWGC	2 cut(s)	550, 643
TspRI	CASTG	2 cut(s)	552, 655
VpaK11BI	GGWCC	1 cut(s)	43
XapI	RAATTY	3 cut(s)	113, 309, 389
XmnI	GAANNNNTTC	1 cut(s)	501
XspI	CTAG	1 cut(s)	86
Zsp2I	ATGCAT	2 cut(s)	225, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.