Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005233.1

Orthogroup ID

OG0012307

Physical Location & Seq

Genomic Coordinates Reverse (-)

22198 .. 27242

Gene Structure 5045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005233.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

atggcacggttagctgcacgagcaaatgtgaagtcactcttcaatggtgagggagtcccatcatcaggatccgggttggacccaaaagacccattgagctgcatgttcactttctcatcatcgatcaaaccccgaaaccgcaggctcagctcatttgactccactaggctttactcctcctccaactcttcttccaacaagaccaagcgtctcaaggccgaggttcgtttgttttttggggatgaggaggatgttaagggtgacaacaaggttggtgagcatgcccatcatggtggtgatgatgatgatgatgagtttgagagggatgagctgtcctgtttcagaggtctggttttggatatctcatacaggctcagctcatttgactccactaggctttactcctcctccaactcttcttccaacaagaccaagcgtctcaaggccgaggttcgtttgtttttcggggatgaggaggatgttaagggtgacaacaaggttggtgagcatgcccatcatggtggtgatgatgatgatgatgatgagtttgagagggatgagctgtcctgtttcagaggtctggttttggatatctcatacaggccaattaatgtggtctgctggaaacgtgctatttgtttggaattcatggataaggcggatgtcctagaatactatgatcagactgttaattccccaagtggatccttctacataccggctgttttaaggattccccatttactgcaagttgtaaagagaagaagaattaagtgcaatcttagtcgtaaaaatatactttgtcgggactgtttcacttgtcagtactgttcttcacgtgaaaacttgaccattgaccatgttataccaattgcacgaggtggagaatggaagtgggaaaatctggttactgcatgtgcaaaatgcaactcgaagaaagggcagaagacattggaggaagcatgtatgaagctgatgaaaattcccaagactccaaaagactatgacatacttgccatacccctaacgagtgcggcagtaaagatgctgaaaatgagaaagggaactccagaagagtggctccaatatctatcgaagccttcttcaatgccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HNH_5

Protein Analysis

371

Amino Acids

42.02

Weight (kDa)

7.88

Isoelectric Point (pI)

48.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23840
fragaria_vesca	FvH4_3g25250 FvH4_3g25250
malus_domestica	MD12G1002500.v1.1
prunus_persica	Prupe.7G002400_v2.0.a1 Prupe.7G002400_v2.0.a1 Prupe.7G002400_v2.0.a1 Prupe.7G002400_v2.0.a1
pyrus_communis	pycom12g00220
rosa_chinensis	RchiOBHm_Chr5g0046891
rosa_laevigata	RLG00000034453
rosa_multiflora	Rmu_sc0005233.1_g000003
rosa_roxburghii	Rroxscaffold_1G00034500
rosa_rugosa	Rorug05G0232400
rosa_samantha	Rh5AG311900 Rh5BG320900 Rh5CG347100 Rh5DG331600
rosa_wichuraiana	Rw5G029150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	139, 659, 1034
AclWI	GGATC	4 cut(s)	63, 76, 699, 712
AcsI	RAATTY	2 cut(s)	644, 981
AcvI	CACGTG	1 cut(s)	839
AdeI	CACNNNGTG	1 cut(s)	881
AfaI	GTAC	1 cut(s)	827
AfiI	CCNNNNNNNGG	1 cut(s)	65
AgsI	TTSAA	2 cut(s)	43, 1107
AhdI	GACNNNNNGTC	2 cut(s)	207, 435
AluBI	AGCT	7 cut(s)	14, 99, 150, 331, 378, 562, 973
AluI	AGCT	7 cut(s)	14, 99, 150, 331, 378, 562, 973
Alw26I	GTCTC	2 cut(s)	215, 443
AlwI	GGATC	4 cut(s)	63, 76, 699, 712
AoxI	GGCC	3 cut(s)	216, 444, 602
ApeKI	GCWGC	2 cut(s)	14, 99
ApoI	RAATTY	2 cut(s)	644, 981
ArsI	GACNNNNNNTTYG	2 cut(s)	17, 49
AseI	ATTAAT	1 cut(s)	609
AspS9I	GGNCC	1 cut(s)	79
AsuC2I	CCSGG	1 cut(s)	73
AsuHPI	GGTGA	7 cut(s)	59, 272, 287, 308, 500, 515, 536
AvaII	GGWCC	1 cut(s)	79
BamHI	GGATCC	2 cut(s)	68, 704
BauI	CACGAG	2 cut(s)	18, 876
BbrPI	CACGTG	1 cut(s)	839
BbsI	GAAGAC	1 cut(s)	953
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	3 cut(s)	67, 294, 522
BclI	TGATCA	1 cut(s)	679
BcnI	CCSGG	1 cut(s)	73
BcoDI	GTCTC	2 cut(s)	215, 443
BfaI	CTAG	3 cut(s)	165, 393, 668
BisI	GCNGC	3 cut(s)	15, 100, 1035
BlpI	GCTNAGC	2 cut(s)	146, 374
BlsI	GCNGC	3 cut(s)	16, 101, 1036
BmcAI	AGTACT	1 cut(s)	827
Bme1390I	CCNGG	1 cut(s)	73
Bme18I	GGWCC	1 cut(s)	79
BmeRI	GACNNNNNGTC	2 cut(s)	207, 435
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	4 cut(s)	70, 81, 706, 1082
BmrFI	CCNGG	1 cut(s)	73
BmsI	GCATC	1 cut(s)	1035
BpiI	GAAGAC	1 cut(s)	953
BpmI	CTGGAG	1 cut(s)	1053
Bpu1102I	GCTNAGC	2 cut(s)	146, 374
BpuEI	CTTGAG	2 cut(s)	197, 425
BpuMI	CCSGG	1 cut(s)	73
Bsa29I	ATCGAT	1 cut(s)	122
BsaAI	YACGTR	1 cut(s)	839
BsaJI	CCNNGG	2 cut(s)	219, 447
BsaXI	ACNNNNNCTCC	4 cut(s)	164, 194, 392, 422
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse118I	RCCGGY	1 cut(s)	718
BseCI	ATCGAT	1 cut(s)	122
BseDI	CCNNGG	2 cut(s)	219, 447
BseGI	GGATG	7 cut(s)	247, 256, 331, 475, 484, 562, 667
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseMII	CTCAG	2 cut(s)	160, 388
BseRI	GAGGAG	6 cut(s)	166, 169, 260, 394, 397, 488
BseXI	GCAGC	1 cut(s)	86
BshFI	GGCC	3 cut(s)	218, 446, 604
BshVI	ATCGAT	1 cut(s)	122
BsiSI	CCGG	2 cut(s)	72, 719
BslFI	GGGAC	2 cut(s)	41, 821
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmAI	GTCTC	2 cut(s)	215, 443
BsmBI	CGTCTC	2 cut(s)	215, 443
BsmFI	GGGAC	2 cut(s)	41, 821
BsnI	GGCC	3 cut(s)	218, 446, 604
Bsp143I	GATC	4 cut(s)	68, 123, 679, 704
Bsp1720I	GCTNAGC	2 cut(s)	146, 374
BspACI	CCGC	3 cut(s)	139, 659, 1034
BspANI	GGCC	3 cut(s)	218, 446, 604
BspCNI	CTCAG	2 cut(s)	159, 387
BspDI	ATCGAT	1 cut(s)	122
BspLI	GGNNCC	4 cut(s)	70, 81, 706, 1082
BspPI	GGATC	4 cut(s)	63, 76, 699, 712
BsrFI	RCCGGY	1 cut(s)	718
BssAI	RCCGGY	1 cut(s)	718
BssECI	CCNNGG	2 cut(s)	219, 447
BssMI	GATC	4 cut(s)	68, 123, 679, 704
BssSI	CACGAG	2 cut(s)	18, 876
Bst2BI	CACGAG	2 cut(s)	18, 876
Bst4CI	ACNGT	4 cut(s)	9, 688, 812, 830
Bst6I	CTCTTC	4 cut(s)	44, 193, 421, 1068
BstBAI	YACGTR	1 cut(s)	839
BstC8I	GCNNGC	3 cut(s)	143, 282, 510
BstDEI	CTNAG	3 cut(s)	146, 374, 782
BstF5I	GGATG	7 cut(s)	247, 256, 331, 475, 484, 562, 667
BstKTI	GATC	4 cut(s)	71, 126, 682, 707
BstMAI	GTCTC	2 cut(s)	215, 443
BstMBI	GATC	4 cut(s)	68, 123, 679, 704
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 20, 147
BstNSI	RCATGY	5 cut(s)	106, 284, 512, 918, 966
BstSCI	CCNGG	1 cut(s)	71
BstV1I	GCAGC	1 cut(s)	86
BstV2I	GAAGAC	1 cut(s)	953
BstX2I	RGATCY	2 cut(s)	68, 704
BstXI	CCANNNNNNTGG	3 cut(s)	293, 521, 1077
BstYI	RGATCY	2 cut(s)	68, 704
Bsu15I	ATCGAT	1 cut(s)	122
BsuRI	GGCC	3 cut(s)	218, 446, 604
BsuTUI	ATCGAT	1 cut(s)	122
BtsCI	GGATG	7 cut(s)	247, 256, 331, 475, 484, 562, 667
Cac8I	GCNNGC	3 cut(s)	143, 282, 510
Cfr10I	RCCGGY	1 cut(s)	718
Cfr13I	GGNCC	1 cut(s)	79
ClaI	ATCGAT	1 cut(s)	122
CseI	GACGC	2 cut(s)	197, 425
Csp6I	GTAC	1 cut(s)	826
CspCI	CAANNNNNGTGG	2 cut(s)	594, 629
CviQI	GTAC	1 cut(s)	826
DdeI	CTNAG	3 cut(s)	146, 374, 782
DpnI	GATC	4 cut(s)	70, 125, 681, 706
DpnII	GATC	4 cut(s)	68, 123, 679, 704
DraIII	CACNNNGTG	1 cut(s)	881
DriI	GACNNNNNGTC	2 cut(s)	207, 435
Eam1104I	CTCTTC	4 cut(s)	44, 193, 421, 1068
Eam1105I	GACNNNNNGTC	2 cut(s)	207, 435
EarI	CTCTTC	4 cut(s)	44, 193, 421, 1068
EciI	GGCGGA	1 cut(s)	674
Eco32I	GATATC	2 cut(s)	361, 592
Eco47I	GGWCC	1 cut(s)	79
Eco72I	CACGTG	1 cut(s)	839
EcoRI	GAATTC	1 cut(s)	644
EcoRV	GATATC	2 cut(s)	361, 592
Esp3I	CGTCTC	2 cut(s)	215, 443
FalI	AAGNNNNNCTT	2 cut(s)	23, 55
FaqI	GGGAC	2 cut(s)	41, 821
FbaI	TGATCA	1 cut(s)	679
Fnu4HI	GCNGC	3 cut(s)	15, 100, 1035
FokI	GGATG	7 cut(s)	254, 263, 338, 482, 491, 569, 674
Fsp4HI	GCNGC	3 cut(s)	15, 100, 1035
FspBI	CTAG	3 cut(s)	165, 393, 668
GluI	GCNGC	3 cut(s)	15, 100, 1035
GsuI	CTGGAG	1 cut(s)	1053
HaeIII	GGCC	3 cut(s)	218, 446, 604
HapII	CCGG	2 cut(s)	72, 719
HgaI	GACGC	2 cut(s)	197, 425
HinfI	GANTC	5 cut(s)	54, 158, 386, 733, 991
HpaII	CCGG	2 cut(s)	72, 719
HphI	GGTGA	7 cut(s)	59, 272, 287, 308, 500, 515, 536
Hpy166II	GTNNAC	1 cut(s)	108
Hpy188I	TCNGA	3 cut(s)	344, 575, 684
Hpy188III	TCNNGA	3 cut(s)	66, 806, 1070
Hpy8I	GTNNAC	1 cut(s)	108
HpyAV	CCTTC	2 cut(s)	718, 1110
HpyCH4III	ACNGT	4 cut(s)	9, 688, 812, 830
HpyCH4IV	ACGT	2 cut(s)	628, 838
HpyCH4V	TGCA	8 cut(s)	17, 102, 748, 777, 875, 914, 920, 927
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 20, 147
HpyF3I	CTNAG	3 cut(s)	146, 374, 782
HpySE526I	ACGT	2 cut(s)	628, 838
Ksp22I	TGATCA	1 cut(s)	679
Kzo9I	GATC	4 cut(s)	68, 123, 679, 704
LmnI	GCTCC	1 cut(s)	1086
Lsp1109I	GCAGC	1 cut(s)	86
LweI	GCATC	1 cut(s)	1035
MaeI	CTAG	3 cut(s)	165, 393, 668
MaeII	ACGT	2 cut(s)	628, 838
MaeIII	GTNAC	4 cut(s)	33, 260, 488, 907
MalI	GATC	4 cut(s)	70, 125, 681, 706
MboI	GATC	4 cut(s)	68, 123, 679, 704
MfeI	CAATTG	1 cut(s)	870
MflI	RGATCY	2 cut(s)	68, 704
MluCI	AATT	6 cut(s)	606, 644, 691, 768, 870, 981
MlyI	GAGTC	4 cut(s)	63, 152, 380, 985
MmeI	TCCRAC	5 cut(s)	57, 207, 219, 435, 447
MseI	TTAA	6 cut(s)	255, 483, 609, 690, 728, 771
MslI	CAYNNNNRTG	4 cut(s)	291, 294, 519, 522
MspI	CCGG	2 cut(s)	72, 719
MspR9I	CCNGG	1 cut(s)	73
MunI	CAATTG	1 cut(s)	870
MwoI	GCNNNNNNNGC	3 cut(s)	11, 20, 147
NciI	CCSGG	1 cut(s)	73
NdeII	GATC	4 cut(s)	68, 123, 679, 704
NlaIV	GGNNCC	4 cut(s)	70, 81, 706, 1082
NmeAIII	GCCGAG	2 cut(s)	244, 472
NmuCI	GTSAC	3 cut(s)	33, 260, 488
NspI	RCATGY	5 cut(s)	106, 284, 512, 918, 966
PaeI	GCATGC	2 cut(s)	284, 512
PfeI	GAWTC	1 cut(s)	733
PkrI	GCNGC	3 cut(s)	16, 101, 1036
PleI	GAGTC	4 cut(s)	62, 152, 380, 985
PmaCI	CACGTG	1 cut(s)	839
PmlI	CACGTG	1 cut(s)	839
PpsI	GAGTC	4 cut(s)	62, 152, 380, 985
Ppu21I	YACGTR	1 cut(s)	839
PshBI	ATTAAT	1 cut(s)	609
PspCI	CACGTG	1 cut(s)	839
PspN4I	GGNNCC	4 cut(s)	70, 81, 706, 1082
PspPI	GGNCC	1 cut(s)	79
PsuI	RGATCY	2 cut(s)	68, 704
RsaI	GTAC	1 cut(s)	827
RsaNI	GTAC	1 cut(s)	826
RseI	CAYNNNNRTG	4 cut(s)	291, 294, 519, 522
SaqAI	TTAA	6 cut(s)	255, 483, 609, 690, 728, 771
SatI	GCNGC	3 cut(s)	15, 100, 1035
Sau3AI	GATC	4 cut(s)	68, 123, 679, 704
Sau96I	GGNCC	1 cut(s)	79
ScaI	AGTACT	1 cut(s)	827
SchI	GAGTC	4 cut(s)	63, 152, 380, 985
ScrFI	CCNGG	1 cut(s)	73
SfaNI	GCATC	1 cut(s)	1035
SinI	GGWCC	1 cut(s)	79
SmiMI	CAYNNNNRTG	4 cut(s)	291, 294, 519, 522
SmlI	CTYRAG	2 cut(s)	212, 440
SmoI	CTYRAG	2 cut(s)	212, 440
SphI	GCATGC	2 cut(s)	284, 512
Sse9I	AATT	6 cut(s)	606, 644, 691, 768, 870, 981
SsiI	CCGC	3 cut(s)	139, 659, 1034
SspMI	CTAG	3 cut(s)	165, 393, 668
StyD4I	CCNGG	1 cut(s)	71
TaaI	ACNGT	4 cut(s)	9, 688, 812, 830
TaiI	ACGT	2 cut(s)	631, 841
TaqI	TCGA	3 cut(s)	122, 932, 1094
TasI	AATT	6 cut(s)	606, 644, 691, 768, 870, 981
TatI	WGTACW	1 cut(s)	825
TauI	GCSGC	1 cut(s)	1037
TfiI	GAWTC	1 cut(s)	733
Tru1I	TTAA	6 cut(s)	255, 483, 609, 690, 728, 771
Tru9I	TTAA	6 cut(s)	255, 483, 609, 690, 728, 771
TseFI	GTSAC	3 cut(s)	33, 260, 488
TseI	GCWGC	2 cut(s)	14, 99
Tsp45I	GTSAC	3 cut(s)	33, 260, 488
TspDTI	ATGAA	3 cut(s)	637, 983, 992
VpaK11BI	GGWCC	1 cut(s)	79
VspI	ATTAAT	1 cut(s)	609
XapI	RAATTY	2 cut(s)	644, 981
XceI	RCATGY	5 cut(s)	106, 284, 512, 918, 966
XspI	CTAG	3 cut(s)	165, 393, 668
ZrmI	AGTACT	1 cut(s)	827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.