Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005237.1

Orthogroup ID

OG0022678

Physical Location & Seq

Genomic Coordinates Reverse (-)

856 .. 1933

Gene Structure 1078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

atggcaatggcaacctcacctcactccctccttctccaaaacccaactcgcactttcctcaaaaaccccaaactacctttcaccgccgttcccatgacctccacccgaatctcccccaccaccatcgcaaaacccatctcgatcaaatgcgctgccaccacgaccccaatccaagatctctgcccgaacccgcccgagtcccaagatcgggtcttcaaattcgccgccggccccgccaatctccaggaggacgtcctcaagaaggcccaatcggagctttacaactggcgcaaatctggcatgagcgtcatggaaatgagccactgcggcaaggaattctcctccataatccagaaggccgagtccgacctccgaaccctcttgaatattccccaagaatattccgtcctcttcctccaaggtggtgccaccacccagttcgttgcgatcccactcaatctgtgcaagcctgatgataaagtggaatacttggtcaccgagtcgtggggcgacaaggccttcaaggaggcccagaagtacagcaaggccaaggtgatctgctgcgctgaaaaaaacccaccagcaactccgaagcttccaagcttcgattctctctccaaagttgatgatctgaaaagaaaacaccatataatccttcacctcaccgagtggaagctaccgctattagtctcaccaacagtcgtggtcgaagtcgaaaaatccaaccggaaaccgccatgcacagtcgaaaccgaccagctcgccgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000287 GO:0003006 GO:0003674 GO:0003824 GO:0004647 GO:0004648 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006563 GO:0006564 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009555 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0016053 GO:0016311 GO:0016740 GO:0016769 GO:0016787 GO:0016788 GO:0016791 GO:0019752 GO:0022414 GO:0022622 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0042221 GO:0042578 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046686 GO:0046872 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00680 ko00750 ko01100 ko01120 ko01130 ko01200 ko01230 ko03018 map00260 map00680 map00750 map01100 map01120 map01130 map01200 map01230 map03018

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

256

Amino Acids

28.45

Weight (kDa)

8.87

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_5	PF00266	72 - 185	2.1e-13	Aminotransferase class-V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022678)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0097541
rosa_multiflora	Rmu_co8147652.1_g000001 Rmu_sc0005237.1_g000001
rosa_rugosa	Rorug05G0127100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	255
AccB1I	GGYRCC	1 cut(s)	425
AciI	CCGC	7 cut(s)	84, 191, 225, 234, 327, 680, 734
AclWI	GGATC	1 cut(s)	442
AcsI	RAATTY	2 cut(s)	218, 335
AcyI	GRCGYC	1 cut(s)	252
AdeI	CACNNNGTG	1 cut(s)	669
AfaI	GTAC	1 cut(s)	539
AfiI	CCNNNNNNNGG	4 cut(s)	207, 208, 262, 504
AgsI	TTSAA	3 cut(s)	217, 385, 523
AjnI	CCWGG	1 cut(s)	243
AjuI	GAANNNNNNNTTGG	4 cut(s)	62, 94, 592, 624
AluBI	AGCT	5 cut(s)	277, 595, 603, 676, 760
AluI	AGCT	5 cut(s)	277, 595, 603, 676, 760
Alw26I	GTCTC	1 cut(s)	694
AlwI	GGATC	1 cut(s)	442
Ama87I	CYCGRG	1 cut(s)	194
AoxI	GGCC	6 cut(s)	229, 264, 357, 516, 528, 546
ApeKI	GCWGC	2 cut(s)	152, 561
ApoI	RAATTY	2 cut(s)	218, 335
AspLEI	GCGC	3 cut(s)	152, 291, 566
AspS9I	GGNCC	3 cut(s)	230, 265, 529
AsuHPI	GGTGA	7 cut(s)	9, 73, 487, 565, 650, 655, 684
AvaI	CYCGRG	1 cut(s)	194
BanI	GGYRCC	1 cut(s)	425
BbsI	GAAGAC	1 cut(s)	205
BbvI	GCAGC	2 cut(s)	139, 548
BccI	CCATC	2 cut(s)	131, 143
BceAI	ACGGC	2 cut(s)	71, 749
BciT130I	CCWGG	1 cut(s)	245
BcoDI	GTCTC	1 cut(s)	694
BglI	GCCNNNNNGGC	1 cut(s)	327
BglII	AGATCT	1 cut(s)	175
BisI	GCNGC	4 cut(s)	153, 225, 328, 562
BlsI	GCNGC	4 cut(s)	154, 226, 329, 563
Bme1390I	CCNGG	1 cut(s)	245
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	3 cut(s)	230, 265, 529
BmiI	GGNNCC	2 cut(s)	232, 427
BmrFI	CCNGG	1 cut(s)	245
BmrI	ACTGGG	1 cut(s)	430
BmuI	ACTGGG	1 cut(s)	430
BpiI	GAAGAC	1 cut(s)	205
BpmI	CTGGAG	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	242
BsaHI	GRCGYC	1 cut(s)	252
BsaJI	CCNNGG	2 cut(s)	418, 549
BsaWI	WCCGGW	1 cut(s)	726
Bsc4I	CCNNNNNNNGG	4 cut(s)	207, 208, 262, 504
Bse118I	RCCGGY	1 cut(s)	227
Bse1I	ACTGG	2 cut(s)	290, 436
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	2 cut(s)	418, 549
BseLI	CCNNNNNNNGG	4 cut(s)	207, 208, 262, 504
BseMI	GCAATG	1 cut(s)	12
BseNI	ACTGG	2 cut(s)	290, 436
BseRI	GAGGAG	1 cut(s)	331
BseXI	GCAGC	2 cut(s)	139, 548
BshFI	GGCC	6 cut(s)	231, 266, 359, 518, 530, 548
BshNI	GGYRCC	1 cut(s)	425
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	2 cut(s)	228, 727
BslFI	GGGAC	1 cut(s)	184
BslI	CCNNNNNNNGG	4 cut(s)	207, 208, 262, 504
BsmAI	GTCTC	1 cut(s)	694
BsmFI	GGGAC	1 cut(s)	184
BsnI	GGCC	6 cut(s)	231, 266, 359, 518, 530, 548
BsoBI	CYCGRG	1 cut(s)	194
Bsp143I	GATC	6 cut(s)	141, 175, 205, 447, 555, 628
BspACI	CCGC	7 cut(s)	84, 191, 225, 234, 327, 680, 734
BspANI	GGCC	6 cut(s)	231, 266, 359, 518, 530, 548
BspLI	GGNNCC	2 cut(s)	232, 427
BspPI	GGATC	1 cut(s)	442
BspT107I	GGYRCC	1 cut(s)	425
BsrDI	GCAATG	1 cut(s)	12
BsrFI	RCCGGY	1 cut(s)	227
BsrI	ACTGG	2 cut(s)	290, 436
BssAI	RCCGGY	1 cut(s)	227
BssECI	CCNNGG	2 cut(s)	418, 549
BssMI	GATC	6 cut(s)	141, 175, 205, 447, 555, 628
BssNI	GRCGYC	1 cut(s)	252
BssT1I	CCWWGG	2 cut(s)	418, 549
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	2 cut(s)	700, 745
Bst6I	CTCTTC	1 cut(s)	416
BstACI	GRCGYC	1 cut(s)	252
BstC8I	GCNNGC	3 cut(s)	229, 467, 762
BstEII	GGTNACC	1 cut(s)	493
BstENI	CCTNNNNNAGG	1 cut(s)	260
BstHHI	GCGC	3 cut(s)	152, 291, 566
BstKTI	GATC	6 cut(s)	144, 178, 208, 450, 558, 631
BstMAI	GTCTC	1 cut(s)	694
BstMBI	GATC	6 cut(s)	141, 175, 205, 447, 555, 628
BstMWI	GCNNNNNNNGC	3 cut(s)	233, 297, 327
BstNI	CCWGG	1 cut(s)	245
BstPI	GGTNACC	1 cut(s)	493
BstSCI	CCNGG	1 cut(s)	243
BstV1I	GCAGC	2 cut(s)	139, 548
BstV2I	GAAGAC	1 cut(s)	205
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BsuRI	GGCC	6 cut(s)	231, 266, 359, 518, 530, 548
BtgZI	GCGATG	1 cut(s)	109
BtsI	GCAGTG	1 cut(s)	322
BtsIMutI	CAGTG	1 cut(s)	322
Cac8I	GCNNGC	3 cut(s)	229, 467, 762
CfoI	GCGC	3 cut(s)	152, 291, 566
Cfr10I	RCCGGY	1 cut(s)	227
Cfr13I	GGNCC	3 cut(s)	230, 265, 529
CseI	GACGC	1 cut(s)	295
Csp6I	GTAC	1 cut(s)	538
CspCI	CAANNNNNGTGG	2 cut(s)	684, 719
CviAII	CATG	4 cut(s)	94, 301, 310, 738
CviQI	GTAC	1 cut(s)	538
DpnI	GATC	6 cut(s)	143, 177, 207, 449, 557, 630
DpnII	GATC	6 cut(s)	141, 175, 205, 447, 555, 628
DraIII	CACNNNGTG	1 cut(s)	669
Eam1104I	CTCTTC	1 cut(s)	416
EarI	CTCTTC	1 cut(s)	416
Eco130I	CCWWGG	2 cut(s)	418, 549
Eco147I	AGGCCT	1 cut(s)	518
Eco88I	CYCGRG	1 cut(s)	194
Eco91I	GGTNACC	1 cut(s)	493
EcoNI	CCTNNNNNAGG	1 cut(s)	260
EcoO65I	GGTNACC	1 cut(s)	493
EcoRI	GAATTC	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	243
EcoT14I	CCWWGG	2 cut(s)	418, 549
ErhI	CCWWGG	2 cut(s)	418, 549
FaeI	CATG	4 cut(s)	97, 304, 313, 741
FaiI	YATR	7 cut(s)	95, 302, 311, 347, 648, 650, 739
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	4 cut(s)	93, 300, 309, 737
FauI	CCCGC	2 cut(s)	198, 241
Fnu4HI	GCNGC	4 cut(s)	153, 225, 328, 562
Fsp4HI	GCNGC	4 cut(s)	153, 225, 328, 562
GlaI	GCGC	3 cut(s)	151, 290, 565
GluI	GCNGC	4 cut(s)	153, 225, 328, 562
GsuI	CTGGAG	1 cut(s)	227
HaeIII	GGCC	6 cut(s)	231, 266, 359, 518, 530, 548
HapII	CCGG	2 cut(s)	228, 727
HgaI	GACGC	1 cut(s)	295
HhaI	GCGC	3 cut(s)	152, 291, 566
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	4 cut(s)	97, 304, 313, 741
Hin6I	GCGC	3 cut(s)	150, 289, 564
HinP1I	GCGC	3 cut(s)	150, 289, 564
HindIII	AAGCTT	2 cut(s)	593, 601
HinfI	GANTC	5 cut(s)	108, 197, 362, 500, 608
HpaII	CCGG	2 cut(s)	228, 727
HphI	GGTGA	7 cut(s)	9, 73, 487, 565, 650, 655, 684
Hpy188I	TCNGA	5 cut(s)	274, 367, 374, 591, 633
Hpy188III	TCNNGA	4 cut(s)	139, 259, 352, 382
HpyAV	CCTTC	5 cut(s)	41, 256, 349, 529, 665
HpyCH4III	ACNGT	2 cut(s)	700, 745
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	2 cut(s)	465, 741
HpyF10VI	GCNNNNNNNGC	3 cut(s)	233, 297, 327
HpySE526I	ACGT	1 cut(s)	252
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	4 cut(s)	97, 304, 313, 741
HspAI	GCGC	3 cut(s)	150, 289, 564
KroI	GCCGGC	1 cut(s)	227
KroNI	GCCGGC	1 cut(s)	229
Kzo9I	GATC	6 cut(s)	141, 175, 205, 447, 555, 628
LmnI	GCTCC	1 cut(s)	274
Lsp1109I	GCAGC	2 cut(s)	139, 548
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	1 cut(s)	493
MalI	GATC	6 cut(s)	143, 177, 207, 449, 557, 630
MboI	GATC	6 cut(s)	141, 175, 205, 447, 555, 628
MboII	GAAGA	2 cut(s)	205, 403
MflI	RGATCY	1 cut(s)	175
MluCI	AATT	2 cut(s)	218, 335
MlyI	GAGTC	3 cut(s)	206, 371, 509
MmeI	TCCRAC	2 cut(s)	390, 747
MroNI	GCCGGC	1 cut(s)	227
MslI	CAYNNNNRTG	1 cut(s)	314
MspI	CCGG	2 cut(s)	228, 727
MspR9I	CCNGG	1 cut(s)	245
MvaI	CCWGG	1 cut(s)	245
MwoI	GCNNNNNNNGC	3 cut(s)	233, 297, 327
NaeI	GCCGGC	1 cut(s)	229
NdeII	GATC	6 cut(s)	141, 175, 205, 447, 555, 628
NgoMIV	GCCGGC	1 cut(s)	227
NlaIII	CATG	4 cut(s)	97, 304, 313, 741
NlaIV	GGNNCC	2 cut(s)	232, 427
NmeAIII	GCCGAG	1 cut(s)	385
NmuCI	GTSAC	1 cut(s)	493
PceI	AGGCCT	1 cut(s)	518
PdiI	GCCGGC	1 cut(s)	229
PfeI	GAWTC	2 cut(s)	108, 608
PfoI	TCCNGGA	1 cut(s)	243
PkrI	GCNGC	4 cut(s)	154, 226, 329, 563
PleI	GAGTC	3 cut(s)	205, 370, 508
PpsI	GAGTC	3 cut(s)	205, 370, 508
Psp6I	CCWGG	1 cut(s)	243
PspEI	GGTNACC	1 cut(s)	493
PspGI	CCWGG	1 cut(s)	243
PspN4I	GGNNCC	2 cut(s)	232, 427
PspPI	GGNCC	3 cut(s)	230, 265, 529
PsuI	RGATCY	1 cut(s)	175
RsaI	GTAC	1 cut(s)	539
RsaNI	GTAC	1 cut(s)	538
RseI	CAYNNNNRTG	1 cut(s)	314
SatI	GCNGC	4 cut(s)	153, 225, 328, 562
Sau3AI	GATC	6 cut(s)	141, 175, 205, 447, 555, 628
Sau96I	GGNCC	3 cut(s)	230, 265, 529
SchI	GAGTC	3 cut(s)	206, 371, 509
ScrFI	CCNGG	1 cut(s)	245
SmiMI	CAYNNNNRTG	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	2 cut(s)	218, 335
SseBI	AGGCCT	1 cut(s)	518
SsiI	CCGC	7 cut(s)	84, 191, 225, 234, 327, 680, 734
SspI	AATATT	2 cut(s)	388, 401
StuI	AGGCCT	1 cut(s)	518
StyD4I	CCNGG	1 cut(s)	243
StyI	CCWWGG	2 cut(s)	418, 549
TaaI	ACNGT	2 cut(s)	700, 745
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	5 cut(s)	140, 606, 708, 714, 747
TasI	AATT	2 cut(s)	218, 335
TatI	WGTACW	1 cut(s)	537
TauI	GCSGC	2 cut(s)	227, 330
TfiI	GAWTC	2 cut(s)	108, 608
TscAI	CASTG	1 cut(s)	329
TseFI	GTSAC	1 cut(s)	493
TseI	GCWGC	2 cut(s)	152, 561
Tsp45I	GTSAC	1 cut(s)	493
TspGWI	ACGGA	1 cut(s)	394
TspRI	CASTG	1 cut(s)	329
XagI	CCTNNNNNAGG	1 cut(s)	260
XapI	RAATTY	2 cut(s)	218, 335
ZraI	GACGTC	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.