Rmu_sc0005319.1_g000020
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005319.1
OG0031341
Physical Location & Seq
Reverse (-)
99722 .. 100063
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005319.1_g000020.1.cds

Sequence Viewer

Length: 342 bp
atgcttaagtgtgaaaggatacgaaaggcctaccatgaaagaagtagcgagaatgcagttcgttttgataaatccaaggcagagagaaacctggccaacctctttgtttctacaattgaagaaaaaggtctgcgcgcactgggtccaattcttgatgatgaaatagtcaaggatggaaactgggagatcatcaaaaaagttgggaagcttgccgaaagatgcttaagtgtgaaaggataccaaaggcctaccatgaaagaagtagagagggagctagatgaaatactgagaactttggcaaaccttgctgcctccttttccaatgggacagacccctcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

113

Amino Acids

12.85

Weight (kDa)

8.58

Isoelectric Point (pI)

31.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031341)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0005319.1_g000020
rosa_roxburghii Rroxscaffold_1G00060050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 135
AcoI YGGCCR 1 cut(s) 93
AflII CTTAAG 2 cut(s) 5, 223
AgsI TTSAA 1 cut(s) 119
AjnI CCWGG 1 cut(s) 90
AluBI AGCT 2 cut(s) 208, 274
AluI AGCT 2 cut(s) 208, 274
AoxI GGCC 3 cut(s) 27, 93, 245
ApeKI GCWGC 1 cut(s) 308
AspLEI GCGC 2 cut(s) 135, 137
AspS9I GGNCC 1 cut(s) 143
AvaII GGWCC 1 cut(s) 143
BalI TGGCCA 1 cut(s) 95
BbvI GCAGC 1 cut(s) 295
BccI CCATC 1 cut(s) 167
BciT130I CCWGG 1 cut(s) 92
BciVI GTATCC 2 cut(s) 12, 230
BfaI CTAG 1 cut(s) 275
BfrI CTTAAG 2 cut(s) 5, 223
BfuI GTATCC 2 cut(s) 12, 230
BisI GCNGC 1 cut(s) 309
BlsI GCNGC 1 cut(s) 310
Bme1390I CCNGG 1 cut(s) 92
Bme18I GGWCC 1 cut(s) 143
BmgT120I GGNCC 1 cut(s) 143
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 1 cut(s) 92
BmrI ACTGGG 2 cut(s) 149, 190
BmsI GCATC 1 cut(s) 209
BmuI ACTGGG 2 cut(s) 149, 190
BsaJI CCNNGG 1 cut(s) 75
Bse1I ACTGG 2 cut(s) 144, 185
BseBI CCWGG 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 1 cut(s) 178
BseMII CTCAG 1 cut(s) 278
BseNI ACTGG 2 cut(s) 144, 185
BsePI GCGCGC 1 cut(s) 133
BseXI GCAGC 1 cut(s) 295
Bsh1236I CGCG 1 cut(s) 135
BshFI GGCC 3 cut(s) 29, 95, 247
BsmI GAATGC 1 cut(s) 58
BsnI GGCC 3 cut(s) 29, 95, 247
Bsp143I GATC 1 cut(s) 186
BspANI GGCC 3 cut(s) 29, 95, 247
BspCNI CTCAG 1 cut(s) 279
BspFNI CGCG 1 cut(s) 135
BspLI GGNNCC 1 cut(s) 144
BspTI CTTAAG 2 cut(s) 5, 223
BsrI ACTGG 2 cut(s) 144, 185
BssECI CCNNGG 1 cut(s) 75
BssHII GCGCGC 1 cut(s) 133
BssMI GATC 1 cut(s) 186
BssT1I CCWWGG 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 92
BstAFI CTTAAG 2 cut(s) 5, 223
BstAPI GCANNNNNTGC 1 cut(s) 305
BstC8I GCNNGC 2 cut(s) 135, 210
BstDEI CTNAG 1 cut(s) 287
BstF5I GGATG 1 cut(s) 178
BstFNI CGCG 1 cut(s) 135
BstHHI GCGC 2 cut(s) 135, 137
BstKTI GATC 1 cut(s) 189
BstMBI GATC 1 cut(s) 186
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNI CCWGG 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 90
BstUI CGCG 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 295
BsuI GTATCC 2 cut(s) 12, 230
BsuRI GGCC 3 cut(s) 29, 95, 247
BtsCI GGATG 1 cut(s) 178
BtsIMutI CAGTG 1 cut(s) 137
Cac8I GCNNGC 2 cut(s) 135, 210
CfoI GCGC 2 cut(s) 135, 137
Cfr13I GGNCC 1 cut(s) 143
CviAII CATG 2 cut(s) 35, 253
CviJI RGCY 5 cut(s) 29, 95, 208, 247, 274
CviKI_1 RGCY 5 cut(s) 29, 95, 208, 247, 274
DdeI CTNAG 1 cut(s) 287
DpnI GATC 1 cut(s) 188
DpnII GATC 1 cut(s) 186
EaeI YGGCCR 1 cut(s) 93
Eco130I CCWWGG 1 cut(s) 75
Eco147I AGGCCT 2 cut(s) 29, 247
Eco47I GGWCC 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 90
EcoT14I CCWWGG 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 75
FaeI CATG 2 cut(s) 38, 256
FaiI YATR 2 cut(s) 36, 254
FatI CATG 2 cut(s) 34, 252
Fnu4HI GCNGC 1 cut(s) 309
FokI GGATG 1 cut(s) 185
Fsp4HI GCNGC 1 cut(s) 309
FspBI CTAG 1 cut(s) 275
GlaI GCGC 2 cut(s) 134, 136
GluI GCNGC 1 cut(s) 309
HaeIII GGCC 3 cut(s) 29, 95, 247
HhaI GCGC 2 cut(s) 135, 137
Hin1II CATG 2 cut(s) 38, 256
Hin6I GCGC 2 cut(s) 133, 135
HinP1I GCGC 2 cut(s) 133, 135
HindIII AAGCTT 1 cut(s) 206
Hpy188III TCNNGA 2 cut(s) 152, 339
HpyCH4V TGCA 1 cut(s) 56
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 1 cut(s) 287
Hsp92II CATG 2 cut(s) 38, 256
HspAI GCGC 2 cut(s) 133, 135
Kzo9I GATC 1 cut(s) 186
LmnI GCTCC 1 cut(s) 271
LpnPI CCDG 4 cut(s) 77, 104, 125, 166
Lsp1109I GCAGC 1 cut(s) 295
LweI GCATC 1 cut(s) 209
MaeI CTAG 1 cut(s) 275
MalI GATC 1 cut(s) 188
MboI GATC 1 cut(s) 186
MboII GAAGA 1 cut(s) 131
MfeI CAATTG 1 cut(s) 114
MlsI TGGCCA 1 cut(s) 95
MluCI AATT 2 cut(s) 114, 147
MluNI TGGCCA 1 cut(s) 95
MnlI CCTC 3 cut(s) 110, 261, 322
Mox20I TGGCCA 1 cut(s) 95
MscI TGGCCA 1 cut(s) 95
MseI TTAA 2 cut(s) 6, 224
Msp20I TGGCCA 1 cut(s) 95
MspCI CTTAAG 2 cut(s) 5, 223
MspR9I CCNGG 1 cut(s) 92
MunI CAATTG 1 cut(s) 114
Mva1269I GAATGC 1 cut(s) 58
MvaI CCWGG 1 cut(s) 92
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 305
NdeII GATC 1 cut(s) 186
NlaIII CATG 2 cut(s) 38, 256
NlaIV GGNNCC 1 cut(s) 144
PauI GCGCGC 1 cut(s) 133
PceI AGGCCT 2 cut(s) 29, 247
PctI GAATGC 1 cut(s) 58
PkrI GCNGC 1 cut(s) 310
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 1 cut(s) 143
PteI GCGCGC 1 cut(s) 133
SaqAI TTAA 2 cut(s) 6, 224
SatI GCNGC 1 cut(s) 309
Sau3AI GATC 1 cut(s) 186
Sau96I GGNCC 1 cut(s) 143
ScrFI CCNGG 1 cut(s) 92
SetI ASST 6 cut(s) 93, 102, 130, 210, 276, 306
SfaNI GCATC 1 cut(s) 209
SinI GGWCC 1 cut(s) 143
SmlI CTYRAG 2 cut(s) 5, 223
SmoI CTYRAG 2 cut(s) 5, 223
Sse9I AATT 2 cut(s) 114, 147
SseBI AGGCCT 2 cut(s) 29, 247
SspMI CTAG 1 cut(s) 275
StuI AGGCCT 2 cut(s) 29, 247
StyD4I CCNGG 1 cut(s) 90
StyI CCWWGG 1 cut(s) 75
TasI AATT 2 cut(s) 114, 147
Tru1I TTAA 2 cut(s) 6, 224
Tru9I TTAA 2 cut(s) 6, 224
TscAI CASTG 1 cut(s) 144
TseI GCWGC 1 cut(s) 308
TspDTI ATGAA 4 cut(s) 51, 174, 269, 294
TspRI CASTG 1 cut(s) 144
Vha464I CTTAAG 2 cut(s) 5, 223
VpaK11BI GGWCC 1 cut(s) 143
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.