Rroxscaffold_1G00060050

Wall-associated receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0031341
Physical Location & Seq
Reverse (-)
82173939 .. 82180695
6757 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00060050.1

Sequence Viewer

Length: 375 bp
ATGAAAATTGTTCATCGAGATGTCAAGGCAACAAATATACTGTCGGATGAGAAACTTACGGCCAAAGCAGAGAGAAACCTGGCCAACCTCTTTGTTACTACAATTAAAGAAAAAGGTCTGCGCGCGCTGGGTCCAATTCTTGATGATGAAATAGTCAAGGATGGAAACTGGGAGATCATCAAAAAAGTTGGGAATCTTGCCGAAAGATGCTTAAGTGTGAAAGGATACGAATGGCCTACCATGAAAGAAATAGAGAGGGAGCTAGATGAAATACTGAGAACTTTGGCAAACCTTGCCTCCTTTTTCCAAAGAGACGTACAGACCCCTCTTGAGTCACATTCAAACGCTTACGGTTATTATCGGTGCAGAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

124

Amino Acids

14.27

Weight (kDa)

7.75

Isoelectric Point (pI)

19.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031341)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0005319.1_g000020
rosa_roxburghii Rroxscaffold_1G00060050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 123, 125
AcoI YGGCCR 2 cut(s) 60, 81
AfaI GTAC 1 cut(s) 318
AflII CTTAAG 1 cut(s) 211
AgsI TTSAA 1 cut(s) 342
AjnI CCWGG 1 cut(s) 78
AluBI AGCT 1 cut(s) 262
AluI AGCT 1 cut(s) 262
Alw26I GTCTC 1 cut(s) 306
AoxI GGCC 3 cut(s) 60, 81, 233
ArsI GACNNNNNNTTYG 2 cut(s) 26, 58
AspLEI GCGC 3 cut(s) 123, 125, 127
AspS9I GGNCC 1 cut(s) 131
AvaII GGWCC 1 cut(s) 131
BalI TGGCCA 1 cut(s) 83
BccI CCATC 1 cut(s) 155
BceAI ACGGC 1 cut(s) 75
BciT130I CCWGG 1 cut(s) 80
BciVI GTATCC 1 cut(s) 218
BcoDI GTCTC 1 cut(s) 306
BfaI CTAG 1 cut(s) 263
BfrI CTTAAG 1 cut(s) 211
BfuI GTATCC 1 cut(s) 218
Bme1390I CCNGG 1 cut(s) 80
Bme18I GGWCC 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 132
BmrFI CCNGG 1 cut(s) 80
BmrI ACTGGG 1 cut(s) 178
BmsI GCATC 1 cut(s) 197
BmuI ACTGGG 1 cut(s) 178
BpuEI CTTGAG 1 cut(s) 350
BsaXI ACNNNNNCTCC 2 cut(s) 281, 311
Bse1I ACTGG 1 cut(s) 173
BseBI CCWGG 1 cut(s) 80
BseGI GGATG 2 cut(s) 52, 166
BseMII CTCAG 1 cut(s) 266
BseNI ACTGG 1 cut(s) 173
BsePI GCGCGC 2 cut(s) 121, 123
BseYI CCCAGC 1 cut(s) 127
Bsh1236I CGCG 2 cut(s) 123, 125
BshFI GGCC 3 cut(s) 62, 83, 235
BsmAI GTCTC 1 cut(s) 306
BsmBI CGTCTC 1 cut(s) 306
BsnI GGCC 3 cut(s) 62, 83, 235
Bsp143I GATC 1 cut(s) 174
BspANI GGCC 3 cut(s) 62, 83, 235
BspCNI CTCAG 1 cut(s) 267
BspFNI CGCG 2 cut(s) 123, 125
BspLI GGNNCC 1 cut(s) 132
BspTI CTTAAG 1 cut(s) 211
BsrI ACTGG 1 cut(s) 173
BssHII GCGCGC 2 cut(s) 121, 123
BssMI GATC 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 80
Bst4CI ACNGT 2 cut(s) 42, 353
BstAFI CTTAAG 1 cut(s) 211
BstAPI GCANNNNNTGC 1 cut(s) 293
BstC8I GCNNGC 2 cut(s) 123, 125
BstDEI CTNAG 1 cut(s) 275
BstF5I GGATG 2 cut(s) 52, 166
BstFNI CGCG 2 cut(s) 123, 125
BstHHI GCGC 3 cut(s) 123, 125, 127
BstKTI GATC 1 cut(s) 177
BstMAI GTCTC 1 cut(s) 306
BstMBI GATC 1 cut(s) 174
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstNI CCWGG 1 cut(s) 80
BstSCI CCNGG 1 cut(s) 78
BstUI CGCG 2 cut(s) 123, 125
BsuI GTATCC 1 cut(s) 218
BsuRI GGCC 3 cut(s) 62, 83, 235
BtsCI GGATG 2 cut(s) 52, 166
Cac8I GCNNGC 2 cut(s) 123, 125
CfoI GCGC 3 cut(s) 123, 125, 127
Cfr13I GGNCC 1 cut(s) 131
Csp6I GTAC 1 cut(s) 317
CviAII CATG 1 cut(s) 241
CviJI RGCY 4 cut(s) 62, 83, 235, 262
CviKI_1 RGCY 4 cut(s) 62, 83, 235, 262
CviQI GTAC 1 cut(s) 317
DdeI CTNAG 1 cut(s) 275
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
EaeI YGGCCR 2 cut(s) 60, 81
Eco47I GGWCC 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 78
Esp3I CGTCTC 1 cut(s) 306
FaeI CATG 1 cut(s) 244
FaiI YATR 3 cut(s) 38, 242, 373
FatI CATG 1 cut(s) 240
FokI GGATG 2 cut(s) 59, 173
FspBI CTAG 1 cut(s) 263
GlaI GCGC 3 cut(s) 122, 124, 126
GsaI CCCAGC 1 cut(s) 131
HaeIII GGCC 3 cut(s) 62, 83, 235
HhaI GCGC 3 cut(s) 123, 125, 127
Hin1II CATG 1 cut(s) 244
Hin6I GCGC 3 cut(s) 121, 123, 125
HinP1I GCGC 3 cut(s) 121, 123, 125
HinfI GANTC 2 cut(s) 193, 332
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 3 cut(s) 17, 140, 329
HpyCH4III ACNGT 2 cut(s) 42, 353
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 1 cut(s) 366
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
HpyF3I CTNAG 1 cut(s) 275
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 1 cut(s) 244
HspAI GCGC 3 cut(s) 121, 123, 125
Kzo9I GATC 1 cut(s) 174
LmnI GCTCC 1 cut(s) 259
LpnPI CCDG 4 cut(s) 65, 92, 113, 154
LweI GCATC 1 cut(s) 197
MaeI CTAG 1 cut(s) 263
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 2 cut(s) 94, 333
MalI GATC 1 cut(s) 176
MboI GATC 1 cut(s) 174
MlsI TGGCCA 1 cut(s) 83
MluCI AATT 3 cut(s) 6, 102, 135
MluNI TGGCCA 1 cut(s) 83
MlyI GAGTC 1 cut(s) 341
MmeI TCCRAC 1 cut(s) 24
MnlI CCTC 4 cut(s) 98, 249, 307, 336
Mox20I TGGCCA 1 cut(s) 83
MscI TGGCCA 1 cut(s) 83
MseI TTAA 2 cut(s) 105, 212
MslI CAYNNNNRTG 1 cut(s) 18
Msp20I TGGCCA 1 cut(s) 83
MspCI CTTAAG 1 cut(s) 211
MspR9I CCNGG 1 cut(s) 80
MvaI CCWGG 1 cut(s) 80
MvnI CGCG 2 cut(s) 123, 125
MwoI GCNNNNNNNGC 1 cut(s) 293
NdeII GATC 1 cut(s) 174
NlaIII CATG 1 cut(s) 244
NlaIV GGNNCC 1 cut(s) 132
NmuCI GTSAC 1 cut(s) 333
PauI GCGCGC 2 cut(s) 121, 123
PfeI GAWTC 1 cut(s) 193
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
Psp6I CCWGG 1 cut(s) 78
PspFI CCCAGC 1 cut(s) 127
PspGI CCWGG 1 cut(s) 78
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 1 cut(s) 131
PteI GCGCGC 2 cut(s) 121, 123
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
RseI CAYNNNNRTG 1 cut(s) 18
SaqAI TTAA 2 cut(s) 105, 212
Sau3AI GATC 1 cut(s) 174
Sau96I GGNCC 1 cut(s) 131
SchI GAGTC 1 cut(s) 341
ScrFI CCNGG 1 cut(s) 80
SetI ASST 6 cut(s) 81, 90, 118, 264, 294, 318
SfaNI GCATC 1 cut(s) 197
SinI GGWCC 1 cut(s) 131
SmiMI CAYNNNNRTG 1 cut(s) 18
SmlI CTYRAG 2 cut(s) 211, 329
SmoI CTYRAG 2 cut(s) 211, 329
Sse9I AATT 3 cut(s) 6, 102, 135
SspMI CTAG 1 cut(s) 263
StyD4I CCNGG 1 cut(s) 78
TaaI ACNGT 2 cut(s) 42, 353
TaiI ACGT 1 cut(s) 318
TaqI TCGA 1 cut(s) 16
TasI AATT 3 cut(s) 6, 102, 135
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 2 cut(s) 105, 212
Tru9I TTAA 2 cut(s) 105, 212
TseFI GTSAC 1 cut(s) 333
Tsp45I GTSAC 1 cut(s) 333
TspDTI ATGAA 4 cut(s) 17, 162, 257, 282
Vha464I CTTAAG 1 cut(s) 211
VpaK11BI GGWCC 1 cut(s) 131
XspI CTAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.