Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005385.1

Orthogroup ID

OG0025596

Physical Location & Seq

Genomic Coordinates Reverse (-)

888 .. 1145

Gene Structure 258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005385.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

atgccgtcagtggccaccatcctccgccggaagctcacgggcaatccattccacttccgattaccatcactccgatcgttatccgactcgccgtatagaatcgagaagattctgatagccaacagaggcgaaatcatgaggaccgaaaagagactcagaattcaaaccgtcgccgtcttcagcgacgccgatagacactcgctccaccaaatcctccgacgaggcagttcgtatcggtccggctccggctcagcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004485 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005840 GO:0006082 GO:0006520 GO:0006551 GO:0006552 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009507 GO:0009536 GO:0009987 GO:0016054 GO:0016421 GO:0016874 GO:0016885 GO:0019752 GO:0022626 GO:0031974 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046395 GO:0046872 GO:0046914 GO:0050897 GO:0070013 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00280 ko01100 map00280 map01100

Pfam Domains

Protein Families

Biotin_carb_C Biotin_carb_N Biotin_lipoyl CPSase_L_D2

Protein Analysis

85

Amino Acids

9.68

Weight (kDa)

11.66

Isoelectric Point (pI)

74.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025596)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8445259.1_g000002 Rmu_sc0005385.1_g000001
rosa_samantha	Rh6AG379700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	25
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	159
AcuI	CTGAAG	1 cut(s)	163
AcyI	GRCGYC	1 cut(s)	186
AgsI	TTSAA	1 cut(s)	164
AluBI	AGCT	2 cut(s)	34, 254
AluI	AGCT	2 cut(s)	34, 254
Alw26I	GTCTC	1 cut(s)	145
AoxI	GGCC	1 cut(s)	12
ApoI	RAATTY	1 cut(s)	159
AspS9I	GGNCC	2 cut(s)	141, 237
AvaII	GGWCC	2 cut(s)	141, 237
BalI	TGGCCA	1 cut(s)	14
BbsI	GAAGAC	1 cut(s)	169
BccI	CCATC	2 cut(s)	26, 73
BceAI	ACGGC	2 cut(s)	76, 158
BcoDI	GTCTC	1 cut(s)	145
BlpI	GCTNAGC	1 cut(s)	250
Bme18I	GGWCC	2 cut(s)	141, 237
BmgT120I	GGNCC	2 cut(s)	141, 237
BmiI	GGNNCC	1 cut(s)	244
BpiI	GAAGAC	1 cut(s)	169
Bpu1102I	GCTNAGC	1 cut(s)	250
BsaBI	GATNNNNATC	2 cut(s)	64, 79
BsaHI	GRCGYC	1 cut(s)	186
BsaXI	ACNNNNNCTCC	4 cut(s)	54, 84, 186, 216
Bse8I	GATNNNNATC	2 cut(s)	64, 79
BseGI	GGATG	1 cut(s)	18
BseJI	GATNNNNATC	2 cut(s)	64, 79
BseMII	CTCAG	1 cut(s)	169
Bsh1285I	CGRYCG	1 cut(s)	77
BshFI	GGCC	1 cut(s)	14
BsiEI	CGRYCG	1 cut(s)	77
BsiSI	CCGG	3 cut(s)	28, 240, 246
BsmAI	GTCTC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	14
Bsp143I	GATC	1 cut(s)	74
Bsp1720I	GCTNAGC	1 cut(s)	250
BspACI	CCGC	1 cut(s)	25
BspANI	GGCC	1 cut(s)	14
BspCNI	CTCAG	1 cut(s)	168
BspHI	TCATGA	1 cut(s)	135
BspLI	GGNNCC	1 cut(s)	244
BssMI	GATC	1 cut(s)	74
BssNI	GRCGYC	1 cut(s)	186
Bst4CI	ACNGT	1 cut(s)	169
BstACI	GRCGYC	1 cut(s)	186
BstDEI	CTNAG	3 cut(s)	155, 250, 255
BstF5I	GGATG	1 cut(s)	18
BstKTI	GATC	1 cut(s)	77
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	1 cut(s)	74
BstMCI	CGRYCG	1 cut(s)	77
BstV2I	GAAGAC	1 cut(s)	169
BsuRI	GGCC	1 cut(s)	14
BtsCI	GGATG	1 cut(s)	18
BtsIMutI	CAGTG	1 cut(s)	15
CciI	TCATGA	1 cut(s)	135
Cfr13I	GGNCC	2 cut(s)	141, 237
CpoI	CGGWCCG	1 cut(s)	237
CseI	GACGC	1 cut(s)	194
CspI	CGGWCCG	1 cut(s)	237
CviAII	CATG	1 cut(s)	136
CviJI	RGCY	6 cut(s)	14, 34, 119, 243, 249, 254
CviKI_1	RGCY	6 cut(s)	14, 34, 119, 243, 249, 254
DdeI	CTNAG	3 cut(s)	155, 250, 255
DpnI	GATC	1 cut(s)	76
DpnII	GATC	1 cut(s)	74
EaeI	YGGCCR	1 cut(s)	12
EciI	GGCGGA	1 cut(s)	14
Eco47I	GGWCC	2 cut(s)	141, 237
Eco57I	CTGAAG	1 cut(s)	163
EcoRI	GAATTC	1 cut(s)	159
FaeI	CATG	1 cut(s)	139
FaiI	YATR	2 cut(s)	96, 137
FatI	CATG	1 cut(s)	135
FokI	GGATG	1 cut(s)	5
HaeIII	GGCC	1 cut(s)	14
HapII	CCGG	3 cut(s)	28, 240, 246
HgaI	GACGC	1 cut(s)	194
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	1 cut(s)	139
HinfI	GANTC	4 cut(s)	86, 99, 109, 153
HpaII	CCGG	3 cut(s)	28, 240, 246
Hpy188I	TCNGA	6 cut(s)	59, 74, 85, 114, 158, 218
Hpy188III	TCNNGA	2 cut(s)	103, 136
Hpy99I	CGWCG	3 cut(s)	173, 188, 222
HpyCH4III	ACNGT	1 cut(s)	169
HpyF3I	CTNAG	3 cut(s)	155, 250, 255
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	1 cut(s)	139
Kzo9I	GATC	1 cut(s)	74
LmnI	GCTCC	2 cut(s)	207, 248
LpnPI	CCDG	2 cut(s)	41, 253
MalI	GATC	1 cut(s)	76
MboI	GATC	1 cut(s)	74
MboII	GAAGA	2 cut(s)	118, 169
MlsI	TGGCCA	1 cut(s)	14
MluCI	AATT	1 cut(s)	159
MluNI	TGGCCA	1 cut(s)	14
MlyI	GAGTC	2 cut(s)	80, 147
MmeI	TCCRAC	2 cut(s)	108, 241
MnlI	CCTC	5 cut(s)	32, 119, 132, 215, 224
Mox20I	TGGCCA	1 cut(s)	14
MscI	TGGCCA	1 cut(s)	14
Msp20I	TGGCCA	1 cut(s)	14
MspI	CCGG	3 cut(s)	28, 240, 246
NdeII	GATC	1 cut(s)	74
NlaIII	CATG	1 cut(s)	139
NlaIV	GGNNCC	1 cut(s)	244
PagI	TCATGA	1 cut(s)	135
PfeI	GAWTC	2 cut(s)	99, 109
Ple19I	CGATCG	1 cut(s)	77
PleI	GAGTC	2 cut(s)	80, 147
PpsI	GAGTC	2 cut(s)	80, 147
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	2 cut(s)	141, 237
PvuI	CGATCG	1 cut(s)	77
Rsr2I	CGGWCCG	1 cut(s)	237
RsrII	CGGWCCG	1 cut(s)	237
Sau3AI	GATC	1 cut(s)	74
Sau96I	GGNCC	2 cut(s)	141, 237
SchI	GAGTC	2 cut(s)	80, 147
SetI	ASST	2 cut(s)	36, 256
SgeI	CNNG	9 cut(s)	40, 49, 51, 100, 115, 148, 211, 233, 252
SinI	GGWCC	2 cut(s)	141, 237
Sse9I	AATT	1 cut(s)	159
SsiI	CCGC	1 cut(s)	25
TaaI	ACNGT	1 cut(s)	169
TaqI	TCGA	1 cut(s)	102
TaqII	GACCGA	2 cut(s)	158, 225
TasI	AATT	1 cut(s)	159
TfiI	GAWTC	2 cut(s)	99, 109
TscAI	CASTG	1 cut(s)	15
TspRI	CASTG	1 cut(s)	15
VpaK11BI	GGWCC	2 cut(s)	141, 237
XapI	RAATTY	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.