Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0025596

Physical Location & Seq

Genomic Coordinates Reverse (-)

57843838 .. 57844954

Gene Structure 1117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG379700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGCCGTCAGTGGCCACCATCCTCCGCCGGAAGCTCACGGGCAATCCATTCCACTTCCGATTACCATCACTCCGATCGTTATCCGACTCGCCGTATAGAATCGAGAAGATTCTGATAGCCAACAGAGGCGAAATCATGAGGACCGAAAAGAGACTCAGAATTCAAACCGTCGCCGTCTTCAGCGACGCCGATAGACACTCGCTCCACCAAATCCTCCGACGAGGCCGTTCGTATCGGTCCGGCTCCGGCTCAGCTCAGCCACCTCAACGCCTCGTCGATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004485 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005840 GO:0006082 GO:0006520 GO:0006551 GO:0006552 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009507 GO:0009536 GO:0009987 GO:0016054 GO:0016421 GO:0016874 GO:0016885 GO:0019752 GO:0022626 GO:0031974 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046395 GO:0046872 GO:0046914 GO:0050897 GO:0070013 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00280 ko01100 map00280 map01100

Pfam Domains

Protein Families

Biotin_carb_C Biotin_carb_N Biotin_lipoyl CPSase_L_D2

Protein Analysis

94

Amino Acids

10.77

Weight (kDa)

11.71

Isoelectric Point (pI)

77.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Biotin_carb_N	PF00289	34 - 70	8.6e-07	Biotin carboxylase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0025596)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8445259.1_g000002 Rmu_sc0005385.1_g000001
rosa_samantha	Rh6AG379700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	25
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	159
AcuI	CTGAAG	1 cut(s)	163
AcyI	GRCGYC	1 cut(s)	186
AgsI	TTSAA	1 cut(s)	164
AluBI	AGCT	2 cut(s)	34, 254
AluI	AGCT	2 cut(s)	34, 254
Alw26I	GTCTC	1 cut(s)	145
AoxI	GGCC	2 cut(s)	12, 223
ApoI	RAATTY	1 cut(s)	159
AspS9I	GGNCC	2 cut(s)	141, 237
AvaII	GGWCC	2 cut(s)	141, 237
BalI	TGGCCA	1 cut(s)	14
BbsI	GAAGAC	1 cut(s)	169
BccI	CCATC	2 cut(s)	26, 73
BceAI	ACGGC	3 cut(s)	76, 158, 210
BcoDI	GTCTC	1 cut(s)	145
BlpI	GCTNAGC	2 cut(s)	250, 255
Bme18I	GGWCC	2 cut(s)	141, 237
BmgT120I	GGNCC	2 cut(s)	141, 237
BmiI	GGNNCC	1 cut(s)	244
BpiI	GAAGAC	1 cut(s)	169
Bpu1102I	GCTNAGC	2 cut(s)	250, 255
BsaBI	GATNNNNATC	2 cut(s)	64, 79
BsaHI	GRCGYC	1 cut(s)	186
BsaXI	ACNNNNNCTCC	4 cut(s)	54, 84, 186, 216
Bse8I	GATNNNNATC	2 cut(s)	64, 79
BseGI	GGATG	1 cut(s)	18
BseJI	GATNNNNATC	2 cut(s)	64, 79
BseMII	CTCAG	3 cut(s)	169, 264, 269
Bsh1285I	CGRYCG	1 cut(s)	77
BshFI	GGCC	2 cut(s)	14, 225
BsiEI	CGRYCG	1 cut(s)	77
BsiSI	CCGG	3 cut(s)	28, 240, 246
BsmAI	GTCTC	1 cut(s)	145
BsnI	GGCC	2 cut(s)	14, 225
Bsp143I	GATC	1 cut(s)	74
Bsp1720I	GCTNAGC	2 cut(s)	250, 255
BspACI	CCGC	1 cut(s)	25
BspANI	GGCC	2 cut(s)	14, 225
BspCNI	CTCAG	3 cut(s)	168, 263, 268
BspHI	TCATGA	1 cut(s)	135
BspLI	GGNNCC	1 cut(s)	244
BssMI	GATC	1 cut(s)	74
BssNI	GRCGYC	1 cut(s)	186
Bst4CI	ACNGT	1 cut(s)	169
BstACI	GRCGYC	1 cut(s)	186
BstDEI	CTNAG	3 cut(s)	155, 250, 255
BstF5I	GGATG	1 cut(s)	18
BstKTI	GATC	1 cut(s)	77
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	1 cut(s)	74
BstMCI	CGRYCG	1 cut(s)	77
BstV2I	GAAGAC	1 cut(s)	169
BsuRI	GGCC	2 cut(s)	14, 225
BtsCI	GGATG	1 cut(s)	18
BtsIMutI	CAGTG	1 cut(s)	15
CciI	TCATGA	1 cut(s)	135
Cfr13I	GGNCC	2 cut(s)	141, 237
CpoI	CGGWCCG	1 cut(s)	237
CseI	GACGC	1 cut(s)	194
CspI	CGGWCCG	1 cut(s)	237
CviAII	CATG	1 cut(s)	136
CviJI	RGCY	8 cut(s)	14, 34, 119, 225, 243, 249, 254, 259
CviKI_1	RGCY	8 cut(s)	14, 34, 119, 225, 243, 249, 254, 259
DdeI	CTNAG	3 cut(s)	155, 250, 255
DpnI	GATC	1 cut(s)	76
DpnII	GATC	1 cut(s)	74
EaeI	YGGCCR	1 cut(s)	12
EciI	GGCGGA	1 cut(s)	14
Eco47I	GGWCC	2 cut(s)	141, 237
Eco57I	CTGAAG	1 cut(s)	163
EcoRI	GAATTC	1 cut(s)	159
FaeI	CATG	1 cut(s)	139
FaiI	YATR	2 cut(s)	96, 137
FatI	CATG	1 cut(s)	135
FokI	GGATG	1 cut(s)	5
HaeIII	GGCC	2 cut(s)	14, 225
HapII	CCGG	3 cut(s)	28, 240, 246
HgaI	GACGC	1 cut(s)	194
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	1 cut(s)	139
HinfI	GANTC	5 cut(s)	86, 99, 109, 153, 278
HpaII	CCGG	3 cut(s)	28, 240, 246
Hpy188I	TCNGA	6 cut(s)	59, 74, 85, 114, 158, 218
Hpy188III	TCNNGA	3 cut(s)	103, 136, 282
Hpy99I	CGWCG	4 cut(s)	173, 188, 222, 278
HpyCH4III	ACNGT	1 cut(s)	169
HpyF3I	CTNAG	3 cut(s)	155, 250, 255
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	1 cut(s)	139
Kzo9I	GATC	1 cut(s)	74
LmnI	GCTCC	2 cut(s)	207, 248
LpnPI	CCDG	3 cut(s)	41, 253, 259
MalI	GATC	1 cut(s)	76
MboI	GATC	1 cut(s)	74
MboII	GAAGA	2 cut(s)	118, 169
MlsI	TGGCCA	1 cut(s)	14
MluCI	AATT	1 cut(s)	159
MluNI	TGGCCA	1 cut(s)	14
MlyI	GAGTC	2 cut(s)	80, 147
MmeI	TCCRAC	2 cut(s)	108, 241
MnlI	CCTC	7 cut(s)	32, 119, 132, 215, 224, 273, 281
Mox20I	TGGCCA	1 cut(s)	14
MscI	TGGCCA	1 cut(s)	14
Msp20I	TGGCCA	1 cut(s)	14
MspI	CCGG	3 cut(s)	28, 240, 246
NdeII	GATC	1 cut(s)	74
NlaIII	CATG	1 cut(s)	139
NlaIV	GGNNCC	1 cut(s)	244
PagI	TCATGA	1 cut(s)	135
PfeI	GAWTC	3 cut(s)	99, 109, 278
Ple19I	CGATCG	1 cut(s)	77
PleI	GAGTC	2 cut(s)	80, 147
PpsI	GAGTC	2 cut(s)	80, 147
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	2 cut(s)	141, 237
PvuI	CGATCG	1 cut(s)	77
Rsr2I	CGGWCCG	1 cut(s)	237
RsrII	CGGWCCG	1 cut(s)	237
Sau3AI	GATC	1 cut(s)	74
Sau96I	GGNCC	2 cut(s)	141, 237
SchI	GAGTC	2 cut(s)	80, 147
SetI	ASST	3 cut(s)	36, 256, 265
SinI	GGWCC	2 cut(s)	141, 237
Sse9I	AATT	1 cut(s)	159
SsiI	CCGC	1 cut(s)	25
TaaI	ACNGT	1 cut(s)	169
TaqI	TCGA	2 cut(s)	102, 276
TaqII	GACCGA	2 cut(s)	158, 225
TasI	AATT	1 cut(s)	159
TfiI	GAWTC	3 cut(s)	99, 109, 278
TscAI	CASTG	1 cut(s)	15
TspRI	CASTG	1 cut(s)	15
VpaK11BI	GGWCC	2 cut(s)	141, 237
XapI	RAATTY	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.