Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005454.1

Orthogroup ID

OG0023113

Physical Location & Seq

Genomic Coordinates Reverse (-)

53842 .. 55942

Gene Structure 2101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

atgaccaagaaaaagggaatcatggcttgggtctcgtcatcctcttttgatgtgggagttgttctcgacggaaattcattgtccgacatttcatatccgttcatccgaaatgtgaaccacaatggcgtggaatcctgcgtaaccgctactccggcgacggcgactcagctgagcggagtggattacgaggtgatgaggtacaaagagaagaggaagaagcataagttccagaggataatccgatacgcctcccggaaaacctatgcagaaacccggtcaagaatcaaaggctggttggcaaaagcactgaaacagaaatggaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

108

Amino Acids

12.4

Weight (kDa)

10.29

Isoelectric Point (pI)

37.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	63 - 98	6.3e-12	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023113)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005454.1_g000019
rosa_roxburghii	Rroxscaffold_3G00248600
rosa_samantha	Rh4BG200200 Rh6AG421600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	174
AciI	CCGC	2 cut(s)	144, 174
AcsI	RAATTY	1 cut(s)	73
AfaI	GTAC	1 cut(s)	200
AjuI	GAANNNNNNNTTGG	2 cut(s)	10, 42
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
Alw26I	GTCTC	1 cut(s)	37
ApoI	RAATTY	1 cut(s)	73
AsuC2I	CCSGG	2 cut(s)	253, 274
AsuHPI	GGTGA	1 cut(s)	202
BceAI	ACGGC	1 cut(s)	174
BcnI	CCSGG	2 cut(s)	253, 274
BcoDI	GTCTC	1 cut(s)	37
BlpI	GCTNAGC	1 cut(s)	170
Bme1390I	CCNGG	2 cut(s)	253, 274
BmrFI	CCNGG	2 cut(s)	253, 274
BplI	GAGNNNNNCTC	2 cut(s)	48, 80
Bpu1102I	GCTNAGC	1 cut(s)	170
BpuMI	CCSGG	2 cut(s)	253, 274
BsaI	GGTCTC	1 cut(s)	37
BsaXI	ACNNNNNCTCC	2 cut(s)	133, 163
BseGI	GGATG	2 cut(s)	38, 102
BseMII	CTCAG	2 cut(s)	161, 179
BsiSI	CCGG	3 cut(s)	152, 253, 274
BsmAI	GTCTC	1 cut(s)	37
Bso31I	GGTCTC	1 cut(s)	37
Bsp1720I	GCTNAGC	1 cut(s)	170
BspACI	CCGC	2 cut(s)	144, 174
BspCNI	CTCAG	2 cut(s)	162, 178
BspTNI	GGTCTC	1 cut(s)	37
BsrBI	CCGCTC	1 cut(s)	174
Bst6I	CTCTTC	1 cut(s)	203
BstDEI	CTNAG	2 cut(s)	165, 170
BstF5I	GGATG	2 cut(s)	38, 102
BstMAI	GTCTC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstSCI	CCNGG	2 cut(s)	251, 272
BtsCI	GGATG	2 cut(s)	38, 102
BtsIMutI	CAGTG	1 cut(s)	305
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	1 cut(s)	22
CviJI	RGCY	3 cut(s)	26, 169, 291
CviKI_1	RGCY	3 cut(s)	26, 169, 291
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	2 cut(s)	165, 170
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
Eco31I	GGTCTC	1 cut(s)	37
FaeI	CATG	1 cut(s)	25
FaiI	YATR	4 cut(s)	23, 94, 222, 264
FatI	CATG	1 cut(s)	21
FokI	GGATG	2 cut(s)	25, 89
HapII	CCGG	3 cut(s)	152, 253, 274
Hin1II	CATG	1 cut(s)	25
HinfI	GANTC	4 cut(s)	18, 131, 163, 282
HpaII	CCGG	3 cut(s)	152, 253, 274
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	3 cut(s)	85, 107, 242
Hpy188III	TCNNGA	3 cut(s)	65, 229, 279
Hpy8I	GTNNAC	1 cut(s)	115
Hpy99I	CGWCG	2 cut(s)	71, 160
HpyCH4V	TGCA	1 cut(s)	266
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	2 cut(s)	165, 170
Hsp92II	CATG	1 cut(s)	25
LpnPI	CCDG	6 cut(s)	148, 165, 242, 266, 277, 287
MaeIII	GTNAC	1 cut(s)	139
MbiI	CCGCTC	1 cut(s)	174
MboII	GAAGA	2 cut(s)	220, 226
MluCI	AATT	1 cut(s)	73
MlyI	GAGTC	1 cut(s)	157
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	7 cut(s)	52, 181, 189, 204, 225, 259, 315
MspA1I	CMGCKG	1 cut(s)	169
MspI	CCGG	3 cut(s)	152, 253, 274
MspR9I	CCNGG	2 cut(s)	253, 274
MwoI	GCNNNNNNNGC	1 cut(s)	152
NciI	CCSGG	2 cut(s)	253, 274
NlaIII	CATG	1 cut(s)	25
PfeI	GAWTC	3 cut(s)	18, 131, 282
PfoI	TCCNGGA	1 cut(s)	251
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
PvuII	CAGCTG	1 cut(s)	169
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
SchI	GAGTC	1 cut(s)	157
ScrFI	CCNGG	2 cut(s)	253, 274
SetI	ASST	5 cut(s)	171, 192, 200, 263, 326
Sse9I	AATT	1 cut(s)	73
SsiI	CCGC	2 cut(s)	144, 174
StyD4I	CCNGG	2 cut(s)	251, 272
TaqI	TCGA	1 cut(s)	66
TasI	AATT	1 cut(s)	73
TfiI	GAWTC	3 cut(s)	18, 131, 282
TscAI	CASTG	1 cut(s)	312
TspDTI	ATGAA	3 cut(s)	66, 81, 91
TspGWI	ACGGA	2 cut(s)	84, 87
TspRI	CASTG	1 cut(s)	312
XapI	RAATTY	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.