Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0023113

Physical Location & Seq

Genomic Coordinates Forward (+)

61472047 .. 61474375

Gene Structure 2329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG421600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGTCTCGTCATCCTCTTTTGATGTGGGAGTTGTTCTCGACGGAAATTCATTGTCCGACATTTCATATCCGTTCATCCGAAATGTGAACCACAATGGCGTGGAATCCTGCGTAACCGCTACTCCGGTGACGGCGACTCAGCTGAGCGGAGTGGATTACGAGGTGATGAGTTACAAAGAGAAGAGGAAGAAGCATAAGTTCCAGAGGACAATCCGATACGCCTCCCGGAAAACCTATGCCGAAACCCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

83

Amino Acids

9.35

Weight (kDa)

9.41

Isoelectric Point (pI)

43.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	55 - 83	1.4e-07	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023113)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005454.1_g000019
rosa_roxburghii	Rroxscaffold_3G00248600
rosa_samantha	Rh4BG200200 Rh6AG421600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	147
AciI	CCGC	2 cut(s)	117, 147
AcsI	RAATTY	1 cut(s)	46
AfiI	CCNNNNNNNGG	1 cut(s)	246
AluBI	AGCT	1 cut(s)	142
AluI	AGCT	1 cut(s)	142
Alw26I	GTCTC	1 cut(s)	10
ApoI	RAATTY	1 cut(s)	46
AsuC2I	CCSGG	2 cut(s)	226, 247
AsuHPI	GGTGA	2 cut(s)	139, 175
BceAI	ACGGC	1 cut(s)	147
BcnI	CCSGG	2 cut(s)	226, 247
BcoDI	GTCTC	1 cut(s)	10
BlpI	GCTNAGC	1 cut(s)	143
Bme1390I	CCNGG	2 cut(s)	226, 247
BmrFI	CCNGG	2 cut(s)	226, 247
BplI	GAGNNNNNCTC	2 cut(s)	21, 53
Bpu1102I	GCTNAGC	1 cut(s)	143
BpuMI	CCSGG	2 cut(s)	226, 247
BsaI	GGTCTC	1 cut(s)	10
BsaWI	WCCGGW	1 cut(s)	124
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	1 cut(s)	246
BseGI	GGATG	2 cut(s)	11, 75
BseLI	CCNNNNNNNGG	1 cut(s)	246
BseMII	CTCAG	2 cut(s)	134, 152
BsiSI	CCGG	3 cut(s)	125, 226, 247
BslI	CCNNNNNNNGG	1 cut(s)	246
BsmAI	GTCTC	1 cut(s)	10
Bso31I	GGTCTC	1 cut(s)	10
Bsp1720I	GCTNAGC	1 cut(s)	143
BspACI	CCGC	2 cut(s)	117, 147
BspCNI	CTCAG	2 cut(s)	135, 151
BspTNI	GGTCTC	1 cut(s)	10
BsrBI	CCGCTC	1 cut(s)	147
Bst6I	CTCTTC	1 cut(s)	176
BstDEI	CTNAG	2 cut(s)	138, 143
BstF5I	GGATG	2 cut(s)	11, 75
BstMAI	GTCTC	1 cut(s)	10
BstSCI	CCNGG	2 cut(s)	224, 245
BtsCI	GGATG	2 cut(s)	11, 75
CviJI	RGCY	1 cut(s)	142
CviKI_1	RGCY	1 cut(s)	142
DdeI	CTNAG	2 cut(s)	138, 143
Eam1104I	CTCTTC	1 cut(s)	176
EarI	CTCTTC	1 cut(s)	176
Eco31I	GGTCTC	1 cut(s)	10
FaiI	YATR	3 cut(s)	67, 195, 237
FokI	GGATG	1 cut(s)	62
HapII	CCGG	3 cut(s)	125, 226, 247
HinfI	GANTC	2 cut(s)	104, 136
HpaII	CCGG	3 cut(s)	125, 226, 247
HphI	GGTGA	2 cut(s)	139, 175
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	3 cut(s)	58, 80, 215
Hpy188III	TCNNGA	2 cut(s)	38, 202
Hpy8I	GTNNAC	1 cut(s)	88
Hpy99I	CGWCG	1 cut(s)	44
HpyF3I	CTNAG	2 cut(s)	138, 143
LpnPI	CCDG	4 cut(s)	121, 138, 215, 239
MaeIII	GTNAC	3 cut(s)	112, 127, 170
MbiI	CCGCTC	1 cut(s)	147
MboII	GAAGA	2 cut(s)	193, 199
MluCI	AATT	1 cut(s)	46
MlyI	GAGTC	1 cut(s)	130
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	5 cut(s)	25, 154, 177, 198, 232
MspA1I	CMGCKG	1 cut(s)	142
MspI	CCGG	3 cut(s)	125, 226, 247
MspR9I	CCNGG	2 cut(s)	226, 247
NciI	CCSGG	2 cut(s)	226, 247
NmuCI	GTSAC	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	104
PfoI	TCCNGGA	1 cut(s)	224
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
PvuII	CAGCTG	1 cut(s)	142
SchI	GAGTC	1 cut(s)	130
ScrFI	CCNGG	2 cut(s)	226, 247
SetI	ASST	3 cut(s)	144, 165, 236
SgeI	CNNG	9 cut(s)	19, 50, 112, 120, 137, 172, 214, 237, 238
Sse9I	AATT	1 cut(s)	46
SsiI	CCGC	2 cut(s)	117, 147
StyD4I	CCNGG	2 cut(s)	224, 245
TaqI	TCGA	1 cut(s)	39
TasI	AATT	1 cut(s)	46
TfiI	GAWTC	1 cut(s)	104
TseFI	GTSAC	1 cut(s)	127
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	3 cut(s)	39, 54, 64
TspGWI	ACGGA	2 cut(s)	57, 60
XapI	RAATTY	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.