Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0023113

Physical Location & Seq

Genomic Coordinates Forward (+)

41943314 .. 41948441

Gene Structure 5128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00248600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGCCGCGTCAACTTTGGCCAAAGTCTCGTCATTTTCTTTTGATGTGGGAGTTGTTCTCGACGGAAATTCATTGTCCGGCATTATGTGAACCACAACAGTGTGGAATCCAGCGTAACCGTTGCTCCGGGGACGGCAACTCGGTGGGCGGAGTGGATTACGAGGTGATGAGGTATAGAGAGAAAAGGAAGAAACACAAGTTCCGGAGGACAATCCGATACGCCTCCCGGAAAGCCTATGCCGAAACCCGGTCGAGAATCAAAGAACTTGTATGTTGGCATTCCCTTTATACAAAACTAGAGAGTTCTAGCTTAAGAGTGTGTTTGAGAAGAATGATCTTAACAATTGAAATTGAGGTTCATGGCTTGAAACACAAGACAAGATCCTACCGACTCATATGGAAGGTCCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009889 GO:0009909 GO:0009987 GO:0010017 GO:0010099 GO:0010114 GO:0010161 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0080090 GO:0097159 GO:0104004 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000030 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

136

Amino Acids

16.44

Weight (kDa)

10.26

Isoelectric Point (pI)

66.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	54 - 87	2.7e-09	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023113)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005454.1_g000019
rosa_roxburghii	Rroxscaffold_3G00248600
rosa_samantha	Rh4BG200200 Rh6AG421600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	7
AccIII	TCCGGA	1 cut(s)	201
AciI	CCGC	2 cut(s)	5, 147
AclWI	GGATC	1 cut(s)	375
AcoI	YGGCCR	1 cut(s)	17
AcsI	RAATTY	1 cut(s)	66
AfiI	CCNNNNNNNGG	1 cut(s)	246
AflII	CTTAAG	1 cut(s)	310
AgsI	TTSAA	2 cut(s)	347, 367
AleI	CACNNNNGTG	1 cut(s)	97
AluBI	AGCT	1 cut(s)	309
AluI	AGCT	1 cut(s)	309
Alw26I	GTCTC	1 cut(s)	30
AlwI	GGATC	1 cut(s)	375
Aor13HI	TCCGGA	1 cut(s)	201
AoxI	GGCC	1 cut(s)	17
ApoI	RAATTY	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	403
AsuC2I	CCSGG	3 cut(s)	127, 226, 247
AsuHPI	GGTGA	1 cut(s)	175
AvaII	GGWCC	1 cut(s)	403
BalI	TGGCCA	1 cut(s)	19
BceAI	ACGGC	1 cut(s)	148
BcnI	CCSGG	3 cut(s)	127, 226, 247
BcoDI	GTCTC	1 cut(s)	30
BfaI	CTAG	2 cut(s)	296, 306
BfrI	CTTAAG	1 cut(s)	310
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	3 cut(s)	127, 226, 247
Bme18I	GGWCC	1 cut(s)	403
BmgT120I	GGNCC	1 cut(s)	403
BmrFI	CCNGG	3 cut(s)	127, 226, 247
BplI	GAGNNNNNCTC	2 cut(s)	41, 73
BpuMI	CCSGG	3 cut(s)	127, 226, 247
BsaJI	CCNNGG	1 cut(s)	126
BsaWI	WCCGGW	2 cut(s)	201, 405
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	1 cut(s)	246
BseAI	TCCGGA	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	126
BseLI	CCNNNNNNNGG	1 cut(s)	246
Bsh1236I	CGCG	1 cut(s)	7
Bsh1285I	CGRYCG	1 cut(s)	251
BshFI	GGCC	1 cut(s)	19
BsiEI	CGRYCG	1 cut(s)	251
BsiSI	CCGG	6 cut(s)	77, 126, 202, 226, 247, 406
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	246
BsmAI	GTCTC	1 cut(s)	30
BsmFI	GGGAC	1 cut(s)	143
BsmI	GAATGC	1 cut(s)	277
BsnI	GGCC	1 cut(s)	19
Bsp13I	TCCGGA	1 cut(s)	201
Bsp143I	GATC	2 cut(s)	333, 380
BspACI	CCGC	2 cut(s)	5, 147
BspANI	GGCC	1 cut(s)	19
BspEI	TCCGGA	1 cut(s)	201
BspFNI	CGCG	1 cut(s)	7
BspPI	GGATC	1 cut(s)	375
BspTI	CTTAAG	1 cut(s)	310
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	2 cut(s)	333, 380
Bst4CI	ACNGT	2 cut(s)	99, 119
BstAFI	CTTAAG	1 cut(s)	310
BstFNI	CGCG	1 cut(s)	7
BstKTI	GATC	2 cut(s)	336, 383
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	2 cut(s)	333, 380
BstMCI	CGRYCG	1 cut(s)	251
BstSCI	CCNGG	3 cut(s)	125, 224, 245
BstUI	CGCG	1 cut(s)	7
BstX2I	RGATCY	1 cut(s)	380
BstYI	RGATCY	1 cut(s)	380
BsuRI	GGCC	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	104
Cfr13I	GGNCC	1 cut(s)	403
CviAII	CATG	1 cut(s)	359
CviJI	RGCY	4 cut(s)	19, 233, 309, 363
CviKI_1	RGCY	4 cut(s)	19, 233, 309, 363
DpnI	GATC	2 cut(s)	335, 382
DpnII	GATC	2 cut(s)	333, 380
EaeI	YGGCCR	1 cut(s)	17
EciI	GGCGGA	1 cut(s)	162
Eco47I	GGWCC	1 cut(s)	403
FaeI	CATG	1 cut(s)	362
FaiI	YATR	8 cut(s)	85, 174, 237, 271, 288, 360, 395, 397
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	1 cut(s)	358
FauNDI	CATATG	1 cut(s)	395
Fnu4HI	GCNGC	1 cut(s)	5
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	2 cut(s)	296, 306
GluI	GCNGC	1 cut(s)	5
HaeIII	GGCC	1 cut(s)	19
HapII	CCGG	6 cut(s)	77, 126, 202, 226, 247, 406
Hin1II	CATG	1 cut(s)	362
HincII	GTYRAC	1 cut(s)	11
HindII	GTYRAC	1 cut(s)	11
HinfI	GANTC	3 cut(s)	105, 255, 390
HpaII	CCGG	6 cut(s)	77, 126, 202, 226, 247, 406
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	2 cut(s)	11, 89
Hpy188I	TCNGA	1 cut(s)	215
Hpy188III	TCNNGA	3 cut(s)	58, 202, 252
Hpy8I	GTNNAC	2 cut(s)	11, 89
Hpy99I	CGWCG	1 cut(s)	64
HpyAV	CCTTC	1 cut(s)	394
HpyCH4III	ACNGT	2 cut(s)	99, 119
Hsp92II	CATG	1 cut(s)	362
Kpn2I	TCCGGA	1 cut(s)	201
Kzo9I	GATC	2 cut(s)	333, 380
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	6 cut(s)	90, 122, 139, 215, 239, 260
MaeI	CTAG	2 cut(s)	296, 306
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	2 cut(s)	335, 382
MboI	GATC	2 cut(s)	333, 380
MboII	GAAGA	2 cut(s)	199, 339
MfeI	CAATTG	1 cut(s)	342
MflI	RGATCY	1 cut(s)	380
MlsI	TGGCCA	1 cut(s)	19
MluCI	AATT	3 cut(s)	66, 342, 348
MluNI	TGGCCA	1 cut(s)	19
MlyI	GAGTC	1 cut(s)	384
MnlI	CCTC	5 cut(s)	154, 162, 198, 232, 346
Mox20I	TGGCCA	1 cut(s)	19
MroI	TCCGGA	1 cut(s)	201
MscI	TGGCCA	1 cut(s)	19
MseI	TTAA	2 cut(s)	311, 338
MslI	CAYNNNNRTG	1 cut(s)	97
Msp20I	TGGCCA	1 cut(s)	19
MspCI	CTTAAG	1 cut(s)	310
MspI	CCGG	6 cut(s)	77, 126, 202, 226, 247, 406
MspR9I	CCNGG	3 cut(s)	127, 226, 247
MunI	CAATTG	1 cut(s)	342
Mva1269I	GAATGC	1 cut(s)	277
MvnI	CGCG	1 cut(s)	7
NciI	CCSGG	3 cut(s)	127, 226, 247
NdeI	CATATG	1 cut(s)	395
NdeII	GATC	2 cut(s)	333, 380
NlaIII	CATG	1 cut(s)	362
OliI	CACNNNNGTG	1 cut(s)	97
PctI	GAATGC	1 cut(s)	277
PfeI	GAWTC	2 cut(s)	105, 255
PfoI	TCCNGGA	1 cut(s)	224
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	1 cut(s)	384
PpsI	GAGTC	1 cut(s)	384
PspPI	GGNCC	1 cut(s)	403
PsuI	RGATCY	1 cut(s)	380
RseI	CAYNNNNRTG	1 cut(s)	97
SaqAI	TTAA	2 cut(s)	311, 338
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	2 cut(s)	333, 380
Sau96I	GGNCC	1 cut(s)	403
SchI	GAGTC	1 cut(s)	384
ScrFI	CCNGG	3 cut(s)	127, 226, 247
SetI	ASST	5 cut(s)	165, 173, 311, 357, 405
SinI	GGWCC	1 cut(s)	403
SmiMI	CAYNNNNRTG	1 cut(s)	97
SmlI	CTYRAG	1 cut(s)	310
SmoI	CTYRAG	1 cut(s)	310
Sse9I	AATT	3 cut(s)	66, 342, 348
SsiI	CCGC	2 cut(s)	5, 147
SspMI	CTAG	2 cut(s)	296, 306
StyD4I	CCNGG	3 cut(s)	125, 224, 245
TaaI	ACNGT	2 cut(s)	99, 119
TaqI	TCGA	2 cut(s)	59, 251
TasI	AATT	3 cut(s)	66, 342, 348
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	2 cut(s)	105, 255
Tru1I	TTAA	2 cut(s)	311, 338
Tru9I	TTAA	2 cut(s)	311, 338
TscAI	CASTG	1 cut(s)	104
TspDTI	ATGAA	2 cut(s)	59, 347
TspGWI	ACGGA	1 cut(s)	77
TspRI	CASTG	1 cut(s)	104
Vha464I	CTTAAG	1 cut(s)	310
VpaK11BI	GGWCC	1 cut(s)	403
XapI	RAATTY	1 cut(s)	66
XspI	CTAG	2 cut(s)	296, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.