Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005514.1

Orthogroup ID

OG0025540

Physical Location & Seq

Genomic Coordinates Forward (+)

106469 .. 107282

Gene Structure 814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005514.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atgcaaatggagcagctactaagcatgggcttccccaacgacctcgccaccgaagcctttgccgccaccggcggcaactcagctctcaaaaccaccgattggattctcaaccgcaattcctccaccaccacctccactcccaccgccacctctcaacctaaactcgatcgcttttttctctcccaatccacaaattcacaatcccaagacaaacaagaaccagaagaacaacagtccaccccaacctcccaactccccaagcgccgcaaacttctagtcccggaaaccccgccgcccactacctcgaataaaactgcaaccaccacggcccactaccagcccttgtcggagcgcatgcggcccaggaccctaaacgacgtcgtcggccaagactttctcttgctcctctctgatctcctctctataggtgaggaggaggctttctcggcaatcggctcaggcaccggccgtgtggatcgagtcaatgtccaccttgaaactctaggcaaatggccgatcgacgactctagtctttccaccacgacctccacgtcccctgctgcaactcggatcgcttcggtcgcctcccctacaaagacatatcggaatcgagattgggctggactgattcgtgaaggtaagaatctgaggagttgtaaagattcggactttgttggatttgatcaatttggtttagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010556 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030174 GO:0031323 GO:0031326 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901362 GO:1901576 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc_2 MgsA_C UBA

Protein Analysis

233

Amino Acids

25.47

Weight (kDa)

5.77

Isoelectric Point (pI)

51.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025540)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002631.1_g000002 Rmu_sc0005514.1_g000026 Rmu_sc0007061.1_g000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	550
AatII	GACGTC	1 cut(s)	381
AccB1I	GGYRCC	1 cut(s)	461
AccB7I	CCANNNNNTGG	1 cut(s)	99
AciI	CCGC	8 cut(s)	63, 72, 112, 144, 265, 290, 293, 358
AclWI	GGATC	2 cut(s)	483, 578
AcoI	YGGCCR	3 cut(s)	385, 466, 512
AcsI	RAATTY	1 cut(s)	193
AcyI	GRCGYC	1 cut(s)	378
AfiI	CCNNNNNNNGG	1 cut(s)	99
AgsI	TTSAA	1 cut(s)	497
AjiI	CACGTC	1 cut(s)	552
AjnI	CCWGG	1 cut(s)	362
AluBI	AGCT	3 cut(s)	16, 83, 698
AluI	AGCT	3 cut(s)	16, 83, 698
AlwI	GGATC	2 cut(s)	483, 578
AoxI	GGCC	5 cut(s)	327, 359, 385, 466, 512
ApeKI	GCWGC	2 cut(s)	13, 560
ApoI	RAATTY	1 cut(s)	193
ArsI	GACNNNNNNTTYG	2 cut(s)	261, 293
AspLEI	GCGC	2 cut(s)	264, 354
AspS9I	GGNCC	3 cut(s)	328, 360, 366
AsuC2I	CCSGG	1 cut(s)	281
AsuHPI	GGTGA	1 cut(s)	440
AvaII	GGWCC	1 cut(s)	366
BanI	GGYRCC	1 cut(s)	461
BbvI	GCAGC	2 cut(s)	25, 547
BceAI	ACGGC	2 cut(s)	342, 453
BcgI	CGANNNNNNTGC	2 cut(s)	41, 75
BciT130I	CCWGG	1 cut(s)	364
BclI	TGATCA	1 cut(s)	682
BcnI	CCSGG	1 cut(s)	281
BfaI	CTAG	3 cut(s)	275, 503, 528
BfmI	CTRYAG	1 cut(s)	423
BfoI	RGCGCY	1 cut(s)	265
BisI	GCNGC	7 cut(s)	14, 63, 73, 265, 293, 359, 561
BlsI	GCNGC	7 cut(s)	15, 64, 74, 266, 294, 360, 562
Bme1390I	CCNGG	2 cut(s)	281, 364
Bme18I	GGWCC	1 cut(s)	366
BmgBI	CACGTC	1 cut(s)	552
BmgT120I	GGNCC	3 cut(s)	328, 360, 366
BmiI	GGNNCC	2 cut(s)	368, 463
BmrFI	CCNGG	2 cut(s)	281, 364
BoxI	GACNNNNGTC	1 cut(s)	528
BplI	GAGNNNNNCTC	2 cut(s)	428, 460
Bpu10I	CCTNAGC	1 cut(s)	457
BpuMI	CCSGG	1 cut(s)	281
BsaHI	GRCGYC	1 cut(s)	378
BsaJI	CCNNGG	2 cut(s)	324, 362
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bsc4I	CCNNNNNNNGG	1 cut(s)	99
Bse118I	RCCGGY	2 cut(s)	68, 464
BseBI	CCWGG	1 cut(s)	364
BseDI	CCNNGG	2 cut(s)	324, 362
BseLI	CCNNNNNNNGG	1 cut(s)	99
BseMII	CTCAG	3 cut(s)	93, 471, 638
BseRI	GAGGAG	5 cut(s)	395, 407, 446, 449, 664
BseX3I	CGGCCG	1 cut(s)	466
BseXI	GCAGC	2 cut(s)	25, 547
Bsh1285I	CGRYCG	4 cut(s)	169, 469, 519, 582
BshFI	GGCC	5 cut(s)	329, 361, 387, 468, 514
BshNI	GGYRCC	1 cut(s)	461
BsiEI	CGRYCG	4 cut(s)	169, 469, 519, 582
BsiSI	CCGG	3 cut(s)	69, 281, 465
BslFI	GGGAC	2 cut(s)	263, 538
BslI	CCNNNNNNNGG	1 cut(s)	99
BsmFI	GGGAC	2 cut(s)	263, 538
BsnI	GGCC	5 cut(s)	329, 361, 387, 468, 514
Bsp143I	GATC	6 cut(s)	166, 412, 475, 516, 570, 682
BspACI	CCGC	8 cut(s)	63, 72, 112, 144, 265, 290, 293, 358
BspANI	GGCC	5 cut(s)	329, 361, 387, 468, 514
BspCNI	CTCAG	3 cut(s)	92, 470, 639
BspLI	GGNNCC	2 cut(s)	368, 463
BspPI	GGATC	2 cut(s)	483, 578
BspT107I	GGYRCC	1 cut(s)	461
BsrFI	RCCGGY	2 cut(s)	68, 464
BssAI	RCCGGY	2 cut(s)	68, 464
BssECI	CCNNGG	2 cut(s)	324, 362
BssMI	GATC	6 cut(s)	166, 412, 475, 516, 570, 682
BssNI	GRCGYC	1 cut(s)	378
Bst2UI	CCWGG	1 cut(s)	364
Bst4CI	ACNGT	1 cut(s)	234
BstACI	GRCGYC	1 cut(s)	378
BstC8I	GCNNGC	1 cut(s)	356
BstDEI	CTNAG	4 cut(s)	20, 79, 457, 647
BstDSI	CCRYGG	1 cut(s)	324
BstH2I	RGCGCY	1 cut(s)	265
BstHHI	GCGC	2 cut(s)	264, 354
BstKTI	GATC	6 cut(s)	169, 415, 478, 519, 573, 685
BstMBI	GATC	6 cut(s)	166, 412, 475, 516, 570, 682
BstMCI	CGRYCG	4 cut(s)	169, 469, 519, 582
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 53, 62, 358, 446, 581
BstNI	CCWGG	1 cut(s)	364
BstNSI	RCATGY	1 cut(s)	358
BstPAI	GACNNNNGTC	1 cut(s)	528
BstSCI	CCNGG	2 cut(s)	279, 362
BstSFI	CTRYAG	1 cut(s)	423
BstV1I	GCAGC	2 cut(s)	25, 547
BstZI	CGGCCG	1 cut(s)	466
BsuRI	GGCC	5 cut(s)	329, 361, 387, 468, 514
BtgI	CCRYGG	1 cut(s)	324
BtrI	CACGTC	1 cut(s)	552
Cac8I	GCNNGC	1 cut(s)	356
CfoI	GCGC	2 cut(s)	264, 354
Cfr10I	RCCGGY	2 cut(s)	68, 464
Cfr13I	GGNCC	3 cut(s)	328, 360, 366
CviAII	CATG	2 cut(s)	25, 355
DdeI	CTNAG	4 cut(s)	20, 79, 457, 647
DpnI	GATC	6 cut(s)	168, 414, 477, 518, 572, 684
DpnII	GATC	6 cut(s)	166, 412, 475, 516, 570, 682
DrdI	GACNNNNNNGTC	1 cut(s)	550
DseDI	GACNNNNNNGTC	1 cut(s)	550
EaeI	YGGCCR	3 cut(s)	385, 466, 512
EagI	CGGCCG	1 cut(s)	466
EclXI	CGGCCG	1 cut(s)	466
Eco47I	GGWCC	1 cut(s)	366
Eco52I	CGGCCG	1 cut(s)	466
EcoO109I	RGGNCCY	1 cut(s)	366
EcoRII	CCWGG	1 cut(s)	362
FaeI	CATG	2 cut(s)	28, 358
FaiI	YATR	4 cut(s)	26, 356, 425, 601
FaqI	GGGAC	2 cut(s)	263, 538
FatI	CATG	2 cut(s)	24, 354
FauI	CCCGC	1 cut(s)	297
FbaI	TGATCA	1 cut(s)	682
Fnu4HI	GCNGC	7 cut(s)	14, 63, 73, 265, 293, 359, 561
Fsp4HI	GCNGC	7 cut(s)	14, 63, 73, 265, 293, 359, 561
FspBI	CTAG	3 cut(s)	275, 503, 528
GlaI	GCGC	2 cut(s)	263, 353
GluI	GCNGC	7 cut(s)	14, 63, 73, 265, 293, 359, 561
HaeII	RGCGCY	1 cut(s)	265
HaeIII	GGCC	5 cut(s)	329, 361, 387, 468, 514
HapII	CCGG	3 cut(s)	69, 281, 465
HhaI	GCGC	2 cut(s)	264, 354
Hin1I	GRCGYC	1 cut(s)	378
Hin1II	CATG	2 cut(s)	28, 358
Hin6I	GCGC	2 cut(s)	262, 352
HinP1I	GCGC	2 cut(s)	262, 352
HinfI	GANTC	7 cut(s)	103, 480, 524, 607, 628, 643, 662
HpaII	CCGG	3 cut(s)	69, 281, 465
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	2 cut(s)	237, 490
Hpy188I	TCNGA	6 cut(s)	349, 412, 570, 606, 648, 667
Hpy188III	TCNNGA	2 cut(s)	611, 632
Hpy8I	GTNNAC	2 cut(s)	237, 490
Hpy99I	CGWCG	4 cut(s)	380, 383, 386, 524
HpyAV	CCTTC	1 cut(s)	629
HpyCH4III	ACNGT	1 cut(s)	234
HpyCH4IV	ACGT	2 cut(s)	378, 551
HpyCH4V	TGCA	3 cut(s)	4, 317, 563
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 53, 62, 358, 446, 581
HpyF3I	CTNAG	4 cut(s)	20, 79, 457, 647
HpySE526I	ACGT	2 cut(s)	378, 551
Hsp92I	GRCGYC	1 cut(s)	378
Hsp92II	CATG	2 cut(s)	28, 358
HspAI	GCGC	2 cut(s)	262, 352
Ksp22I	TGATCA	1 cut(s)	682
Kzo9I	GATC	6 cut(s)	166, 412, 475, 516, 570, 682
LmnI	GCTCC	3 cut(s)	10, 349, 408
Lsp1109I	GCAGC	2 cut(s)	25, 547
MaeI	CTAG	3 cut(s)	275, 503, 528
MaeII	ACGT	2 cut(s)	378, 551
MalI	GATC	6 cut(s)	168, 414, 477, 518, 572, 684
MboI	GATC	6 cut(s)	166, 412, 475, 516, 570, 682
MboII	GAAGA	1 cut(s)	236
MluCI	AATT	3 cut(s)	115, 193, 686
MlyI	GAGTC	2 cut(s)	489, 518
MmeI	TCCRAC	2 cut(s)	327, 655
MspI	CCGG	3 cut(s)	69, 281, 465
MspR9I	CCNGG	2 cut(s)	281, 364
MvaI	CCWGG	1 cut(s)	364
MwoI	GCNNNNNNNGC	6 cut(s)	10, 53, 62, 358, 446, 581
NciI	CCSGG	1 cut(s)	281
NdeII	GATC	6 cut(s)	166, 412, 475, 516, 570, 682
NlaIII	CATG	2 cut(s)	28, 358
NlaIV	GGNNCC	2 cut(s)	368, 463
NmeAIII	GCCGAG	1 cut(s)	425
NspI	RCATGY	1 cut(s)	358
PaeI	GCATGC	1 cut(s)	358
PcsI	WCGNNNNNNNCGW	1 cut(s)	548
PfeI	GAWTC	5 cut(s)	103, 607, 628, 643, 662
PflFI	GACNNNGTC	1 cut(s)	380
PflMI	CCANNNNNTGG	1 cut(s)	99
PfoI	TCCNGGA	1 cut(s)	279
PkrI	GCNGC	7 cut(s)	15, 64, 74, 266, 294, 360, 562
Ple19I	CGATCG	2 cut(s)	169, 519
PleI	GAGTC	2 cut(s)	488, 518
PpsI	GAGTC	2 cut(s)	488, 518
PpuMI	RGGWCCY	1 cut(s)	366
PshAI	GACNNNNGTC	1 cut(s)	528
Psp5II	RGGWCCY	1 cut(s)	366
Psp6I	CCWGG	1 cut(s)	362
PspGI	CCWGG	1 cut(s)	362
PspN4I	GGNNCC	2 cut(s)	368, 463
PspPI	GGNCC	3 cut(s)	328, 360, 366
PspPPI	RGGWCCY	1 cut(s)	366
PsyI	GACNNNGTC	1 cut(s)	380
PvuI	CGATCG	2 cut(s)	169, 519
SatI	GCNGC	7 cut(s)	14, 63, 73, 265, 293, 359, 561
Sau3AI	GATC	6 cut(s)	166, 412, 475, 516, 570, 682
Sau96I	GGNCC	3 cut(s)	328, 360, 366
SchI	GAGTC	2 cut(s)	489, 518
ScrFI	CCNGG	2 cut(s)	281, 364
SfcI	CTRYAG	1 cut(s)	423
SgrAI	CRCCGGYG	1 cut(s)	68
SinI	GGWCC	1 cut(s)	366
SphI	GCATGC	1 cut(s)	358
Sse9I	AATT	3 cut(s)	115, 193, 686
SsiI	CCGC	8 cut(s)	63, 72, 112, 144, 265, 290, 293, 358
SspMI	CTAG	3 cut(s)	275, 503, 528
StyD4I	CCNGG	2 cut(s)	279, 362
TaaI	ACNGT	1 cut(s)	234
TaiI	ACGT	2 cut(s)	381, 554
TaqI	TCGA	5 cut(s)	165, 305, 478, 519, 610
TaqII	GACCGA	1 cut(s)	568
TasI	AATT	3 cut(s)	115, 193, 686
TauI	GCSGC	5 cut(s)	65, 75, 267, 295, 361
TfiI	GAWTC	5 cut(s)	103, 607, 628, 643, 662
TseI	GCWGC	2 cut(s)	13, 560
Tth111I	GACNNNGTC	1 cut(s)	380
Van91I	CCANNNNNTGG	1 cut(s)	99
VpaK11BI	GGWCC	1 cut(s)	366
XapI	RAATTY	1 cut(s)	193
XceI	RCATGY	1 cut(s)	358
XspI	CTAG	3 cut(s)	275, 503, 528
ZraI	GACGTC	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.