Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007061.1

Orthogroup ID

OG0025540

Physical Location & Seq

Genomic Coordinates Reverse (-)

54624 .. 55463

Gene Structure 840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007061.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

atgcaaatggagcagctactaagcatgggcttccccaacgacctcgccaccgaagccttcgccgccatcggcggcaactcagctctcaaaaccaccgattggattctcaaccgcaattcctccaccaccacctccactcccaccgccacctctcaacctaaactcgatcgcttttttctctcccaatccacaaattcacaatcccaagacaaacaagaaccagaagaacaacagtccaccccaacctcccaactccccaagcgccgcaaacttctcgtcccggaaaccccgccgcccactacctcgaataaacctgcaaccaccacagcccactaccagcccttgtcggagcgcatgcggcccaggaccctaaacgacgtcgtcggccaagactttctcttgctcctctctgatctcctctctgtaattcaacctcattactctttgattcgacctcttcaagctcaacaccaaaaccaacaacatccacattgtgaggaggaggctttctcggcaatcggctcaggcaccggccgtgtggatcgagtcaatgtcctccttgaaactctaggcaaatggccgatcggcgactctagtctttccaccacgacctccacgtcccccgctgcaactcggatcgcttcggtcgcctcccctacaaagacatatcggaatcgagattgggctggactgattcgtgaaggtaagaatctgaggagttgtaaagattcggactttgttggatttgatcaatttggtttagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000731 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010556 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030174 GO:0031323 GO:0031326 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901362 GO:1901576 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc_2 MgsA_C UBA

Protein Analysis

255

Amino Acids

28.08

Weight (kDa)

6.97

Isoelectric Point (pI)

54.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025540)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002631.1_g000002 Rmu_sc0005514.1_g000026 Rmu_sc0007061.1_g000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	616
AatII	GACGTC	1 cut(s)	381
Acc36I	ACCTGC	1 cut(s)	322
AccB1I	GGYRCC	1 cut(s)	527
AccB7I	CCANNNNNTGG	1 cut(s)	99
AciI	CCGC	9 cut(s)	63, 72, 112, 144, 265, 290, 293, 358, 624
AclWI	GGATC	2 cut(s)	549, 644
AcoI	YGGCCR	3 cut(s)	385, 532, 578
AcsI	RAATTY	1 cut(s)	193
AcyI	GRCGYC	1 cut(s)	378
AdeI	CACNNNGTG	1 cut(s)	494
AfiI	CCNNNNNNNGG	1 cut(s)	99
AgsI	TTSAA	3 cut(s)	431, 461, 563
AjiI	CACGTC	1 cut(s)	618
AjnI	CCWGG	1 cut(s)	362
AluBI	AGCT	4 cut(s)	16, 83, 464, 764
AluI	AGCT	4 cut(s)	16, 83, 464, 764
AlwI	GGATC	2 cut(s)	549, 644
AoxI	GGCC	4 cut(s)	359, 385, 532, 578
ApeKI	GCWGC	2 cut(s)	13, 626
ApoI	RAATTY	1 cut(s)	193
ArsI	GACNNNNNNTTYG	2 cut(s)	261, 293
AspLEI	GCGC	2 cut(s)	264, 354
AspS9I	GGNCC	2 cut(s)	360, 366
AsuC2I	CCSGG	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	366
BanI	GGYRCC	1 cut(s)	527
BbvI	GCAGC	2 cut(s)	25, 613
BccI	CCATC	1 cut(s)	74
BceAI	ACGGC	1 cut(s)	519
BcgI	CGANNNNNNTGC	2 cut(s)	256, 290
BciT130I	CCWGG	1 cut(s)	364
BclI	TGATCA	1 cut(s)	748
BcnI	CCSGG	1 cut(s)	281
BfaI	CTAG	2 cut(s)	569, 594
BfoI	RGCGCY	1 cut(s)	265
BfuAI	ACCTGC	1 cut(s)	322
BisI	GCNGC	7 cut(s)	14, 63, 73, 265, 293, 359, 627
BlsI	GCNGC	7 cut(s)	15, 64, 74, 266, 294, 360, 628
Bme1390I	CCNGG	2 cut(s)	281, 364
Bme18I	GGWCC	1 cut(s)	366
BmgBI	CACGTC	1 cut(s)	618
BmgT120I	GGNCC	2 cut(s)	360, 366
BmiI	GGNNCC	2 cut(s)	368, 529
BmrFI	CCNGG	2 cut(s)	281, 364
BoxI	GACNNNNGTC	1 cut(s)	594
BplI	GAGNNNNNCTC	2 cut(s)	494, 526
Bpu10I	CCTNAGC	1 cut(s)	523
BpuMI	CCSGG	1 cut(s)	281
BsaHI	GRCGYC	1 cut(s)	378
BsaJI	CCNNGG	1 cut(s)	362
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bsc4I	CCNNNNNNNGG	1 cut(s)	99
Bse118I	RCCGGY	1 cut(s)	530
BseBI	CCWGG	1 cut(s)	364
BseDI	CCNNGG	1 cut(s)	362
BseGI	GGATG	1 cut(s)	484
BseLI	CCNNNNNNNGG	1 cut(s)	99
BseMII	CTCAG	3 cut(s)	93, 537, 704
BseRI	GAGGAG	5 cut(s)	395, 407, 512, 515, 730
BseX3I	CGGCCG	1 cut(s)	532
BseXI	GCAGC	2 cut(s)	25, 613
Bsh1285I	CGRYCG	4 cut(s)	169, 535, 585, 648
BshFI	GGCC	4 cut(s)	361, 387, 534, 580
BshNI	GGYRCC	1 cut(s)	527
BsiEI	CGRYCG	4 cut(s)	169, 535, 585, 648
BsiSI	CCGG	2 cut(s)	281, 531
BslFI	GGGAC	2 cut(s)	263, 604
BslI	CCNNNNNNNGG	1 cut(s)	99
BsmFI	GGGAC	2 cut(s)	263, 604
BsnI	GGCC	4 cut(s)	361, 387, 534, 580
Bsp143I	GATC	6 cut(s)	166, 412, 541, 582, 636, 748
BspACI	CCGC	9 cut(s)	63, 72, 112, 144, 265, 290, 293, 358, 624
BspANI	GGCC	4 cut(s)	361, 387, 534, 580
BspCNI	CTCAG	3 cut(s)	92, 536, 705
BspLI	GGNNCC	2 cut(s)	368, 529
BspMI	ACCTGC	1 cut(s)	322
BspPI	GGATC	2 cut(s)	549, 644
BspT107I	GGYRCC	1 cut(s)	527
BsrFI	RCCGGY	1 cut(s)	530
BssAI	RCCGGY	1 cut(s)	530
BssECI	CCNNGG	1 cut(s)	362
BssMI	GATC	6 cut(s)	166, 412, 541, 582, 636, 748
BssNI	GRCGYC	1 cut(s)	378
Bst2UI	CCWGG	1 cut(s)	364
Bst4CI	ACNGT	1 cut(s)	234
Bst6I	CTCTTC	1 cut(s)	462
BstACI	GRCGYC	1 cut(s)	378
BstC8I	GCNNGC	1 cut(s)	356
BstDEI	CTNAG	4 cut(s)	20, 79, 523, 713
BstF5I	GGATG	1 cut(s)	484
BstH2I	RGCGCY	1 cut(s)	265
BstHHI	GCGC	2 cut(s)	264, 354
BstKTI	GATC	6 cut(s)	169, 415, 544, 585, 639, 751
BstMBI	GATC	6 cut(s)	166, 412, 541, 582, 636, 748
BstMCI	CGRYCG	4 cut(s)	169, 535, 585, 648
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 53, 62, 358, 512, 647
BstNI	CCWGG	1 cut(s)	364
BstNSI	RCATGY	1 cut(s)	358
BstPAI	GACNNNNGTC	1 cut(s)	594
BstSCI	CCNGG	2 cut(s)	279, 362
BstV1I	GCAGC	2 cut(s)	25, 613
BstZI	CGGCCG	1 cut(s)	532
BsuRI	GGCC	4 cut(s)	361, 387, 534, 580
BtrI	CACGTC	1 cut(s)	618
BtsCI	GGATG	1 cut(s)	484
BveI	ACCTGC	1 cut(s)	322
Cac8I	GCNNGC	1 cut(s)	356
CfoI	GCGC	2 cut(s)	264, 354
Cfr10I	RCCGGY	1 cut(s)	530
Cfr13I	GGNCC	2 cut(s)	360, 366
CviAII	CATG	2 cut(s)	25, 355
DdeI	CTNAG	4 cut(s)	20, 79, 523, 713
DpnI	GATC	6 cut(s)	168, 414, 543, 584, 638, 750
DpnII	GATC	6 cut(s)	166, 412, 541, 582, 636, 748
DraIII	CACNNNGTG	1 cut(s)	494
DrdI	GACNNNNNNGTC	1 cut(s)	616
DseDI	GACNNNNNNGTC	1 cut(s)	616
EaeI	YGGCCR	3 cut(s)	385, 532, 578
EagI	CGGCCG	1 cut(s)	532
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
EclXI	CGGCCG	1 cut(s)	532
Eco47I	GGWCC	1 cut(s)	366
Eco52I	CGGCCG	1 cut(s)	532
EcoO109I	RGGNCCY	1 cut(s)	366
EcoRII	CCWGG	1 cut(s)	362
FaeI	CATG	2 cut(s)	28, 358
FaiI	YATR	3 cut(s)	26, 356, 667
FaqI	GGGAC	2 cut(s)	263, 604
FatI	CATG	2 cut(s)	24, 354
FauI	CCCGC	2 cut(s)	297, 631
FbaI	TGATCA	1 cut(s)	748
Fnu4HI	GCNGC	7 cut(s)	14, 63, 73, 265, 293, 359, 627
FokI	GGATG	1 cut(s)	471
Fsp4HI	GCNGC	7 cut(s)	14, 63, 73, 265, 293, 359, 627
FspBI	CTAG	2 cut(s)	569, 594
GlaI	GCGC	2 cut(s)	263, 353
GluI	GCNGC	7 cut(s)	14, 63, 73, 265, 293, 359, 627
HaeII	RGCGCY	1 cut(s)	265
HaeIII	GGCC	4 cut(s)	361, 387, 534, 580
HapII	CCGG	2 cut(s)	281, 531
HhaI	GCGC	2 cut(s)	264, 354
Hin1I	GRCGYC	1 cut(s)	378
Hin1II	CATG	2 cut(s)	28, 358
Hin6I	GCGC	2 cut(s)	262, 352
HinP1I	GCGC	2 cut(s)	262, 352
HinfI	GANTC	8 cut(s)	103, 448, 546, 590, 673, 694, 709, 728
HpaII	CCGG	2 cut(s)	281, 531
Hpy166II	GTNNAC	1 cut(s)	237
Hpy188I	TCNGA	6 cut(s)	349, 412, 636, 672, 714, 733
Hpy188III	TCNNGA	2 cut(s)	677, 698
Hpy8I	GTNNAC	1 cut(s)	237
Hpy99I	CGWCG	3 cut(s)	380, 383, 386
HpyAV	CCTTC	2 cut(s)	67, 695
HpyCH4III	ACNGT	1 cut(s)	234
HpyCH4IV	ACGT	2 cut(s)	378, 617
HpyCH4V	TGCA	3 cut(s)	4, 317, 629
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 53, 62, 358, 512, 647
HpyF3I	CTNAG	4 cut(s)	20, 79, 523, 713
HpySE526I	ACGT	2 cut(s)	378, 617
Hsp92I	GRCGYC	1 cut(s)	378
Hsp92II	CATG	2 cut(s)	28, 358
HspAI	GCGC	2 cut(s)	262, 352
Ksp22I	TGATCA	1 cut(s)	748
Kzo9I	GATC	6 cut(s)	166, 412, 541, 582, 636, 748
LmnI	GCTCC	3 cut(s)	10, 349, 408
LpnPI	CCDG	9 cut(s)	234, 294, 327, 349, 350, 376, 510, 544, 672
Lsp1109I	GCAGC	2 cut(s)	25, 613
MaeI	CTAG	2 cut(s)	569, 594
MaeII	ACGT	2 cut(s)	378, 617
MalI	GATC	6 cut(s)	168, 414, 543, 584, 638, 750
MboI	GATC	6 cut(s)	166, 412, 541, 582, 636, 748
MboII	GAAGA	2 cut(s)	236, 449
MluCI	AATT	4 cut(s)	115, 193, 426, 752
MlyI	GAGTC	2 cut(s)	555, 584
MmeI	TCCRAC	2 cut(s)	327, 721
MspA1I	CMGCKG	1 cut(s)	626
MspI	CCGG	2 cut(s)	281, 531
MspR9I	CCNGG	2 cut(s)	281, 364
MvaI	CCWGG	1 cut(s)	364
MwoI	GCNNNNNNNGC	6 cut(s)	10, 53, 62, 358, 512, 647
NciI	CCSGG	1 cut(s)	281
NdeII	GATC	6 cut(s)	166, 412, 541, 582, 636, 748
NlaIII	CATG	2 cut(s)	28, 358
NlaIV	GGNNCC	2 cut(s)	368, 529
NmeAIII	GCCGAG	1 cut(s)	491
NspI	RCATGY	1 cut(s)	358
PaeI	GCATGC	1 cut(s)	358
PcsI	WCGNNNNNNNCGW	1 cut(s)	614
PfeI	GAWTC	6 cut(s)	103, 448, 673, 694, 709, 728
PflFI	GACNNNGTC	1 cut(s)	380
PflMI	CCANNNNNTGG	1 cut(s)	99
PfoI	TCCNGGA	1 cut(s)	279
PkrI	GCNGC	7 cut(s)	15, 64, 74, 266, 294, 360, 628
Ple19I	CGATCG	2 cut(s)	169, 585
PleI	GAGTC	2 cut(s)	554, 584
PpsI	GAGTC	2 cut(s)	554, 584
PpuMI	RGGWCCY	1 cut(s)	366
PshAI	GACNNNNGTC	1 cut(s)	594
Psp5II	RGGWCCY	1 cut(s)	366
Psp6I	CCWGG	1 cut(s)	362
PspGI	CCWGG	1 cut(s)	362
PspN4I	GGNNCC	2 cut(s)	368, 529
PspPI	GGNCC	2 cut(s)	360, 366
PspPPI	RGGWCCY	1 cut(s)	366
PsyI	GACNNNGTC	1 cut(s)	380
PvuI	CGATCG	2 cut(s)	169, 585
SatI	GCNGC	7 cut(s)	14, 63, 73, 265, 293, 359, 627
Sau3AI	GATC	6 cut(s)	166, 412, 541, 582, 636, 748
Sau96I	GGNCC	2 cut(s)	360, 366
SchI	GAGTC	2 cut(s)	555, 584
ScrFI	CCNGG	2 cut(s)	281, 364
SinI	GGWCC	1 cut(s)	366
SphI	GCATGC	1 cut(s)	358
Sse9I	AATT	4 cut(s)	115, 193, 426, 752
SsiI	CCGC	9 cut(s)	63, 72, 112, 144, 265, 290, 293, 358, 624
SspMI	CTAG	2 cut(s)	569, 594
StyD4I	CCNGG	2 cut(s)	279, 362
TaaI	ACNGT	1 cut(s)	234
TaiI	ACGT	2 cut(s)	381, 620
TaqI	TCGA	5 cut(s)	165, 305, 451, 544, 676
TaqII	GACCGA	1 cut(s)	634
TasI	AATT	4 cut(s)	115, 193, 426, 752
TauI	GCSGC	5 cut(s)	65, 75, 267, 295, 361
TfiI	GAWTC	6 cut(s)	103, 448, 673, 694, 709, 728
TseI	GCWGC	2 cut(s)	13, 626
Tth111I	GACNNNGTC	1 cut(s)	380
Van91I	CCANNNNNTGG	1 cut(s)	99
VpaK11BI	GGWCC	1 cut(s)	366
XapI	RAATTY	1 cut(s)	193
XceI	RCATGY	1 cut(s)	358
XspI	CTAG	2 cut(s)	569, 594
ZraI	GACGTC	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.