Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005612.1

Orthogroup ID

OG0024616

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3106

Gene Structure 3106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 728 bp

atgggcagaccttctatggagaaaagcgaggacggatttacagttagagccaggctggttgtaaagtttcgagctttacaggaaattcgaggtttttggcacaattggaatttgggagccgcctctgtactattgaattggttgtttagtattgaattgctgcttgttttgagaaccgagccaaccaatgtgtccagggacttttggatgcccgatcacagctgtagggtatgctacgactgtgattcccagttcacagtatttaatcgaaggcatcattgccgcctttgtggccgagttttctgcgctaggtgtactgcaaacactattcctgccccatctgatgagccaagaattggtagggaagacggggagaggattagggtctgtaatttttgcttcaagcaatgggagcaagggatagcagcagttgataatgggccccctgaacctagccctggcctcagtccatcaccatctacaacaagcttggtcagtaccaacacaagctgcacctaccacagtagcagcagcactgttggttctaccccttattcgactggaccttaccagcacgtgccctatagttctggtcttagccccagacaatcttgccaagatgattcagttactggcctgcaagacaatgtaacatctcagaggagcattagttctgacgctgccatggcagagtcgtctcccaaccagtttggcttttgcatggacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000285 GO:0000322 GO:0000323 GO:0000324 GO:0000329 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005942 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006810 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0008289 GO:0009987 GO:0010008 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016301 GO:0016307 GO:0016310 GO:0016482 GO:0016740 GO:0016772 GO:0016773 GO:0019637 GO:0019898 GO:0030258 GO:0031090 GO:0031410 GO:0031982 GO:0032266 GO:0032991 GO:0035032 GO:0035091 GO:0042147 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061695 GO:0070772 GO:0071704 GO:0071840 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:0098852 GO:1901981 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00562 ko04070 ko04145 ko04810 map00562 map04070 map04145 map04810

Pfam Domains

Protein Families

Cpn60_TCP1 FYVE PIP5K

Protein Analysis

242

Amino Acids

26.89

Weight (kDa)

6.3

Isoelectric Point (pI)

66.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FYVE	PF01363	69 - 138	2e-18	FYVE zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024616)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g08160 pycom15g19920
rosa_multiflora	Rmu_sc0005612.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	356
AciI	CCGC	2 cut(s)	120, 283
AcoI	YGGCCR	1 cut(s)	292
AcsI	RAATTY	2 cut(s)	84, 109
AcvI	CACGTG	1 cut(s)	577
AfaI	GTAC	3 cut(s)	129, 316, 499
AfiI	CCNNNNNNNGG	2 cut(s)	356, 458
AgsI	TTSAA	3 cut(s)	136, 155, 403
AjnI	CCWGG	3 cut(s)	50, 194, 457
AloI	GAACNNNNNNTCC	2 cut(s)	655, 687
AluBI	AGCT	4 cut(s)	74, 222, 489, 510
AluI	AGCT	4 cut(s)	74, 222, 489, 510
Alw26I	GTCTC	1 cut(s)	702
AlwNI	CAGNNNCTG	1 cut(s)	632
AoxI	GGCC	4 cut(s)	292, 440, 460, 634
ApaI	GGGCCC	1 cut(s)	444
ApeKI	GCWGC	6 cut(s)	160, 425, 510, 528, 531, 680
ApoI	RAATTY	2 cut(s)	84, 109
AspLEI	GCGC	1 cut(s)	308
AspS9I	GGNCC	3 cut(s)	440, 441, 563
AsuHPI	GGTGA	1 cut(s)	465
AvaII	GGWCC	1 cut(s)	563
BaeGI	GKGCMC	2 cut(s)	444, 582
BanII	GRGCYC	1 cut(s)	444
BbrPI	CACGTG	1 cut(s)	577
BbsI	GAAGAC	1 cut(s)	372
BbvI	GCAGC	6 cut(s)	147, 437, 497, 540, 543, 667
BccI	CCATC	3 cut(s)	346, 478, 484
BcgI	CGANNNNNNTGC	2 cut(s)	285, 319
BciT130I	CCWGG	3 cut(s)	52, 196, 459
BcoDI	GTCTC	1 cut(s)	702
BfaI	CTAG	2 cut(s)	309, 453
BfmI	CTRYAG	2 cut(s)	223, 583
BglI	GCCNNNNNGGC	1 cut(s)	291
BisI	GCNGC	8 cut(s)	120, 161, 283, 426, 511, 529, 532, 681
BlsI	GCNGC	8 cut(s)	121, 162, 284, 427, 512, 530, 533, 682
Bme1390I	CCNGG	3 cut(s)	52, 196, 459
Bme18I	GGWCC	1 cut(s)	563
BmgT120I	GGNCC	3 cut(s)	440, 441, 563
BmiI	GGNNCC	3 cut(s)	118, 442, 443
BmrFI	CCNGG	3 cut(s)	52, 196, 459
BmrI	ACTGGG	1 cut(s)	244
BmsI	GCATC	2 cut(s)	198, 283
BmuI	ACTGGG	1 cut(s)	244
BpiI	GAAGAC	1 cut(s)	372
BsaAI	YACGTR	1 cut(s)	577
BsaJI	CCNNGG	3 cut(s)	195, 457, 684
BsaXI	ACNNNNNCTCC	2 cut(s)	655, 685
Bsc4I	CCNNNNNNNGG	2 cut(s)	356, 458
Bse1I	ACTGG	4 cut(s)	250, 565, 637, 706
Bse3DI	GCAATG	2 cut(s)	277, 413
BseBI	CCWGG	3 cut(s)	52, 196, 459
BseDI	CCNNGG	3 cut(s)	195, 457, 684
BseGI	GGATG	1 cut(s)	213
BseLI	CCNNNNNNNGG	2 cut(s)	356, 458
BseMI	GCAATG	2 cut(s)	277, 413
BseMII	CTCAG	2 cut(s)	478, 671
BseNI	ACTGG	4 cut(s)	250, 565, 637, 706
BseRI	GAGGAG	1 cut(s)	676
BseSI	GKGCMC	2 cut(s)	444, 582
BseXI	GCAGC	6 cut(s)	147, 437, 497, 540, 543, 667
BsgI	GTGCAG	1 cut(s)	496
BshFI	GGCC	4 cut(s)	294, 442, 462, 636
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	2 cut(s)	356, 458
BsmAI	GTCTC	1 cut(s)	702
BsmBI	CGTCTC	1 cut(s)	702
BsmFI	GGGAC	1 cut(s)	212
BsnI	GGCC	4 cut(s)	294, 442, 462, 636
Bsp120I	GGGCCC	1 cut(s)	440
Bsp1286I	GDGCHC	2 cut(s)	444, 582
Bsp143I	GATC	1 cut(s)	214
Bsp19I	CCATGG	1 cut(s)	684
BspACI	CCGC	2 cut(s)	120, 283
BspANI	GGCC	4 cut(s)	294, 442, 462, 636
BspCNI	CTCAG	2 cut(s)	477, 670
BspLI	GGNNCC	3 cut(s)	118, 442, 443
BsrDI	GCAATG	2 cut(s)	277, 413
BsrI	ACTGG	4 cut(s)	250, 565, 637, 706
BssECI	CCNNGG	3 cut(s)	195, 457, 684
BssMI	GATC	1 cut(s)	214
BssT1I	CCWWGG	1 cut(s)	684
Bst2UI	CCWGG	3 cut(s)	52, 196, 459
Bst4CI	ACNGT	5 cut(s)	43, 242, 259, 524, 538
BstBAI	YACGTR	1 cut(s)	577
BstC8I	GCNNGC	1 cut(s)	638
BstDEI	CTNAG	3 cut(s)	464, 596, 657
BstDSI	CCRYGG	1 cut(s)	684
BstF5I	GGATG	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	1 cut(s)	217
BstMAI	GTCTC	1 cut(s)	702
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	3 cut(s)	291, 412, 686
BstNI	CCWGG	3 cut(s)	52, 196, 459
BstSCI	CCNGG	3 cut(s)	50, 194, 457
BstSFI	CTRYAG	2 cut(s)	223, 583
BstSLI	GKGCMC	2 cut(s)	444, 582
BstV1I	GCAGC	6 cut(s)	147, 437, 497, 540, 543, 667
BstV2I	GAAGAC	1 cut(s)	372
BsuRI	GGCC	4 cut(s)	294, 442, 462, 636
BtgI	CCRYGG	1 cut(s)	684
BtsCI	GGATG	1 cut(s)	213
BtsIMutI	CAGTG	1 cut(s)	534
Cac8I	GCNNGC	1 cut(s)	638
CaiI	CAGNNNCTG	1 cut(s)	632
CfoI	GCGC	1 cut(s)	308
Cfr13I	GGNCC	3 cut(s)	440, 441, 563
CseI	GACGC	1 cut(s)	686
Csp6I	GTAC	3 cut(s)	128, 315, 498
CviAII	CATG	2 cut(s)	685, 721
CviQI	GTAC	3 cut(s)	128, 315, 498
DdeI	CTNAG	3 cut(s)	464, 596, 657
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
EaeI	YGGCCR	1 cut(s)	292
Eco130I	CCWWGG	1 cut(s)	684
Eco24I	GRGCYC	1 cut(s)	444
Eco47I	GGWCC	1 cut(s)	563
Eco72I	CACGTG	1 cut(s)	577
EcoO109I	RGGNCCY	1 cut(s)	441
EcoRII	CCWGG	3 cut(s)	50, 194, 457
EcoT14I	CCWWGG	1 cut(s)	684
EcoT38I	GRGCYC	1 cut(s)	444
ErhI	CCWWGG	1 cut(s)	684
Esp3I	CGTCTC	1 cut(s)	702
FaeI	CATG	2 cut(s)	688, 724
FaiI	YATR	5 cut(s)	17, 232, 585, 686, 722
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	2 cut(s)	684, 720
Fnu4HI	GCNGC	8 cut(s)	120, 161, 283, 426, 511, 529, 532, 681
FokI	GGATG	1 cut(s)	220
FriOI	GRGCYC	1 cut(s)	444
Fsp4HI	GCNGC	8 cut(s)	120, 161, 283, 426, 511, 529, 532, 681
FspBI	CTAG	2 cut(s)	309, 453
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	8 cut(s)	120, 161, 283, 426, 511, 529, 532, 681
HaeIII	GGCC	4 cut(s)	294, 442, 462, 636
HgaI	GACGC	1 cut(s)	686
HhaI	GCGC	1 cut(s)	308
Hin1II	CATG	2 cut(s)	688, 724
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HindIII	AAGCTT	1 cut(s)	487
HinfI	GANTC	3 cut(s)	245, 623, 692
HphI	GGTGA	1 cut(s)	465
Hpy166II	GTNNAC	2 cut(s)	255, 315
Hpy188I	TCNGA	3 cut(s)	343, 660, 676
Hpy8I	GTNNAC	2 cut(s)	255, 315
HpyAV	CCTTC	2 cut(s)	21, 264
HpyCH4III	ACNGT	5 cut(s)	43, 242, 259, 524, 538
HpyCH4IV	ACGT	1 cut(s)	576
HpyCH4V	TGCA	4 cut(s)	320, 513, 640, 720
HpyF10VI	GCNNNNNNNGC	3 cut(s)	291, 412, 686
HpyF3I	CTNAG	3 cut(s)	464, 596, 657
HpySE526I	ACGT	1 cut(s)	576
Hsp92II	CATG	2 cut(s)	688, 724
HspAI	GCGC	1 cut(s)	306
Kzo9I	GATC	1 cut(s)	214
LmnI	GCTCC	3 cut(s)	116, 412, 663
Lsp1109I	GCAGC	6 cut(s)	147, 437, 497, 540, 543, 667
LweI	GCATC	2 cut(s)	198, 283
MaeI	CTAG	2 cut(s)	309, 453
MaeII	ACGT	1 cut(s)	576
MaeIII	GTNAC	2 cut(s)	628, 649
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	1 cut(s)	377
MfeI	CAATTG	1 cut(s)	103
MhlI	GDGCHC	2 cut(s)	444, 582
MluCI	AATT	7 cut(s)	84, 103, 109, 136, 155, 354, 391
MlyI	GAGTC	1 cut(s)	701
MnlI	CCTC	6 cut(s)	22, 83, 133, 369, 473, 654
MseI	TTAA	1 cut(s)	264
MspA1I	CMGCKG	1 cut(s)	222
MspR9I	CCNGG	3 cut(s)	52, 196, 459
MunI	CAATTG	1 cut(s)	103
MvaI	CCWGG	3 cut(s)	52, 196, 459
MwoI	GCNNNNNNNGC	3 cut(s)	291, 412, 686
NcoI	CCATGG	1 cut(s)	684
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	2 cut(s)	688, 724
NlaIV	GGNNCC	3 cut(s)	118, 442, 443
NmeAIII	GCCGAG	1 cut(s)	320
PfeI	GAWTC	2 cut(s)	245, 623
PflMI	CCANNNNNTGG	1 cut(s)	356
PkrI	GCNGC	8 cut(s)	121, 162, 284, 427, 512, 530, 533, 682
PleI	GAGTC	1 cut(s)	700
PmaCI	CACGTG	1 cut(s)	577
PmlI	CACGTG	1 cut(s)	577
PpsI	GAGTC	1 cut(s)	700
Ppu21I	YACGTR	1 cut(s)	577
Psp6I	CCWGG	3 cut(s)	50, 194, 457
PspCI	CACGTG	1 cut(s)	577
PspGI	CCWGG	3 cut(s)	50, 194, 457
PspN4I	GGNNCC	3 cut(s)	118, 442, 443
PspOMI	GGGCCC	1 cut(s)	440
PspPI	GGNCC	3 cut(s)	440, 441, 563
PstNI	CAGNNNCTG	1 cut(s)	632
PvuII	CAGCTG	1 cut(s)	222
RsaI	GTAC	3 cut(s)	129, 316, 499
RsaNI	GTAC	3 cut(s)	128, 315, 498
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	8 cut(s)	120, 161, 283, 426, 511, 529, 532, 681
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	3 cut(s)	440, 441, 563
SchI	GAGTC	1 cut(s)	701
ScrFI	CCNGG	3 cut(s)	52, 196, 459
SduI	GDGCHC	2 cut(s)	444, 582
SfaNI	GCATC	2 cut(s)	198, 283
SfcI	CTRYAG	2 cut(s)	223, 583
SinI	GGWCC	1 cut(s)	563
Sse9I	AATT	7 cut(s)	84, 103, 109, 136, 155, 354, 391
SsiI	CCGC	2 cut(s)	120, 283
SspMI	CTAG	2 cut(s)	309, 453
StyD4I	CCNGG	3 cut(s)	50, 194, 457
StyI	CCWWGG	1 cut(s)	684
TaaI	ACNGT	5 cut(s)	43, 242, 259, 524, 538
TaiI	ACGT	1 cut(s)	579
TaqI	TCGA	4 cut(s)	70, 88, 268, 557
TasI	AATT	7 cut(s)	84, 103, 109, 136, 155, 354, 391
TatI	WGTACW	2 cut(s)	127, 314
TauI	GCSGC	2 cut(s)	122, 285
TfiI	GAWTC	2 cut(s)	245, 623
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	1 cut(s)	541
TseI	GCWGC	6 cut(s)	160, 425, 510, 528, 531, 680
TspGWI	ACGGA	1 cut(s)	48
TspRI	CASTG	1 cut(s)	541
Van91I	CCANNNNNTGG	1 cut(s)	356
VpaK11BI	GGWCC	1 cut(s)	563
XapI	RAATTY	2 cut(s)	84, 109
XspI	CTAG	2 cut(s)	309, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.