Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005733.1

Orthogroup ID

OG0031351

Physical Location & Seq

Genomic Coordinates Forward (+)

4954 .. 6200

Gene Structure 1247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005733.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atgaacatctacaggacgacgggccgccatcccagcgtagccagtcccgtgccgcattgcctagaggtagaggatgcaaaccggttgccccaactcgattcatttgggcaaagtttcgtgggttttggtgttgaagaacaactatcctcttggaggccggtggaggacatgggcggagctgtcgatttactccttcaactttggcttcgtcgggttattggggcttcaccggtaaatagagaacatcttcagcttggaggtgtcacccgccgtcgggacgaccacatcggcctgcagctcagagcgggatacctcgcctccaccggcgccaaggaatatttacacctatcgaaccaccacagcaagatttacaccatggaagctctagatgtaagcgcgaagctcctcgagaaaaacctcgagtgctacaccgcctggaattacagaaagcttgccgtccaacgcaacctcctcgccattcagtccgactccgattccggcgcgatgaaggctattctcgacctggaactaaaagtggtaagggaactgattgatgcggttttgattgtgaatttaattgagatgagattaggttcaattgagaatttgagaattggggattggttgtgtaggtggtggcaagtcctatggagcttggcattattctttagaccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008318 GO:0009987 GO:0010035 GO:0010038 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0031267 GO:0031974 GO:0031981 GO:0032501 GO:0032991 GO:0036211 GO:0042221 GO:0042981 GO:0043067 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050789 GO:0050794 GO:0050877 GO:0050896 GO:0050953 GO:0051020 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0097354 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4 LRR_6 PPTA

Protein Analysis

225

Amino Acids

25.6

Weight (kDa)

6.66

Isoelectric Point (pI)

58.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031351)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005733.1_g000003
rosa_samantha	Rh1CG282700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	326
AccBSI	CCGCTC	1 cut(s)	305
AccII	CGCG	2 cut(s)	398, 503
AciI	CCGC	7 cut(s)	25, 53, 174, 268, 305, 432, 557
AcsI	RAATTY	2 cut(s)	571, 604
AcuI	CTGAAG	1 cut(s)	233
AcyI	GRCGYC	1 cut(s)	327
AfiI	CCNNNNNNNGG	3 cut(s)	153, 273, 274
AgeI	ACCGGT	2 cut(s)	81, 229
AgsI	TTSAA	3 cut(s)	134, 197, 597
AjnI	CCWGG	2 cut(s)	434, 522
AjuI	GAANNNNNNNTTGG	2 cut(s)	604, 636
AluBI	AGCT	7 cut(s)	179, 253, 298, 383, 403, 451, 654
AluI	AGCT	7 cut(s)	179, 253, 298, 383, 403, 451, 654
Ama87I	CYCGRG	2 cut(s)	407, 419
AoxI	GGCC	3 cut(s)	22, 155, 289
ApeKI	GCWGC	1 cut(s)	295
ApoI	RAATTY	2 cut(s)	571, 604
AsiGI	ACCGGT	2 cut(s)	81, 229
Asp700I	GAANNNNTTC	1 cut(s)	246
AspLEI	GCGC	3 cut(s)	329, 398, 503
AspS9I	GGNCC	1 cut(s)	22
AsuHPI	GGTGA	2 cut(s)	219, 256
AvaI	CYCGRG	2 cut(s)	407, 419
BanI	GGYRCC	1 cut(s)	326
BbvI	GCAGC	1 cut(s)	307
BccI	CCATC	1 cut(s)	36
BceAI	ACGGC	2 cut(s)	255, 440
BcgI	CGANNNNNNTGC	2 cut(s)	454, 488
BciT130I	CCWGG	2 cut(s)	436, 524
BciVI	GTATCC	1 cut(s)	302
BfaI	CTAG	2 cut(s)	62, 386
BfmI	CTRYAG	2 cut(s)	10, 293
BfoI	RGCGCY	1 cut(s)	330
BfuI	GTATCC	1 cut(s)	302
BisI	GCNGC	3 cut(s)	25, 53, 296
BlsI	GCNGC	3 cut(s)	26, 54, 297
Bme1390I	CCNGG	2 cut(s)	436, 524
BmeT110I	CYCGRG	2 cut(s)	407, 419
BmgT120I	GGNCC	1 cut(s)	22
BmiI	GGNNCC	1 cut(s)	328
BmrFI	CCNGG	2 cut(s)	436, 524
BmsI	GCATC	2 cut(s)	64, 544
BsaHI	GRCGYC	1 cut(s)	327
BsaJI	CCNNGG	2 cut(s)	330, 375
BsaWI	WCCGGW	2 cut(s)	81, 229
BsaXI	ACNNNNNCTCC	4 cut(s)	302, 332, 453, 483
Bsc4I	CCNNNNNNNGG	3 cut(s)	153, 273, 274
Bse118I	RCCGGY	4 cut(s)	81, 157, 229, 323
Bse1I	ACTGG	1 cut(s)	42
Bse3DI	GCAATG	1 cut(s)	55
BseBI	CCWGG	2 cut(s)	436, 524
BseDI	CCNNGG	2 cut(s)	330, 375
BseGI	GGATG	2 cut(s)	28, 79
BseLI	CCNNNNNNNGG	3 cut(s)	153, 273, 274
BseMI	GCAATG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	313
BseNI	ACTGG	1 cut(s)	42
BseRI	GAGGAG	2 cut(s)	395, 461
BseXI	GCAGC	1 cut(s)	307
BseYI	CCCAGC	1 cut(s)	32
Bsh1236I	CGCG	2 cut(s)	398, 503
BshFI	GGCC	3 cut(s)	24, 157, 291
BshNI	GGYRCC	1 cut(s)	326
BshTI	ACCGGT	2 cut(s)	81, 229
BsiHKCI	CYCGRG	2 cut(s)	407, 419
BsiSI	CCGG	5 cut(s)	82, 158, 230, 324, 498
BslFI	GGGAC	2 cut(s)	30, 290
BslI	CCNNNNNNNGG	3 cut(s)	153, 273, 274
BsmFI	GGGAC	2 cut(s)	30, 290
BsnI	GGCC	3 cut(s)	24, 157, 291
BsoBI	CYCGRG	2 cut(s)	407, 419
Bsp19I	CCATGG	1 cut(s)	375
BspACI	CCGC	7 cut(s)	25, 53, 174, 268, 305, 432, 557
BspANI	GGCC	3 cut(s)	24, 157, 291
BspCNI	CTCAG	1 cut(s)	312
BspFNI	CGCG	2 cut(s)	398, 503
BspLI	GGNNCC	1 cut(s)	328
BspMAI	CTGCAG	1 cut(s)	297
BspT107I	GGYRCC	1 cut(s)	326
BsrBI	CCGCTC	1 cut(s)	305
BsrDI	GCAATG	1 cut(s)	55
BsrFI	RCCGGY	4 cut(s)	81, 157, 229, 323
BsrI	ACTGG	1 cut(s)	42
BssAI	RCCGGY	4 cut(s)	81, 157, 229, 323
BssECI	CCNNGG	2 cut(s)	330, 375
BssNI	GRCGYC	1 cut(s)	327
BssT1I	CCWWGG	2 cut(s)	330, 375
Bst2UI	CCWGG	2 cut(s)	436, 524
BstACI	GRCGYC	1 cut(s)	327
BstC8I	GCNNGC	2 cut(s)	293, 453
BstDEI	CTNAG	1 cut(s)	299
BstDSI	CCRYGG	1 cut(s)	375
BstENI	CCTNNNNNAGG	1 cut(s)	151
BstF5I	GGATG	2 cut(s)	28, 79
BstFNI	CGCG	2 cut(s)	398, 503
BstH2I	RGCGCY	1 cut(s)	330
BstHHI	GCGC	3 cut(s)	329, 398, 503
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 509
BstNI	CCWGG	2 cut(s)	436, 524
BstSCI	CCNGG	2 cut(s)	434, 522
BstSFI	CTRYAG	2 cut(s)	10, 293
BstUI	CGCG	2 cut(s)	398, 503
BstV1I	GCAGC	1 cut(s)	307
BsuI	GTATCC	1 cut(s)	302
BsuRI	GGCC	3 cut(s)	24, 157, 291
BtgI	CCRYGG	1 cut(s)	375
BtgZI	GCGATG	1 cut(s)	518
BtsCI	GGATG	2 cut(s)	28, 79
Cac8I	GCNNGC	2 cut(s)	293, 453
CfoI	GCGC	3 cut(s)	329, 398, 503
Cfr10I	RCCGGY	4 cut(s)	81, 157, 229, 323
Cfr13I	GGNCC	1 cut(s)	22
CspAI	ACCGGT	2 cut(s)	81, 229
CviAII	CATG	3 cut(s)	169, 376, 675
DdeI	CTNAG	1 cut(s)	299
DinI	GGCGCC	1 cut(s)	328
EciI	GGCGGA	1 cut(s)	189
Eco130I	CCWWGG	2 cut(s)	330, 375
Eco57I	CTGAAG	1 cut(s)	233
Eco88I	CYCGRG	2 cut(s)	407, 419
EcoNI	CCTNNNNNAGG	1 cut(s)	151
EcoRII	CCWGG	2 cut(s)	434, 522
EcoT14I	CCWWGG	2 cut(s)	330, 375
EgeI	GGCGCC	1 cut(s)	328
EheI	GGCGCC	1 cut(s)	328
ErhI	CCWWGG	2 cut(s)	330, 375
FaeI	CATG	3 cut(s)	172, 379, 678
FaiI	YATR	4 cut(s)	170, 377, 649, 676
FaqI	GGGAC	2 cut(s)	30, 290
FatI	CATG	3 cut(s)	168, 375, 674
FauI	CCCGC	2 cut(s)	275, 298
Fnu4HI	GCNGC	3 cut(s)	25, 53, 296
FokI	GGATG	2 cut(s)	15, 86
Fsp4HI	GCNGC	3 cut(s)	25, 53, 296
FspBI	CTAG	2 cut(s)	62, 386
GlaI	GCGC	3 cut(s)	328, 397, 502
GluI	GCNGC	3 cut(s)	25, 53, 296
GsaI	CCCAGC	1 cut(s)	36
HaeII	RGCGCY	1 cut(s)	330
HaeIII	GGCC	3 cut(s)	24, 157, 291
HapII	CCGG	5 cut(s)	82, 158, 230, 324, 498
HhaI	GCGC	3 cut(s)	329, 398, 503
Hin1I	GRCGYC	1 cut(s)	327
Hin1II	CATG	3 cut(s)	172, 379, 678
Hin6I	GCGC	3 cut(s)	327, 396, 501
HinP1I	GCGC	3 cut(s)	327, 396, 501
HindIII	AAGCTT	1 cut(s)	449
HinfI	GANTC	3 cut(s)	98, 488, 494
HpaII	CCGG	5 cut(s)	82, 158, 230, 324, 498
HphI	GGTGA	2 cut(s)	219, 256
Hpy188I	TCNGA	3 cut(s)	302, 487, 493
Hpy188III	TCNNGA	4 cut(s)	275, 386, 409, 518
Hpy99I	CGWCG	3 cut(s)	22, 213, 276
HpyAV	CCTTC	2 cut(s)	203, 502
HpyCH4V	TGCA	2 cut(s)	77, 295
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 509
HpyF3I	CTNAG	1 cut(s)	299
Hsp92I	GRCGYC	1 cut(s)	327
Hsp92II	CATG	3 cut(s)	172, 379, 678
HspAI	GCGC	3 cut(s)	327, 396, 501
KasI	GGCGCC	1 cut(s)	326
LmnI	GCTCC	3 cut(s)	176, 408, 651
Lsp1109I	GCAGC	1 cut(s)	307
LweI	GCATC	2 cut(s)	64, 544
MaeI	CTAG	2 cut(s)	62, 386
MaeIII	GTNAC	1 cut(s)	262
MbiI	CCGCTC	1 cut(s)	305
MboII	GAAGA	2 cut(s)	146, 239
MfeI	CAATTG	1 cut(s)	597
MluCI	AATT	6 cut(s)	439, 571, 576, 597, 604, 612
Mly113I	GGCGCC	1 cut(s)	327
MlyI	GAGTC	1 cut(s)	482
MmeI	TCCRAC	2 cut(s)	484, 510
MroXI	GAANNNNTTC	1 cut(s)	246
MseI	TTAA	1 cut(s)	575
MspI	CCGG	5 cut(s)	82, 158, 230, 324, 498
MspR9I	CCNGG	2 cut(s)	436, 524
MunI	CAATTG	1 cut(s)	597
MvaI	CCWGG	2 cut(s)	436, 524
MvnI	CGCG	2 cut(s)	398, 503
MwoI	GCNNNNNNNGC	2 cut(s)	33, 509
NarI	GGCGCC	1 cut(s)	327
NcoI	CCATGG	1 cut(s)	375
NlaIII	CATG	3 cut(s)	172, 379, 678
NlaIV	GGNNCC	1 cut(s)	328
NmuCI	GTSAC	1 cut(s)	262
PaeR7I	CTCGAG	2 cut(s)	407, 419
PdmI	GAANNNNTTC	1 cut(s)	246
PfeI	GAWTC	2 cut(s)	98, 494
PinAI	ACCGGT	2 cut(s)	81, 229
PkrI	GCNGC	3 cut(s)	26, 54, 297
PleI	GAGTC	1 cut(s)	482
PluTI	GGCGCC	1 cut(s)	330
PpsI	GAGTC	1 cut(s)	482
Psp6I	CCWGG	2 cut(s)	434, 522
PspFI	CCCAGC	1 cut(s)	32
PspGI	CCWGG	2 cut(s)	434, 522
PspN4I	GGNNCC	1 cut(s)	328
PspPI	GGNCC	1 cut(s)	22
PspXI	VCTCGAGB	1 cut(s)	419
PstI	CTGCAG	1 cut(s)	297
SaqAI	TTAA	1 cut(s)	575
SatI	GCNGC	3 cut(s)	25, 53, 296
Sau96I	GGNCC	1 cut(s)	22
SchI	GAGTC	1 cut(s)	482
ScrFI	CCNGG	2 cut(s)	436, 524
SfaNI	GCATC	2 cut(s)	64, 544
SfcI	CTRYAG	2 cut(s)	10, 293
SfoI	GGCGCC	1 cut(s)	328
Sfr274I	CTCGAG	2 cut(s)	407, 419
SgrAI	CRCCGGYG	1 cut(s)	323
SlaI	CTCGAG	2 cut(s)	407, 419
SmlI	CTYRAG	2 cut(s)	407, 419
SmoI	CTYRAG	2 cut(s)	407, 419
Sse9I	AATT	6 cut(s)	439, 571, 576, 597, 604, 612
SsiI	CCGC	7 cut(s)	25, 53, 174, 268, 305, 432, 557
SspDI	GGCGCC	1 cut(s)	326
SspI	AATATT	1 cut(s)	338
SspMI	CTAG	2 cut(s)	62, 386
StyD4I	CCNGG	2 cut(s)	434, 522
StyI	CCWWGG	2 cut(s)	330, 375
TaqI	TCGA	6 cut(s)	96, 183, 350, 408, 420, 519
TasI	AATT	6 cut(s)	439, 571, 576, 597, 604, 612
TauI	GCSGC	2 cut(s)	27, 55
TfiI	GAWTC	2 cut(s)	98, 494
Tru1I	TTAA	1 cut(s)	575
Tru9I	TTAA	1 cut(s)	575
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	1 cut(s)	295
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	3 cut(s)	17, 90, 521
XagI	CCTNNNNNAGG	1 cut(s)	151
XapI	RAATTY	2 cut(s)	571, 604
XbaI	TCTAGA	1 cut(s)	385
XhoI	CTCGAG	2 cut(s)	407, 419
XmnI	GAANNNNTTC	1 cut(s)	246
XspI	CTAG	2 cut(s)	62, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.