Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0031351

Physical Location & Seq

Genomic Coordinates Reverse (-)

55448742 .. 55449212

Gene Structure 471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG282700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGAATCCAAATCTGATTTGGGCACCAAAAAAATTTTCTCTGGGCACAGAGAACATCTTCAGCTTGGAGGTGTCACGTGCCATCGGGACGACCACATCGGCCTGCAGCTCAGAGCAGGATACCTCGCCTCCACCGGCGCCAAGGAATATTTACACCTATCGAACCACCACAGCAAGATTTACACCATGGAAGCTCTAGATGTAAGCGCGAAGCTCCTCAAGAAAAACCTCGAATGCTACACCGCCTGGAATTACAGAAAGCTTGCTGTCCAACGCAACCTCCTTGCCATTCAGTCCGACTCCGATTCCGATTCCGATTCCGGCGCGATGAAGGCTATTCTCGACCTGGAATTAAAAGTGGTAAGGGAACTGATTGATGCGGTTTTGATTGTGAATTTAATTGAGATGAGATTAGGTTCAATTGAGAATTTGAGAATTGGGGATTGGTTGTGTAGGTGGTGGATGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008318 GO:0009987 GO:0010035 GO:0010038 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0031267 GO:0031974 GO:0031981 GO:0032501 GO:0032991 GO:0036211 GO:0042221 GO:0042981 GO:0043067 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050789 GO:0050794 GO:0050877 GO:0050896 GO:0050953 GO:0051020 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0097354 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4 LRR_6 PPTA

Protein Analysis

156

Amino Acids

17.78

Weight (kDa)

7.77

Isoelectric Point (pI)

37.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPTA	PF01239	64 - 92	1e-05	Protein prenyltransferase alpha subunit repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031351)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005733.1_g000003
rosa_samantha	Rh1CG282700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	23, 137
AccII	CGCG	2 cut(s)	209, 326
AciI	CCGC	2 cut(s)	243, 380
AcsI	RAATTY	3 cut(s)	33, 394, 427
AcuI	CTGAAG	1 cut(s)	44
AcvI	CACGTG	1 cut(s)	78
AcyI	GRCGYC	1 cut(s)	138
AgsI	TTSAA	1 cut(s)	420
AjnI	CCWGG	2 cut(s)	245, 345
AjuI	GAANNNNNNNTTGG	4 cut(s)	20, 52, 427, 459
AluBI	AGCT	5 cut(s)	64, 109, 194, 214, 262
AluI	AGCT	5 cut(s)	64, 109, 194, 214, 262
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	1 cut(s)	106
ApoI	RAATTY	3 cut(s)	33, 394, 427
Asp700I	GAANNNNTTC	1 cut(s)	57
AspLEI	GCGC	3 cut(s)	140, 209, 326
BaeGI	GKGCMC	2 cut(s)	26, 48
BanI	GGYRCC	2 cut(s)	23, 137
BbrPI	CACGTG	1 cut(s)	78
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	1 cut(s)	90
BciT130I	CCWGG	2 cut(s)	247, 347
BciVI	GTATCC	1 cut(s)	113
BfaI	CTAG	1 cut(s)	197
BfmI	CTRYAG	1 cut(s)	104
BfoI	RGCGCY	1 cut(s)	141
BfuI	GTATCC	1 cut(s)	113
BisI	GCNGC	1 cut(s)	107
BlsI	GCNGC	1 cut(s)	108
Bme1390I	CCNGG	2 cut(s)	247, 347
BmiI	GGNNCC	2 cut(s)	25, 139
BmrFI	CCNGG	2 cut(s)	247, 347
BmsI	GCATC	2 cut(s)	367, 453
BpuEI	CTTGAG	1 cut(s)	203
BsaAI	YACGTR	1 cut(s)	78
BsaHI	GRCGYC	1 cut(s)	138
BsaJI	CCNNGG	2 cut(s)	141, 186
BsaXI	ACNNNNNCTCC	4 cut(s)	113, 143, 264, 294
Bse118I	RCCGGY	1 cut(s)	134
BseBI	CCWGG	2 cut(s)	247, 347
BseDI	CCNNGG	2 cut(s)	141, 186
BseGI	GGATG	1 cut(s)	468
BseMII	CTCAG	1 cut(s)	124
BseRI	GAGGAG	1 cut(s)	206
BseSI	GKGCMC	2 cut(s)	26, 48
BseXI	GCAGC	1 cut(s)	118
Bsh1236I	CGCG	2 cut(s)	209, 326
BshFI	GGCC	1 cut(s)	102
BshNI	GGYRCC	2 cut(s)	23, 137
BsiSI	CCGG	2 cut(s)	135, 321
BslFI	GGGAC	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	101
BsmI	GAATGC	1 cut(s)	239
BsnI	GGCC	1 cut(s)	102
Bsp1286I	GDGCHC	2 cut(s)	26, 48
Bsp19I	CCATGG	1 cut(s)	186
BspACI	CCGC	2 cut(s)	243, 380
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	123
BspFNI	CGCG	2 cut(s)	209, 326
BspLI	GGNNCC	2 cut(s)	25, 139
BspMAI	CTGCAG	1 cut(s)	108
BspT107I	GGYRCC	2 cut(s)	23, 137
BsrFI	RCCGGY	1 cut(s)	134
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	141, 186
BssNI	GRCGYC	1 cut(s)	138
BssT1I	CCWWGG	2 cut(s)	141, 186
Bst2UI	CCWGG	2 cut(s)	247, 347
BstACI	GRCGYC	1 cut(s)	138
BstBAI	YACGTR	1 cut(s)	78
BstC8I	GCNNGC	2 cut(s)	104, 264
BstDEI	CTNAG	1 cut(s)	110
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	468
BstFNI	CGCG	2 cut(s)	209, 326
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	3 cut(s)	140, 209, 326
BstMWI	GCNNNNNNNGC	1 cut(s)	332
BstNI	CCWGG	2 cut(s)	247, 347
BstSCI	CCNGG	2 cut(s)	245, 345
BstSFI	CTRYAG	1 cut(s)	104
BstSLI	GKGCMC	2 cut(s)	26, 48
BstUI	CGCG	2 cut(s)	209, 326
BstV1I	GCAGC	1 cut(s)	118
BsuI	GTATCC	1 cut(s)	113
BsuRI	GGCC	1 cut(s)	102
BtgI	CCRYGG	1 cut(s)	186
BtgZI	GCGATG	1 cut(s)	341
BtsCI	GGATG	1 cut(s)	468
Cac8I	GCNNGC	2 cut(s)	104, 264
CfoI	GCGC	3 cut(s)	140, 209, 326
Cfr10I	RCCGGY	1 cut(s)	134
CviAII	CATG	1 cut(s)	187
CviJI	RGCY	7 cut(s)	64, 102, 109, 194, 214, 262, 335
CviKI_1	RGCY	7 cut(s)	64, 102, 109, 194, 214, 262, 335
DdeI	CTNAG	1 cut(s)	110
DinI	GGCGCC	1 cut(s)	139
Eco130I	CCWWGG	2 cut(s)	141, 186
Eco57I	CTGAAG	1 cut(s)	44
Eco72I	CACGTG	1 cut(s)	78
EcoRII	CCWGG	2 cut(s)	245, 345
EcoT14I	CCWWGG	2 cut(s)	141, 186
EgeI	GGCGCC	1 cut(s)	139
EheI	GGCGCC	1 cut(s)	139
ErhI	CCWWGG	2 cut(s)	141, 186
FaeI	CATG	1 cut(s)	190
FaiI	YATR	1 cut(s)	188
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	1 cut(s)	186
Fnu4HI	GCNGC	1 cut(s)	107
Fsp4HI	GCNGC	1 cut(s)	107
FspBI	CTAG	1 cut(s)	197
GlaI	GCGC	3 cut(s)	139, 208, 325
GluI	GCNGC	1 cut(s)	107
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	2 cut(s)	135, 321
HhaI	GCGC	3 cut(s)	140, 209, 326
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	1 cut(s)	190
Hin6I	GCGC	3 cut(s)	138, 207, 324
HinP1I	GCGC	3 cut(s)	138, 207, 324
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	5 cut(s)	5, 299, 305, 311, 317
HpaII	CCGG	2 cut(s)	135, 321
Hpy188I	TCNGA	6 cut(s)	16, 113, 298, 304, 310, 316
Hpy188III	TCNNGA	4 cut(s)	86, 197, 220, 341
HpyAV	CCTTC	1 cut(s)	325
HpyCH4IV	ACGT	1 cut(s)	77
HpyCH4V	TGCA	1 cut(s)	106
HpyF10VI	GCNNNNNNNGC	1 cut(s)	332
HpyF3I	CTNAG	1 cut(s)	110
HpySE526I	ACGT	1 cut(s)	77
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	1 cut(s)	190
HspAI	GCGC	3 cut(s)	138, 207, 324
KasI	GGCGCC	1 cut(s)	137
LmnI	GCTCC	1 cut(s)	219
LpnPI	CCDG	9 cut(s)	27, 102, 116, 148, 232, 259, 332, 334, 359
Lsp1109I	GCAGC	1 cut(s)	118
LweI	GCATC	2 cut(s)	367, 453
MaeI	CTAG	1 cut(s)	197
MaeII	ACGT	1 cut(s)	77
MaeIII	GTNAC	1 cut(s)	73
MboII	GAAGA	1 cut(s)	50
MfeI	CAATTG	1 cut(s)	420
MhlI	GDGCHC	2 cut(s)	26, 48
MluCI	AATT	8 cut(s)	33, 250, 350, 394, 399, 420, 427, 435
Mly113I	GGCGCC	1 cut(s)	138
MlyI	GAGTC	1 cut(s)	293
MmeI	TCCRAC	2 cut(s)	295, 321
MnlI	CCTC	6 cut(s)	62, 134, 139, 227, 239, 290
MroXI	GAANNNNTTC	1 cut(s)	57
MseI	TTAA	2 cut(s)	353, 398
MspI	CCGG	2 cut(s)	135, 321
MspR9I	CCNGG	2 cut(s)	247, 347
MunI	CAATTG	1 cut(s)	420
Mva1269I	GAATGC	1 cut(s)	239
MvaI	CCWGG	2 cut(s)	247, 347
MvnI	CGCG	2 cut(s)	209, 326
MwoI	GCNNNNNNNGC	1 cut(s)	332
NarI	GGCGCC	1 cut(s)	138
NcoI	CCATGG	1 cut(s)	186
NlaIII	CATG	1 cut(s)	190
NlaIV	GGNNCC	2 cut(s)	25, 139
NmuCI	GTSAC	1 cut(s)	73
PctI	GAATGC	1 cut(s)	239
PdmI	GAANNNNTTC	1 cut(s)	57
PfeI	GAWTC	4 cut(s)	5, 305, 311, 317
PkrI	GCNGC	1 cut(s)	108
PleI	GAGTC	1 cut(s)	293
PluTI	GGCGCC	1 cut(s)	141
PmaCI	CACGTG	1 cut(s)	78
PmlI	CACGTG	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	293
Ppu21I	YACGTR	1 cut(s)	78
Psp6I	CCWGG	2 cut(s)	245, 345
PspCI	CACGTG	1 cut(s)	78
PspGI	CCWGG	2 cut(s)	245, 345
PspN4I	GGNNCC	2 cut(s)	25, 139
PstI	CTGCAG	1 cut(s)	108
SaqAI	TTAA	2 cut(s)	353, 398
SatI	GCNGC	1 cut(s)	107
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	2 cut(s)	247, 347
SduI	GDGCHC	2 cut(s)	26, 48
SfaNI	GCATC	2 cut(s)	367, 453
SfcI	CTRYAG	1 cut(s)	104
SfoI	GGCGCC	1 cut(s)	139
SgrAI	CRCCGGYG	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	8 cut(s)	33, 250, 350, 394, 399, 420, 427, 435
SsiI	CCGC	2 cut(s)	243, 380
SspDI	GGCGCC	1 cut(s)	137
SspI	AATATT	1 cut(s)	149
SspMI	CTAG	1 cut(s)	197
StyD4I	CCNGG	2 cut(s)	245, 345
StyI	CCWWGG	2 cut(s)	141, 186
TaiI	ACGT	1 cut(s)	80
TaqI	TCGA	3 cut(s)	161, 231, 342
TasI	AATT	8 cut(s)	33, 250, 350, 394, 399, 420, 427, 435
TfiI	GAWTC	4 cut(s)	5, 305, 311, 317
Tru1I	TTAA	2 cut(s)	353, 398
Tru9I	TTAA	2 cut(s)	353, 398
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	1 cut(s)	106
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	1 cut(s)	344
XapI	RAATTY	3 cut(s)	33, 394, 427
XbaI	TCTAGA	1 cut(s)	196
XcmI	CCANNNNNNNNNTGG	1 cut(s)	16
XmnI	GAANNNNTTC	1 cut(s)	57
XspI	CTAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.