Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005749.1

Orthogroup ID

OG0030641

Physical Location & Seq

Genomic Coordinates Reverse (-)

5917 .. 7002

Gene Structure 1086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005749.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ctgaaccaaccaaacactggaagggaaatcaaattgtctttcttgaggggtagggcagtttggttaccgcctccttccggctggcttaaggccaactgtgatggagcctttgattcctcctccaaatctggtggacaaccagacaagaacaaatactccttcgccgagcacgccttcaagctcgtcgccgatgcatgggccgttctctccgacccggccaagaagccggtcttcgacaccgagctgggcctctacagcccactcgatctcaccgccgccgcagcagcctccaatccgaacaagcttccgtaccctgaggatgagggtcgacgccgatccaagagatgtcggaaaagcaggaagtgcgtgagggcgtggttttggagagagggaccaaaaccacgccctcacgcacttcctgcttttccgacatctcttggatcggcgtcgaccctcatcctcagggtactcatacagtatataacaataaggacgccgtccagaagctcgatattctcaacctctgttgattttgctgctgctcctccgaaacgcctagtttcgagcattctacccctaccgcaccggaagcttgttcggattggaggctgctgcggcggcggtgagatcgagtgggctgtagaggcccagctcggtgtcgaagaccggcttcttggccgggtcggagagaacgacccatgcatcggcgacgagcttgaaggcgtgctcggcgaaggagtatttgttcttgtctggttggaggagcaacaccagccgtcgatacgatctcttgatcagatcggtgatccacctggagaatggagtaccagtcgtggtggttgtttacgcgcttatcggaggctagaaggacgtcgacgactgctaagatctgatcggacctgtgacccgtccaatagaggctctgtttcttgcacgagaatggcaaagtcgcgcgaactgctcagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008047 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0030234 GO:0030433 GO:0031984 GO:0032781 GO:0033554 GO:0034976 GO:0036503 GO:0042175 GO:0042221 GO:0043085 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043462 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0050896 GO:0051336 GO:0051345 GO:0051603 GO:0051716 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

322

Amino Acids

35.58

Weight (kDa)

9.65

Isoelectric Point (pI)

55.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030641)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000009294
rosa_multiflora	Rmu_sc0005749.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	874
AccB7I	CCANNNNNTGG	1 cut(s)	17
AccI	GTMKAC	3 cut(s)	328, 449, 874
AccII	CGCG	3 cut(s)	849, 952, 954
AciI	CCGC	8 cut(s)	68, 273, 276, 279, 581, 615, 618, 621
AclWI	GGATC	3 cut(s)	330, 448, 800
AcoI	YGGCCR	2 cut(s)	216, 676
AcyI	GRCGYC	4 cut(s)	331, 446, 494, 871
AfaI	GTAC	3 cut(s)	311, 468, 826
AfiI	CCNNNNNNNGG	4 cut(s)	17, 77, 195, 704
AflII	CTTAAG	1 cut(s)	86
AgsI	TTSAA	2 cut(s)	178, 719
AjnI	CCWGG	1 cut(s)	811
AloI	GAACNNNNNNTCC	4 cut(s)	140, 172, 729, 761
AluBI	AGCT	7 cut(s)	181, 244, 304, 507, 592, 652, 715
AluI	AGCT	7 cut(s)	181, 244, 304, 507, 592, 652, 715
Alw21I	GWGCWC	2 cut(s)	171, 729
AlwI	GGATC	3 cut(s)	330, 448, 800
AoxI	GGCC	6 cut(s)	90, 198, 216, 247, 645, 676
ApeKI	GCWGC	6 cut(s)	281, 284, 536, 539, 609, 612
AspLEI	GCGC	2 cut(s)	851, 954
AspS9I	GGNCC	5 cut(s)	198, 247, 392, 646, 897
AsuC2I	CCSGG	2 cut(s)	215, 680
AsuHPI	GGTGA	3 cut(s)	262, 635, 815
AvaII	GGWCC	2 cut(s)	392, 897
AxyI	CCTNAGG	2 cut(s)	315, 461
BauI	CACGAG	1 cut(s)	934
BbsI	GAAGAC	2 cut(s)	223, 669
Bbv12I	GWGCWC	2 cut(s)	171, 729
BbvI	GCAGC	6 cut(s)	293, 296, 523, 526, 596, 599
BccI	CCATC	1 cut(s)	95
BceAI	ACGGC	3 cut(s)	185, 481, 760
BciT130I	CCWGG	1 cut(s)	813
BclI	TGATCA	1 cut(s)	793
BcnI	CCSGG	2 cut(s)	215, 680
BfaI	CTAG	2 cut(s)	557, 863
BfmI	CTRYAG	2 cut(s)	253, 639
BfrI	CTTAAG	1 cut(s)	86
BglII	AGATCT	1 cut(s)	887
Bme1390I	CCNGG	3 cut(s)	215, 680, 813
Bme18I	GGWCC	2 cut(s)	392, 897
BmgT120I	GGNCC	5 cut(s)	198, 247, 392, 646, 897
BmiI	GGNNCC	2 cut(s)	106, 393
BmrFI	CCNGG	3 cut(s)	215, 680, 813
BmsI	GCATC	2 cut(s)	181, 711
BpiI	GAAGAC	2 cut(s)	223, 669
BpmI	CTGGAG	1 cut(s)	834
BpuEI	CTTGAG	1 cut(s)	64
BpuMI	CCSGG	2 cut(s)	215, 680
BsaHI	GRCGYC	4 cut(s)	331, 446, 494, 871
BsaWI	WCCGGW	1 cut(s)	585
BsaXI	ACNNNNNCTCC	6 cut(s)	140, 170, 729, 759, 814, 844
Bsc4I	CCNNNNNNNGG	4 cut(s)	17, 77, 195, 704
Bse118I	RCCGGY	2 cut(s)	226, 666
Bse1I	ACTGG	2 cut(s)	22, 828
Bse21I	CCTNAGG	2 cut(s)	315, 461
BseBI	CCWGG	1 cut(s)	813
BseGI	GGATG	2 cut(s)	325, 456
BseLI	CCNNNNNNNGG	4 cut(s)	17, 77, 195, 704
BseMII	CTCAG	2 cut(s)	306, 475
BseNI	ACTGG	2 cut(s)	22, 828
BseRI	GAGGAG	3 cut(s)	109, 534, 776
BseXI	GCAGC	6 cut(s)	293, 296, 523, 526, 596, 599
BseYI	CCCAGC	2 cut(s)	244, 648
Bsh1236I	CGCG	3 cut(s)	849, 952, 954
BshFI	GGCC	6 cut(s)	92, 200, 218, 249, 647, 678
BsiHKAI	GWGCWC	2 cut(s)	171, 729
BsiSI	CCGG	6 cut(s)	78, 215, 227, 586, 667, 679
BslFI	GGGAC	1 cut(s)	405
BslI	CCNNNNNNNGG	4 cut(s)	17, 77, 195, 704
BsmFI	GGGAC	1 cut(s)	405
BsmI	GAATGC	1 cut(s)	567
BsnI	GGCC	6 cut(s)	92, 200, 218, 249, 647, 678
Bsp1286I	GDGCHC	2 cut(s)	171, 729
BspACI	CCGC	8 cut(s)	68, 273, 276, 279, 581, 615, 618, 621
BspANI	GGCC	6 cut(s)	92, 200, 218, 249, 647, 678
BspCNI	CTCAG	2 cut(s)	307, 474
BspFNI	CGCG	3 cut(s)	849, 952, 954
BspLI	GGNNCC	2 cut(s)	106, 393
BspPI	GGATC	3 cut(s)	330, 448, 800
BspTI	CTTAAG	1 cut(s)	86
BsrFI	RCCGGY	2 cut(s)	226, 666
BsrI	ACTGG	2 cut(s)	22, 828
BssAI	RCCGGY	2 cut(s)	226, 666
BssNI	GRCGYC	4 cut(s)	331, 446, 494, 871
BssSI	CACGAG	1 cut(s)	934
Bst2BI	CACGAG	1 cut(s)	934
Bst2UI	CCWGG	1 cut(s)	813
Bst4CI	ACNGT	2 cut(s)	98, 477
BstACI	GRCGYC	4 cut(s)	331, 446, 494, 871
BstAFI	CTTAAG	1 cut(s)	86
BstAPI	GCANNNNNTGC	2 cut(s)	363, 419
BstC8I	GCNNGC	3 cut(s)	83, 171, 725
BstDEI	CTNAG	4 cut(s)	315, 461, 884, 962
BstEII	GGTNACC	1 cut(s)	63
BstF5I	GGATG	2 cut(s)	325, 456
BstFNI	CGCG	3 cut(s)	849, 952, 954
BstHHI	GCGC	2 cut(s)	851, 954
BstNI	CCWGG	1 cut(s)	813
BstPI	GGTNACC	1 cut(s)	63
BstSCI	CCNGG	3 cut(s)	213, 678, 811
BstSFI	CTRYAG	2 cut(s)	253, 639
BstUI	CGCG	3 cut(s)	849, 952, 954
BstV1I	GCAGC	6 cut(s)	293, 296, 523, 526, 596, 599
BstV2I	GAAGAC	2 cut(s)	223, 669
BstX2I	RGATCY	1 cut(s)	887
BstYI	RGATCY	1 cut(s)	887
Bsu36I	CCTNAGG	2 cut(s)	315, 461
BsuRI	GGCC	6 cut(s)	92, 200, 218, 249, 647, 678
BtsCI	GGATG	2 cut(s)	325, 456
BtsIMutI	CAGTG	1 cut(s)	15
Cac8I	GCNNGC	3 cut(s)	83, 171, 725
CfoI	GCGC	2 cut(s)	851, 954
Cfr10I	RCCGGY	2 cut(s)	226, 666
Cfr13I	GGNCC	5 cut(s)	198, 247, 392, 646, 897
CseI	GACGC	3 cut(s)	339, 435, 502
Csp6I	GTAC	3 cut(s)	310, 467, 825
CspCI	CAANNNNNGTGG	2 cut(s)	112, 147
CviAII	CATG	2 cut(s)	195, 699
CviQI	GTAC	3 cut(s)	310, 467, 825
DdeI	CTNAG	4 cut(s)	315, 461, 884, 962
EaeI	YGGCCR	2 cut(s)	216, 676
Eco47I	GGWCC	2 cut(s)	392, 897
Eco81I	CCTNAGG	2 cut(s)	315, 461
Eco91I	GGTNACC	1 cut(s)	63
EcoO65I	GGTNACC	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	811
EcoT22I	ATGCAT	2 cut(s)	196, 704
FaeI	CATG	2 cut(s)	198, 702
FaiI	YATR	5 cut(s)	196, 473, 480, 482, 700
FalI	AAGNNNNNCTT	4 cut(s)	215, 247, 654, 686
FaqI	GGGAC	1 cut(s)	405
FatI	CATG	2 cut(s)	194, 698
FbaI	TGATCA	1 cut(s)	793
FblI	GTMKAC	3 cut(s)	328, 449, 874
FokI	GGATG	2 cut(s)	332, 443
FspBI	CTAG	2 cut(s)	557, 863
GlaI	GCGC	2 cut(s)	850, 953
GsaI	CCCAGC	2 cut(s)	248, 652
GsuI	CTGGAG	1 cut(s)	834
HaeIII	GGCC	6 cut(s)	92, 200, 218, 249, 647, 678
HapII	CCGG	6 cut(s)	78, 215, 227, 586, 667, 679
HgaI	GACGC	3 cut(s)	339, 435, 502
HhaI	GCGC	2 cut(s)	851, 954
Hin1I	GRCGYC	4 cut(s)	331, 446, 494, 871
Hin1II	CATG	2 cut(s)	198, 702
Hin6I	GCGC	2 cut(s)	849, 952
HinP1I	GCGC	2 cut(s)	849, 952
HincII	GTYRAC	3 cut(s)	329, 450, 875
HindII	GTYRAC	3 cut(s)	329, 450, 875
HindIII	AAGCTT	2 cut(s)	302, 590
HinfI	GANTC	1 cut(s)	113
HpaII	CCGG	6 cut(s)	78, 215, 227, 586, 667, 679
HphI	GGTGA	3 cut(s)	262, 635, 815
Hpy166II	GTNNAC	5 cut(s)	134, 329, 450, 845, 875
Hpy188III	TCNNGA	3 cut(s)	43, 501, 791
Hpy8I	GTNNAC	5 cut(s)	134, 329, 450, 845, 875
Hpy99I	CGWCG	7 cut(s)	188, 333, 451, 713, 781, 876, 879
HpyAV	CCTTC	7 cut(s)	15, 84, 169, 184, 713, 728, 860
HpyCH4III	ACNGT	2 cut(s)	98, 477
HpyCH4IV	ACGT	1 cut(s)	871
HpyCH4V	TGCA	3 cut(s)	194, 702, 933
HpyF3I	CTNAG	4 cut(s)	315, 461, 884, 962
HpySE526I	ACGT	1 cut(s)	871
Hsp92I	GRCGYC	4 cut(s)	331, 446, 494, 871
Hsp92II	CATG	2 cut(s)	198, 702
HspAI	GCGC	2 cut(s)	849, 952
Ksp22I	TGATCA	1 cut(s)	793
LmnI	GCTCC	3 cut(s)	104, 547, 763
Lsp1109I	GCAGC	6 cut(s)	293, 296, 523, 526, 596, 599
LweI	GCATC	2 cut(s)	181, 711
MaeI	CTAG	2 cut(s)	557, 863
MaeII	ACGT	1 cut(s)	871
MaeIII	GTNAC	2 cut(s)	63, 902
MboII	GAAGA	2 cut(s)	223, 674
MflI	RGATCY	1 cut(s)	887
MhlI	GDGCHC	2 cut(s)	171, 729
MluCI	AATT	1 cut(s)	32
MmeI	TCCRAC	5 cut(s)	234, 329, 452, 664, 738
Mph1103I	ATGCAT	2 cut(s)	196, 704
MseI	TTAA	1 cut(s)	87
MslI	CAYNNNNRTG	1 cut(s)	938
MspCI	CTTAAG	1 cut(s)	86
MspI	CCGG	6 cut(s)	78, 215, 227, 586, 667, 679
MspR9I	CCNGG	3 cut(s)	215, 680, 813
Mva1269I	GAATGC	1 cut(s)	567
MvaI	CCWGG	1 cut(s)	813
MvnI	CGCG	3 cut(s)	849, 952, 954
NciI	CCSGG	2 cut(s)	215, 680
NlaIII	CATG	2 cut(s)	198, 702
NlaIV	GGNNCC	2 cut(s)	106, 393
NmeAIII	GCCGAG	2 cut(s)	190, 708
NmuCI	GTSAC	1 cut(s)	902
NsiI	ATGCAT	2 cut(s)	196, 704
PcsI	WCGNNNNNNNCGW	1 cut(s)	690
PctI	GAATGC	1 cut(s)	567
PfeI	GAWTC	1 cut(s)	113
PflFI	GACNNNGTC	1 cut(s)	496
PflMI	CCANNNNNTGG	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	811
PspEI	GGTNACC	1 cut(s)	63
PspFI	CCCAGC	2 cut(s)	244, 648
PspGI	CCWGG	1 cut(s)	811
PspN4I	GGNNCC	2 cut(s)	106, 393
PspPI	GGNCC	5 cut(s)	198, 247, 392, 646, 897
PsuI	RGATCY	1 cut(s)	887
PsyI	GACNNNGTC	1 cut(s)	496
RsaI	GTAC	3 cut(s)	311, 468, 826
RsaNI	GTAC	3 cut(s)	310, 467, 825
RseI	CAYNNNNRTG	1 cut(s)	938
SalI	GTCGAC	3 cut(s)	327, 448, 873
SaqAI	TTAA	1 cut(s)	87
Sau96I	GGNCC	5 cut(s)	198, 247, 392, 646, 897
ScrFI	CCNGG	3 cut(s)	215, 680, 813
SduI	GDGCHC	2 cut(s)	171, 729
SfaNI	GCATC	2 cut(s)	181, 711
SfcI	CTRYAG	2 cut(s)	253, 639
SgrDI	CGTCGACG	1 cut(s)	873
SinI	GGWCC	2 cut(s)	392, 897
SmiMI	CAYNNNNRTG	1 cut(s)	938
SmlI	CTYRAG	2 cut(s)	43, 86
SmoI	CTYRAG	2 cut(s)	43, 86
Sse9I	AATT	1 cut(s)	32
SsiI	CCGC	8 cut(s)	68, 273, 276, 279, 581, 615, 618, 621
SspMI	CTAG	2 cut(s)	557, 863
StyD4I	CCNGG	3 cut(s)	213, 678, 811
TaaI	ACNGT	2 cut(s)	98, 477
TaiI	ACGT	1 cut(s)	874
TasI	AATT	1 cut(s)	32
TauI	GCSGC	4 cut(s)	278, 281, 618, 621
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TscAI	CASTG	1 cut(s)	22
TseFI	GTSAC	1 cut(s)	902
TseI	GCWGC	6 cut(s)	281, 284, 536, 539, 609, 612
Tsp45I	GTSAC	1 cut(s)	902
TspGWI	ACGGA	1 cut(s)	297
TspRI	CASTG	1 cut(s)	22
Tth111I	GACNNNGTC	1 cut(s)	496
Van91I	CCANNNNNTGG	1 cut(s)	17
Vha464I	CTTAAG	1 cut(s)	86
VpaK11BI	GGWCC	2 cut(s)	392, 897
XcmI	CCANNNNNNNNNTGG	2 cut(s)	14, 816
XmiI	GTMKAC	3 cut(s)	328, 449, 874
XspI	CTAG	2 cut(s)	557, 863
ZraI	GACGTC	1 cut(s)	872
Zsp2I	ATGCAT	2 cut(s)	196, 704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.