Rmu_sc0005833.1_g000002

DNA repair protein RAD50

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005833.1
OG0031355
Physical Location & Seq
Reverse (-)
14893 .. 16146
1254 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005833.1_g000002.1.cds

Sequence Viewer

Length: 438 bp
atgttccggatatgtttcgtatgttcttactgcagggttgttaccatggagtttgatgacttgagtgccaaatctcgtgaagtggagaaagaggtgaatatgtttcagatgaaaatacaagaagttaataataacctctgtaaacaccgtaaagatctggaatcaaagaggagatatattgaaactagacttcaggccttagatcaacaatgttttactgttgattcctataccaaagtcttggattcagcgaaggagaaaagagatgtgcataaaagatcgggaagaaggactgaaggacgaggctctttaggttcagatcgggtttgggaagaaatggaggctgcggcctctctcggttcagatcaggaagaaggactgaaggaggcggcctctctaagtcttcagatcgggtttgggaagaatggaggctactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000228 GO:0000280 GO:0000722 GO:0000723 GO:0000724 GO:0000725 GO:0000781 GO:0000784 GO:0000785 GO:0000790 GO:0000793 GO:0000794 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003697 GO:0003824 GO:0004017 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006278 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007004 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009123 GO:0009165 GO:0009987 GO:0010833 GO:0016043 GO:0016233 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0022402 GO:0022414 GO:0030870 GO:0031974 GO:0031981 GO:0032200 GO:0032392 GO:0032508 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0035825 GO:0035861 GO:0042162 GO:0042592 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046940 GO:0048285 GO:0050145 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0051880 GO:0055086 GO:0060249 GO:0061982 GO:0065007 GO:0065008 GO:0070013 GO:0070192 GO:0071103 GO:0071704 GO:0071840 GO:0071897 GO:0090304 GO:0090305 GO:0090407 GO:0090734 GO:0097159 GO:0098687 GO:0098847 GO:0140013 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903046
KEGG Pathways
Metabolic & Signaling
ko03440 ko03450 ko04218 map03440 map03450 map04218
Pfam Domains
Protein Families
AAA_23 Rad50_zn_hook

Protein Analysis

145

Amino Acids

16.66

Weight (kDa)

7.61

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031355)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0005833.1_g000002
rosa_samantha Rh4AG339200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 6
AciI CCGC 2 cut(s) 347, 389
AcuI CTGAAG 4 cut(s) 176, 315, 389, 401
AgsI TTSAA 1 cut(s) 182
Aor13HI TCCGGA 1 cut(s) 6
AoxI GGCC 3 cut(s) 195, 348, 390
ApeKI GCWGC 1 cut(s) 344
AsuHPI GGTGA 1 cut(s) 106
BauI CACGAG 1 cut(s) 75
BbsI GAAGAC 1 cut(s) 395
BbvI GCAGC 1 cut(s) 331
BfaI CTAG 1 cut(s) 186
BfmI CTRYAG 1 cut(s) 31
BglII AGATCT 1 cut(s) 154
BisI GCNGC 3 cut(s) 345, 348, 390
BlsI GCNGC 3 cut(s) 346, 349, 391
BpiI GAAGAC 1 cut(s) 395
BplI GAGNNNNNCTC 2 cut(s) 377, 409
BpuEI CTTGAG 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 45
BsaWI WCCGGW 1 cut(s) 6
BseAI TCCGGA 1 cut(s) 6
BseDI CCNNGG 1 cut(s) 45
BseRI GAGGAG 1 cut(s) 184
BseXI GCAGC 1 cut(s) 331
BshFI GGCC 3 cut(s) 197, 350, 392
BsiSI CCGG 1 cut(s) 7
BsnI GGCC 3 cut(s) 197, 350, 392
Bsp13I TCCGGA 1 cut(s) 6
Bsp143I GATC 6 cut(s) 154, 202, 278, 319, 364, 408
Bsp19I CCATGG 1 cut(s) 45
BspACI CCGC 2 cut(s) 347, 389
BspANI GGCC 3 cut(s) 197, 350, 392
BspEI TCCGGA 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 6 cut(s) 154, 202, 278, 319, 364, 408
BssSI CACGAG 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 45
Bst2BI CACGAG 1 cut(s) 75
Bst4CI ACNGT 2 cut(s) 149, 220
BstDEI CTNAG 2 cut(s) 199, 398
BstDSI CCRYGG 1 cut(s) 45
BstKTI GATC 6 cut(s) 157, 205, 281, 322, 367, 411
BstMBI GATC 6 cut(s) 154, 202, 278, 319, 364, 408
BstSFI CTRYAG 1 cut(s) 31
BstV1I GCAGC 1 cut(s) 331
BstV2I GAAGAC 1 cut(s) 395
BstX2I RGATCY 1 cut(s) 154
BstXI CCANNNNNNTGG 1 cut(s) 241
BstYI RGATCY 1 cut(s) 154
BsuRI GGCC 3 cut(s) 197, 350, 392
BtgI CCRYGG 1 cut(s) 45
CviAII CATG 1 cut(s) 46
CviJI RGCY 6 cut(s) 197, 306, 344, 350, 392, 432
CviKI_1 RGCY 6 cut(s) 197, 306, 344, 350, 392, 432
DdeI CTNAG 2 cut(s) 199, 398
DpnI GATC 6 cut(s) 156, 204, 280, 321, 366, 410
DpnII GATC 6 cut(s) 154, 202, 278, 319, 364, 408
Eco130I CCWWGG 1 cut(s) 45
Eco147I AGGCCT 1 cut(s) 197
Eco57I CTGAAG 4 cut(s) 176, 315, 389, 401
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 1 cut(s) 49
FaiI YATR 7 cut(s) 13, 22, 47, 101, 177, 231, 273
FatI CATG 1 cut(s) 45
Fnu4HI GCNGC 3 cut(s) 345, 348, 390
Fsp4HI GCNGC 3 cut(s) 345, 348, 390
FspBI CTAG 1 cut(s) 186
GluI GCNGC 3 cut(s) 345, 348, 390
HaeIII GGCC 3 cut(s) 197, 350, 392
HapII CCGG 1 cut(s) 7
Hin1II CATG 1 cut(s) 49
HinfI GANTC 3 cut(s) 161, 224, 245
HpaII CCGG 1 cut(s) 7
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 143
Hpy188I TCNGA 4 cut(s) 108, 319, 364, 408
Hpy188III TCNNGA 5 cut(s) 7, 77, 158, 282, 368
Hpy8I GTNNAC 1 cut(s) 143
HpyAV CCTTC 5 cut(s) 247, 282, 290, 368, 376
HpyCH4III ACNGT 2 cut(s) 149, 220
HpyCH4V TGCA 2 cut(s) 33, 271
HpyF3I CTNAG 2 cut(s) 199, 398
Hsp92II CATG 1 cut(s) 49
Kpn2I TCCGGA 1 cut(s) 6
Kzo9I GATC 6 cut(s) 154, 202, 278, 319, 364, 408
LpnPI CCDG 5 cut(s) 19, 20, 143, 179, 353
Lsp1109I GCAGC 1 cut(s) 331
MaeI CTAG 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 40
MalI GATC 6 cut(s) 156, 204, 280, 321, 366, 410
MboI GATC 6 cut(s) 154, 202, 278, 319, 364, 408
MboII GAAGA 5 cut(s) 297, 344, 383, 395, 433
MflI RGATCY 1 cut(s) 154
MnlI CCTC 9 cut(s) 85, 146, 162, 296, 334, 361, 379, 403, 422
MroI TCCGGA 1 cut(s) 6
MseI TTAA 1 cut(s) 126
MspI CCGG 1 cut(s) 7
NcoI CCATGG 1 cut(s) 45
NdeII GATC 6 cut(s) 154, 202, 278, 319, 364, 408
NlaIII CATG 1 cut(s) 49
PceI AGGCCT 1 cut(s) 197
PfeI GAWTC 3 cut(s) 161, 224, 245
PkrI GCNGC 3 cut(s) 346, 349, 391
PstI CTGCAG 1 cut(s) 35
PsuI RGATCY 1 cut(s) 154
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 3 cut(s) 345, 348, 390
Sau3AI GATC 6 cut(s) 154, 202, 278, 319, 364, 408
SetI ASST 3 cut(s) 96, 138, 316
SfcI CTRYAG 1 cut(s) 31
SmlI CTYRAG 1 cut(s) 61
SmoI CTYRAG 1 cut(s) 61
SseBI AGGCCT 1 cut(s) 197
SsiI CCGC 2 cut(s) 347, 389
SspMI CTAG 1 cut(s) 186
StuI AGGCCT 1 cut(s) 197
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 2 cut(s) 149, 220
TauI GCSGC 2 cut(s) 350, 392
TfiI GAWTC 3 cut(s) 161, 224, 245
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TseI GCWGC 1 cut(s) 344
TspDTI ATGAA 1 cut(s) 125
XspI CTAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.