Rh4AG339200

DNA repair protein RAD50

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Forward (+)
64839096 .. 64839568
473 bp
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UTR
Exon/CDS
Intron
Rh4AG339200.1

Sequence Viewer

Length: 233 bp
ATGGAGTTTGATGACTTGAGTGCCAAATCTCGTGAAGTGGAGAAAGAGGTGAATATGTTTCAGATGAAAATACAAGAAGTTAATAATAACCTCTGTAAACACCGTAAAGATCTGGAATCAAAGAGGAGATATATTGAAACTAGACTTCAGGCCTTAGATCAACAATGTTTTACTGTTGATTCCTATACCAAAGTCTTGGATTCAGCGAAGGAGAAAAGAGATGTGCATAAAAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000228 GO:0000280 GO:0000722 GO:0000723 GO:0000724 GO:0000725 GO:0000781 GO:0000784 GO:0000785 GO:0000790 GO:0000793 GO:0000794 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003697 GO:0003824 GO:0004017 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006278 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007004 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009123 GO:0009165 GO:0009987 GO:0010833 GO:0016043 GO:0016233 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0022402 GO:0022414 GO:0030870 GO:0031974 GO:0031981 GO:0032200 GO:0032392 GO:0032508 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0035825 GO:0035861 GO:0042162 GO:0042592 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046940 GO:0048285 GO:0050145 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0051880 GO:0055086 GO:0060249 GO:0061982 GO:0065007 GO:0065008 GO:0070013 GO:0070192 GO:0071103 GO:0071704 GO:0071840 GO:0071897 GO:0090304 GO:0090305 GO:0090407 GO:0090734 GO:0097159 GO:0098687 GO:0098847 GO:0140013 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903046
Pfam Domains
Protein Families

Protein Analysis

77

Amino Acids

9.27

Weight (kDa)

7.77

Isoelectric Point (pI)

48.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0031355)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0005833.1_g000002
rosa_samantha Rh4AG339200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 131
AgsI TTSAA 1 cut(s) 137
AoxI GGCC 1 cut(s) 150
AsuHPI GGTGA 1 cut(s) 61
BauI CACGAG 1 cut(s) 30
BfaI CTAG 1 cut(s) 141
BglII AGATCT 1 cut(s) 109
BpuEI CTTGAG 1 cut(s) 37
BseRI GAGGAG 1 cut(s) 139
BshFI GGCC 1 cut(s) 152
BsnI GGCC 1 cut(s) 152
Bsp143I GATC 2 cut(s) 109, 157
BspANI GGCC 1 cut(s) 152
BssMI GATC 2 cut(s) 109, 157
BssSI CACGAG 1 cut(s) 30
Bst2BI CACGAG 1 cut(s) 30
Bst4CI ACNGT 2 cut(s) 104, 175
BstDEI CTNAG 1 cut(s) 154
BstKTI GATC 2 cut(s) 112, 160
BstMBI GATC 2 cut(s) 109, 157
BstX2I RGATCY 1 cut(s) 109
BstXI CCANNNNNNTGG 1 cut(s) 196
BstYI RGATCY 1 cut(s) 109
BsuRI GGCC 1 cut(s) 152
CviJI RGCY 1 cut(s) 152
CviKI_1 RGCY 1 cut(s) 152
DdeI CTNAG 1 cut(s) 154
DpnI GATC 2 cut(s) 111, 159
DpnII GATC 2 cut(s) 109, 157
Eco147I AGGCCT 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 131
FaiI YATR 4 cut(s) 56, 132, 186, 228
FspBI CTAG 1 cut(s) 141
HaeIII GGCC 1 cut(s) 152
HinfI GANTC 3 cut(s) 116, 179, 200
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 1 cut(s) 98
Hpy188I TCNGA 1 cut(s) 63
Hpy188III TCNNGA 2 cut(s) 32, 113
Hpy8I GTNNAC 1 cut(s) 98
HpyAV CCTTC 1 cut(s) 202
HpyCH4III ACNGT 2 cut(s) 104, 175
HpyCH4V TGCA 1 cut(s) 226
HpyF3I CTNAG 1 cut(s) 154
Kzo9I GATC 2 cut(s) 109, 157
LpnPI CCDG 2 cut(s) 98, 134
MaeI CTAG 1 cut(s) 141
MalI GATC 2 cut(s) 111, 159
MboI GATC 2 cut(s) 109, 157
MflI RGATCY 1 cut(s) 109
MnlI CCTC 3 cut(s) 40, 101, 117
MseI TTAA 1 cut(s) 81
NdeII GATC 2 cut(s) 109, 157
PceI AGGCCT 1 cut(s) 152
PfeI GAWTC 3 cut(s) 116, 179, 200
PsuI RGATCY 1 cut(s) 109
SaqAI TTAA 1 cut(s) 81
Sau3AI GATC 2 cut(s) 109, 157
SetI ASST 2 cut(s) 51, 93
SgeI CNNG 8 cut(s) 28, 42, 44, 86, 125, 153, 161, 208
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
SseBI AGGCCT 1 cut(s) 152
SspMI CTAG 1 cut(s) 141
StuI AGGCCT 1 cut(s) 152
TaaI ACNGT 2 cut(s) 104, 175
TfiI GAWTC 3 cut(s) 116, 179, 200
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TspDTI ATGAA 1 cut(s) 80
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.