Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005852.1

Orthogroup ID

OG0025450

Physical Location & Seq

Genomic Coordinates Forward (+)

14944 .. 16885

Gene Structure 1942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005852.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atggaaggtgcaatcttgatccctgcgccgtcctctcctctatcatcaacttctcatccatctgtgattctgacccaagatgaactgaagaaaatcacagcctataaggtcatcgaattcgtcgagtctggcctggttctcgacatcagcacctgctccacgaccaagcataccatcaatcgaatcggcgatctcctccggcaggggaagctccataacattgttggaataaccacctccagaaagaccacgagcaaactgacacggggatgctactgtcggatgcgcgggctgttgcagacagggctggggccgctcgggactgctgcaagctgggatctgcaggtgggaggccgctatgatgcagcgatgggagatggcctggcttgcgggctgatgcgcacaggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004751 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0008219 GO:0009791 GO:0009987 GO:0010228 GO:0016853 GO:0016860 GO:0016861 GO:0022414 GO:0032501 GO:0032502 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

136

Amino Acids

14.46

Weight (kDa)

9.23

Isoelectric Point (pI)

36.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025450)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005852.1_g000007 Rmu_ssc0000112.1_g000017
rosa_samantha	Rh6AG414800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	161, 334
Acc16I	TGCGCA	1 cut(s)	401
Acc36I	ACCTGC	2 cut(s)	161, 334
AccBSI	CCGCTC	1 cut(s)	316
AccII	CGCG	1 cut(s)	288
AciI	CCGC	4 cut(s)	288, 314, 355, 390
AclWI	GGATC	2 cut(s)	13, 345
AcsI	RAATTY	1 cut(s)	116
AcuI	CTGAAG	1 cut(s)	107
AfiI	CCNNNNNNNGG	1 cut(s)	202
AjnI	CCWGG	2 cut(s)	132, 381
AluBI	AGCT	2 cut(s)	211, 333
AluI	AGCT	2 cut(s)	211, 333
AlwI	GGATC	2 cut(s)	13, 345
AlwNI	CAGNNNCTG	1 cut(s)	153
Ama87I	CYCGRG	1 cut(s)	317
AoxI	GGCC	4 cut(s)	130, 311, 352, 379
ApeKI	GCWGC	2 cut(s)	326, 365
ApoI	RAATTY	1 cut(s)	116
AspLEI	GCGC	3 cut(s)	28, 288, 402
AspS9I	GGNCC	1 cut(s)	311
AvaI	CYCGRG	1 cut(s)	317
BauI	CACGAG	1 cut(s)	250
BbvI	GCAGC	2 cut(s)	313, 377
BccI	CCATC	4 cut(s)	67, 182, 364, 371
BceAI	ACGGC	1 cut(s)	13
BciT130I	CCWGG	2 cut(s)	134, 383
BfmI	CTRYAG	1 cut(s)	341
BfuAI	ACCTGC	2 cut(s)	161, 334
BisI	GCNGC	4 cut(s)	314, 327, 355, 366
BlsI	GCNGC	4 cut(s)	315, 328, 356, 367
Bme1390I	CCNGG	2 cut(s)	134, 383
BmeT110I	CYCGRG	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	311
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	2 cut(s)	134, 383
BmsI	GCATC	4 cut(s)	260, 273, 352, 387
BpmI	CTGGAG	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
BseBI	CCWGG	2 cut(s)	134, 383
BseGI	GGATG	3 cut(s)	55, 275, 288
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseRI	GAGGAG	2 cut(s)	27, 185
BseXI	GCAGC	2 cut(s)	313, 377
BseYI	CCCAGC	2 cut(s)	307, 333
Bsh1236I	CGCG	1 cut(s)	288
BshFI	GGCC	4 cut(s)	132, 313, 354, 381
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	1 cut(s)	199
BslFI	GGGAC	1 cut(s)	334
BslI	CCNNNNNNNGG	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	334
BsnI	GGCC	4 cut(s)	132, 313, 354, 381
BsoBI	CYCGRG	1 cut(s)	317
Bsp143I	GATC	3 cut(s)	18, 190, 337
BspACI	CCGC	4 cut(s)	288, 314, 355, 390
BspANI	GGCC	4 cut(s)	132, 313, 354, 381
BspFNI	CGCG	1 cut(s)	288
BspLI	GGNNCC	1 cut(s)	312
BspMAI	CTGCAG	1 cut(s)	345
BspMI	ACCTGC	2 cut(s)	161, 334
BspPI	GGATC	2 cut(s)	13, 345
BsrBI	CCGCTC	1 cut(s)	316
BssMI	GATC	3 cut(s)	18, 190, 337
BssSI	CACGAG	1 cut(s)	250
Bst2BI	CACGAG	1 cut(s)	250
Bst2UI	CCWGG	2 cut(s)	134, 383
Bst4CI	ACNGT	1 cut(s)	278
BstC8I	GCNNGC	4 cut(s)	290, 331, 388, 392
BstENI	CCTNNNNNAGG	1 cut(s)	200
BstF5I	GGATG	3 cut(s)	55, 275, 288
BstFNI	CGCG	1 cut(s)	288
BstHHI	GCGC	3 cut(s)	28, 288, 402
BstKTI	GATC	3 cut(s)	21, 193, 340
BstMBI	GATC	3 cut(s)	18, 190, 337
BstMWI	GCNNNNNNNGC	4 cut(s)	208, 304, 313, 387
BstNI	CCWGG	2 cut(s)	134, 383
BstSCI	CCNGG	2 cut(s)	132, 381
BstSFI	CTRYAG	1 cut(s)	341
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	2 cut(s)	313, 377
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BsuRI	GGCC	4 cut(s)	132, 313, 354, 381
BtgZI	GCGATG	1 cut(s)	383
BtsCI	GGATG	3 cut(s)	55, 275, 288
BveI	ACCTGC	2 cut(s)	161, 334
Cac8I	GCNNGC	4 cut(s)	290, 331, 388, 392
CaiI	CAGNNNCTG	1 cut(s)	153
CfoI	GCGC	3 cut(s)	28, 288, 402
Cfr13I	GGNCC	1 cut(s)	311
DpnI	GATC	3 cut(s)	20, 192, 339
DpnII	GATC	3 cut(s)	18, 190, 337
Eco57I	CTGAAG	1 cut(s)	107
Eco88I	CYCGRG	1 cut(s)	317
EcoNI	CCTNNNNNAGG	1 cut(s)	200
EcoRI	GAATTC	1 cut(s)	116
EcoRII	CCWGG	2 cut(s)	132, 381
FaiI	YATR	4 cut(s)	105, 171, 216, 360
FaqI	GGGAC	1 cut(s)	334
FauI	CCCGC	2 cut(s)	281, 383
Fnu4HI	GCNGC	4 cut(s)	314, 327, 355, 366
FokI	GGATG	3 cut(s)	42, 282, 295
Fsp4HI	GCNGC	4 cut(s)	314, 327, 355, 366
FspAI	RTGCGCAY	1 cut(s)	401
FspI	TGCGCA	1 cut(s)	401
GlaI	GCGC	3 cut(s)	27, 287, 401
GluI	GCNGC	4 cut(s)	314, 327, 355, 366
GsaI	CCCAGC	2 cut(s)	311, 337
GsuI	CTGGAG	1 cut(s)	223
HaeIII	GGCC	4 cut(s)	132, 313, 354, 381
HapII	CCGG	1 cut(s)	199
HhaI	GCGC	3 cut(s)	28, 288, 402
Hin6I	GCGC	3 cut(s)	26, 286, 400
HinP1I	GCGC	3 cut(s)	26, 286, 400
HinfI	GANTC	3 cut(s)	67, 125, 183
HpaII	CCGG	1 cut(s)	199
Hpy188I	TCNGA	2 cut(s)	72, 282
Hpy188III	TCNNGA	4 cut(s)	16, 140, 240, 319
Hpy99I	CGWCG	1 cut(s)	125
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4V	TGCA	5 cut(s)	11, 298, 329, 343, 365
HpyF10VI	GCNNNNNNNGC	4 cut(s)	208, 304, 313, 387
HspAI	GCGC	3 cut(s)	26, 286, 400
Kzo9I	GATC	3 cut(s)	18, 190, 337
LmnI	GCTCC	2 cut(s)	161, 216
Lsp1109I	GCAGC	2 cut(s)	313, 377
LweI	GCATC	4 cut(s)	260, 273, 352, 387
MalI	GATC	3 cut(s)	20, 192, 339
MbiI	CCGCTC	1 cut(s)	316
MboI	GATC	3 cut(s)	18, 190, 337
MboII	GAAGA	1 cut(s)	100
MflI	RGATCY	1 cut(s)	337
MluCI	AATT	1 cut(s)	116
MlyI	GAGTC	1 cut(s)	134
MmeI	TCCRAC	2 cut(s)	205, 260
MnlI	CCTC	5 cut(s)	43, 48, 206, 247, 344
MslI	CAYNNNNRTG	1 cut(s)	268
MspI	CCGG	1 cut(s)	199
MspR9I	CCNGG	2 cut(s)	134, 383
MvaI	CCWGG	2 cut(s)	134, 383
MvnI	CGCG	1 cut(s)	288
MwoI	GCNNNNNNNGC	4 cut(s)	208, 304, 313, 387
NdeII	GATC	3 cut(s)	18, 190, 337
NlaIV	GGNNCC	1 cut(s)	312
NsbI	TGCGCA	1 cut(s)	401
PaqCI	CACCTGC	2 cut(s)	161, 334
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PfeI	GAWTC	2 cut(s)	67, 183
PkrI	GCNGC	4 cut(s)	315, 328, 356, 367
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
Psp6I	CCWGG	2 cut(s)	132, 381
PspFI	CCCAGC	2 cut(s)	307, 333
PspGI	CCWGG	2 cut(s)	132, 381
PspN4I	GGNNCC	1 cut(s)	312
PspPI	GGNCC	1 cut(s)	311
PstI	CTGCAG	1 cut(s)	345
PstNI	CAGNNNCTG	1 cut(s)	153
PsuI	RGATCY	1 cut(s)	337
RseI	CAYNNNNRTG	1 cut(s)	268
SatI	GCNGC	4 cut(s)	314, 327, 355, 366
Sau3AI	GATC	3 cut(s)	18, 190, 337
Sau96I	GGNCC	1 cut(s)	311
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	2 cut(s)	134, 383
SetI	ASST	8 cut(s)	10, 111, 155, 213, 239, 335, 348, 409
SfaNI	GCATC	4 cut(s)	260, 273, 352, 387
SfcI	CTRYAG	1 cut(s)	341
SmiMI	CAYNNNNRTG	1 cut(s)	268
Sse9I	AATT	1 cut(s)	116
SsiI	CCGC	4 cut(s)	288, 314, 355, 390
StyD4I	CCNGG	2 cut(s)	132, 381
TaaI	ACNGT	1 cut(s)	278
TaqI	TCGA	4 cut(s)	114, 123, 141, 181
TasI	AATT	1 cut(s)	116
TauI	GCSGC	2 cut(s)	316, 357
TfiI	GAWTC	2 cut(s)	67, 183
TseI	GCWGC	2 cut(s)	326, 365
TspDTI	ATGAA	1 cut(s)	96
XagI	CCTNNNNNAGG	1 cut(s)	200
XapI	RAATTY	1 cut(s)	116
XcmI	CCANNNNNNNNNTGG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.