Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0025450

Physical Location & Seq

Genomic Coordinates Reverse (-)

61001353 .. 61002522

Gene Structure 1170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG414800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAGCTCCTATGAGTTAATGACTTCCGGGTCGGACCGTCGGCGGCAGACAGATCCTCGACATTCAACAGCTCCTAGGATTTCCCCCAATGTCGGTTGCCCCCATTTTTCTGGGTTCACCGATTTAACCATGGAAGGTGCAATCTTGGTCCCTACGCCGTCCTCTCCTCTATCATCAACTTCTCATCCATCTGTGATTCTGACCCAAGATGAACTGAAGAAAATCACAGCCTATAAGGCCGTCGAATTCGTCGAGTCTAGCCTGGTTCTCGGCATCGGCACCTACTCCACGACCAAGCATACCATCAATCGAATTGGCGATCTCCTCCGGCAGGGGAAGCTCCATAACATTGTTAGAATATCCACCTCCAGAAAGACCACGAGCAAACTATCTTCTTTTTCTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004751 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0008219 GO:0009791 GO:0009987 GO:0010228 GO:0016853 GO:0016860 GO:0016861 GO:0022414 GO:0032501 GO:0032502 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

135

Amino Acids

14.8

Weight (kDa)

9.84

Isoelectric Point (pI)

49.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025450)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005852.1_g000007 Rmu_ssc0000112.1_g000017
rosa_samantha	Rh6AG414800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	28
AccB1I	GGYRCC	1 cut(s)	278
AciI	CCGC	1 cut(s)	43
AclWI	GGATC	1 cut(s)	47
AcsI	RAATTY	1 cut(s)	245
AcuI	CTGAAG	1 cut(s)	236
AfiI	CCNNNNNNNGG	2 cut(s)	92, 331
AgsI	TTSAA	1 cut(s)	66
AjnI	CCWGG	1 cut(s)	261
AluBI	AGCT	3 cut(s)	6, 71, 340
AluI	AGCT	3 cut(s)	6, 71, 340
Alw21I	GWGCWC	1 cut(s)	8
AlwI	GGATC	1 cut(s)	47
AoxI	GGCC	1 cut(s)	237
ApoI	RAATTY	1 cut(s)	245
AspA2I	CCTAGG	1 cut(s)	74
AspS9I	GGNCC	2 cut(s)	34, 148
AsuC2I	CCSGG	1 cut(s)	28
AsuHPI	GGTGA	1 cut(s)	109
AvaII	GGWCC	2 cut(s)	34, 148
AvrII	CCTAGG	1 cut(s)	74
BanI	GGYRCC	1 cut(s)	278
BanII	GRGCYC	1 cut(s)	8
BauI	CACGAG	1 cut(s)	379
Bbv12I	GWGCWC	1 cut(s)	8
BccI	CCATC	2 cut(s)	196, 311
BceAI	ACGGC	2 cut(s)	142, 224
BciT130I	CCWGG	1 cut(s)	263
BcnI	CCSGG	1 cut(s)	28
BfaI	CTAG	2 cut(s)	75, 258
BglI	GCCNNNNNGGC	1 cut(s)	236
BisI	GCNGC	1 cut(s)	44
BlnI	CCTAGG	1 cut(s)	74
BlsI	GCNGC	1 cut(s)	45
Bme1390I	CCNGG	2 cut(s)	28, 263
Bme18I	GGWCC	2 cut(s)	34, 148
BmgT120I	GGNCC	2 cut(s)	34, 148
BmiI	GGNNCC	2 cut(s)	150, 280
BmrFI	CCNGG	2 cut(s)	28, 263
BmsI	GCATC	1 cut(s)	282
BpmI	CTGGAG	1 cut(s)	352
BpuMI	CCSGG	1 cut(s)	28
BsaJI	CCNNGG	2 cut(s)	74, 129
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 331
BseBI	CCWGG	1 cut(s)	263
BseDI	CCNNGG	2 cut(s)	74, 129
BseGI	GGATG	1 cut(s)	184
BseLI	CCNNNNNNNGG	2 cut(s)	92, 331
BseRI	GAGGAG	2 cut(s)	156, 314
BshFI	GGCC	1 cut(s)	239
BshNI	GGYRCC	1 cut(s)	278
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	2 cut(s)	27, 328
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	2 cut(s)	92, 331
BsmFI	GGGAC	1 cut(s)	134
BsnI	GGCC	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	52, 319
Bsp19I	CCATGG	1 cut(s)	129
BspACI	CCGC	1 cut(s)	43
BspANI	GGCC	1 cut(s)	239
BspLI	GGNNCC	2 cut(s)	150, 280
BspPI	GGATC	1 cut(s)	47
BspT107I	GGYRCC	1 cut(s)	278
BssECI	CCNNGG	2 cut(s)	74, 129
BssMI	GATC	2 cut(s)	52, 319
BssSI	CACGAG	1 cut(s)	379
BssT1I	CCWWGG	2 cut(s)	74, 129
Bst2BI	CACGAG	1 cut(s)	379
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	1 cut(s)	38
BstDSI	CCRYGG	1 cut(s)	129
BstENI	CCTNNNNNAGG	1 cut(s)	329
BstF5I	GGATG	1 cut(s)	184
BstKTI	GATC	2 cut(s)	55, 322
BstMBI	GATC	2 cut(s)	52, 319
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 337
BstNI	CCWGG	1 cut(s)	263
BstSCI	CCNGG	2 cut(s)	26, 261
BstX2I	RGATCY	1 cut(s)	52
BstXI	CCANNNNNNTGG	1 cut(s)	110
BstYI	RGATCY	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	239
BtgI	CCRYGG	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	184
Cfr13I	GGNCC	2 cut(s)	34, 148
CpoI	CGGWCCG	1 cut(s)	34
CspI	CGGWCCG	1 cut(s)	34
CviAII	CATG	1 cut(s)	130
CviJI	RGCY	6 cut(s)	6, 71, 230, 239, 261, 340
CviKI_1	RGCY	6 cut(s)	6, 71, 230, 239, 261, 340
DpnI	GATC	2 cut(s)	54, 321
DpnII	GATC	2 cut(s)	52, 319
DrdI	GACNNNNNNGTC	1 cut(s)	28
DseDI	GACNNNNNNGTC	1 cut(s)	28
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	2 cut(s)	74, 129
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	2 cut(s)	34, 148
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	236
EcoICRI	GAGCTC	1 cut(s)	6
EcoNI	CCTNNNNNAGG	1 cut(s)	329
EcoRI	GAATTC	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	261
EcoT14I	CCWWGG	2 cut(s)	74, 129
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	2 cut(s)	74, 129
FaeI	CATG	1 cut(s)	133
FaiI	YATR	5 cut(s)	12, 131, 234, 300, 345
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	44
FokI	GGATG	1 cut(s)	171
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	44
FspBI	CTAG	2 cut(s)	75, 258
GluI	GCNGC	1 cut(s)	44
GsuI	CTGGAG	1 cut(s)	352
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	2 cut(s)	27, 328
Hin1II	CATG	1 cut(s)	133
HinfI	GANTC	2 cut(s)	196, 254
HpaII	CCGG	2 cut(s)	27, 328
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188I	TCNGA	2 cut(s)	34, 201
Hpy188III	TCNNGA	1 cut(s)	369
Hpy8I	GTNNAC	1 cut(s)	117
Hpy99I	CGWCG	3 cut(s)	42, 245, 254
HpyAV	CCTTC	1 cut(s)	128
HpyCH4III	ACNGT	1 cut(s)	38
HpyCH4V	TGCA	1 cut(s)	140
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 337
Hsp92II	CATG	1 cut(s)	133
Kzo9I	GATC	2 cut(s)	52, 319
LmnI	GCTCC	3 cut(s)	11, 76, 345
LpnPI	CCDG	7 cut(s)	40, 96, 248, 275, 317, 341, 382
LweI	GCATC	1 cut(s)	282
MaeI	CTAG	2 cut(s)	75, 258
MalI	GATC	2 cut(s)	54, 321
MboI	GATC	2 cut(s)	52, 319
MboII	GAAGA	2 cut(s)	229, 384
MflI	RGATCY	1 cut(s)	52
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	2 cut(s)	245, 312
MlyI	GAGTC	1 cut(s)	263
MmeI	TCCRAC	1 cut(s)	12
MnlI	CCTC	5 cut(s)	66, 172, 177, 335, 376
MseI	TTAA	3 cut(s)	17, 125, 406
MspI	CCGG	2 cut(s)	27, 328
MspR9I	CCNGG	2 cut(s)	28, 263
MvaI	CCWGG	1 cut(s)	263
MwoI	GCNNNNNNNGC	2 cut(s)	236, 337
NciI	CCSGG	1 cut(s)	28
NcoI	CCATGG	1 cut(s)	129
NdeII	GATC	2 cut(s)	52, 319
NlaIII	CATG	1 cut(s)	133
NlaIV	GGNNCC	2 cut(s)	150, 280
NmeAIII	GCCGAG	1 cut(s)	249
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PfeI	GAWTC	1 cut(s)	196
PkrI	GCNGC	1 cut(s)	45
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	2 cut(s)	150, 280
PspPI	GGNCC	2 cut(s)	34, 148
PsuI	RGATCY	1 cut(s)	52
Rsr2I	CGGWCCG	1 cut(s)	34
RsrII	CGGWCCG	1 cut(s)	34
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	3 cut(s)	17, 125, 406
SatI	GCNGC	1 cut(s)	44
Sau3AI	GATC	2 cut(s)	52, 319
Sau96I	GGNCC	2 cut(s)	34, 148
SchI	GAGTC	1 cut(s)	263
ScrFI	CCNGG	2 cut(s)	28, 263
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	6 cut(s)	8, 73, 139, 284, 342, 368
SfaNI	GCATC	1 cut(s)	282
SinI	GGWCC	2 cut(s)	34, 148
Sse9I	AATT	2 cut(s)	245, 312
SsiI	CCGC	1 cut(s)	43
SspMI	CTAG	2 cut(s)	75, 258
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	2 cut(s)	26, 261
StyI	CCWWGG	2 cut(s)	74, 129
TaaI	ACNGT	1 cut(s)	38
TaqI	TCGA	4 cut(s)	58, 243, 252, 310
TasI	AATT	2 cut(s)	245, 312
TauI	GCSGC	1 cut(s)	46
TfiI	GAWTC	1 cut(s)	196
Tru1I	TTAA	3 cut(s)	17, 125, 406
Tru9I	TTAA	3 cut(s)	17, 125, 406
TspDTI	ATGAA	1 cut(s)	225
VpaK11BI	GGWCC	2 cut(s)	34, 148
XagI	CCTNNNNNAGG	1 cut(s)	329
XapI	RAATTY	1 cut(s)	245
XmaJI	CCTAGG	1 cut(s)	74
XspI	CTAG	2 cut(s)	75, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.