Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005873.1

Orthogroup ID

OG0031356

Physical Location & Seq

Genomic Coordinates Forward (+)

20763 .. 22017

Gene Structure 1255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005873.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgtggacagcttatgggaagtttgttagagaactttgtgatttgcctcttgccgaggacatccccattgcattcaatagtgtgcgaagagggatgcgctctctcaactggagagcggataaaccatcaacactctaccgggttgagaccgaagatgaaggagatgcgaaagtggaagtttctccatgtgatattgtttatacacagcctgctgaaccactagaaggtgaagatccaacaatcttacacaaacttgatctccgttatggtccccgcatcctgttcgataggtcatcggaagatgtgtactccgatcctggctctcccatgctgcggagaactcctgctggcacatatgtgcttgcaaaagtgaagaaagaaaatgatgaaggcacttatttactactgaatggaaatggtgctaccccagaggggaatatccctttccttgttgtaggagaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S9

Protein Analysis

154

Amino Acids

17.25

Weight (kDa)

4.76

Isoelectric Point (pI)

39.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031356)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0005873.1_g000010
rosa_samantha	Rh7AG498300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	116
AciI	CCGC	3 cut(s)	116, 274, 334
AclWI	GGATC	2 cut(s)	227, 308
AfaI	GTAC	1 cut(s)	308
AfiI	CCNNNNNNNGG	3 cut(s)	224, 333, 432
AgsI	TTSAA	1 cut(s)	76
AjnI	CCWGG	1 cut(s)	316
AleI	CACNNNNGTG	1 cut(s)	356
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
Alw26I	GTCTC	1 cut(s)	140
AlwI	GGATC	2 cut(s)	227, 308
ApeKI	GCWGC	1 cut(s)	331
AspLEI	GCGC	1 cut(s)	99
AspS9I	GGNCC	1 cut(s)	269
AsuC2I	CCSGG	1 cut(s)	140
AsuHPI	GGTGA	1 cut(s)	239
AvaII	GGWCC	1 cut(s)	269
BbvI	GCAGC	1 cut(s)	318
BccI	CCATC	1 cut(s)	133
BcgI	CGANNNNNNTGC	2 cut(s)	265, 299
BciT130I	CCWGG	1 cut(s)	318
BcnI	CCSGG	1 cut(s)	140
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	1 cut(s)	221
BisI	GCNGC	1 cut(s)	332
BlsI	GCNGC	1 cut(s)	333
Bme1390I	CCNGG	2 cut(s)	140, 318
Bme18I	GGWCC	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	269
BmiI	GGNNCC	1 cut(s)	271
BmrFI	CCNGG	2 cut(s)	140, 318
BmsI	GCATC	3 cut(s)	84, 154, 285
BpmI	CTGGAG	1 cut(s)	130
BpuMI	CCSGG	1 cut(s)	140
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	54
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bsc4I	CCNNNNNNNGG	3 cut(s)	224, 333, 432
Bse1I	ACTGG	1 cut(s)	113
Bse3DI	GCAATG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	3 cut(s)	60, 99, 276
BseLI	CCNNNNNNNGG	3 cut(s)	224, 333, 432
BseMI	GCAATG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	113
BseXI	GCAGC	1 cut(s)	318
BsiSI	CCGG	1 cut(s)	139
BslFI	GGGAC	1 cut(s)	255
BslI	CCNNNNNNNGG	3 cut(s)	224, 333, 432
BsmAI	GTCTC	1 cut(s)	140
BsmFI	GGGAC	1 cut(s)	255
BsmI	GAATGC	1 cut(s)	71
Bso31I	GGTCTC	1 cut(s)	140
Bsp143I	GATC	3 cut(s)	232, 256, 313
BspACI	CCGC	3 cut(s)	116, 274, 334
BspLI	GGNNCC	1 cut(s)	271
BspPI	GGATC	2 cut(s)	227, 308
BspTNI	GGTCTC	1 cut(s)	140
BsrBI	CCGCTC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	113
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	3 cut(s)	232, 256, 313
Bst2UI	CCWGG	1 cut(s)	318
Bst6I	CTCTTC	1 cut(s)	82
BstC8I	GCNNGC	3 cut(s)	210, 349, 363
BstF5I	GGATG	3 cut(s)	60, 99, 276
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	3 cut(s)	235, 259, 316
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	3 cut(s)	232, 256, 313
BstNI	CCWGG	1 cut(s)	318
BstSCI	CCNGG	2 cut(s)	138, 316
BstV1I	GCAGC	1 cut(s)	318
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BtsCI	GGATG	3 cut(s)	60, 99, 276
Cac8I	GCNNGC	3 cut(s)	210, 349, 363
CfoI	GCGC	1 cut(s)	99
Cfr13I	GGNCC	1 cut(s)	269
Csp6I	GTAC	1 cut(s)	307
CviAII	CATG	2 cut(s)	186, 328
CviJI	RGCY	3 cut(s)	11, 208, 321
CviKI_1	RGCY	3 cut(s)	11, 208, 321
CviQI	GTAC	1 cut(s)	307
DpnI	GATC	3 cut(s)	234, 258, 315
DpnII	GATC	3 cut(s)	232, 256, 313
Eam1104I	CTCTTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	82
Eco31I	GGTCTC	1 cut(s)	140
Eco47I	GGWCC	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	316
FaeI	CATG	2 cut(s)	189, 331
FaiI	YATR	7 cut(s)	15, 187, 201, 267, 329, 355, 357
FaqI	GGGAC	1 cut(s)	255
FatI	CATG	2 cut(s)	185, 327
FauI	CCCGC	1 cut(s)	281
FauNDI	CATATG	1 cut(s)	355
Fnu4HI	GCNGC	1 cut(s)	332
FokI	GGATG	3 cut(s)	47, 106, 263
Fsp4HI	GCNGC	1 cut(s)	332
FspBI	CTAG	1 cut(s)	221
GlaI	GCGC	1 cut(s)	98
GluI	GCNGC	1 cut(s)	332
GsuI	CTGGAG	1 cut(s)	130
HapII	CCGG	1 cut(s)	139
HhaI	GCGC	1 cut(s)	99
Hin1II	CATG	2 cut(s)	189, 331
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HpaII	CCGG	1 cut(s)	139
HphI	GGTGA	1 cut(s)	239
Hpy166II	GTNNAC	2 cut(s)	6, 307
Hpy188I	TCNGA	2 cut(s)	298, 313
Hpy8I	GTNNAC	2 cut(s)	6, 307
HpyAV	CCTTC	3 cut(s)	152, 218, 383
HpyCH4V	TGCA	2 cut(s)	71, 365
Hsp92II	CATG	2 cut(s)	189, 331
HspAI	GCGC	1 cut(s)	97
Kzo9I	GATC	3 cut(s)	232, 256, 313
LpnPI	CCDG	9 cut(s)	94, 152, 222, 293, 303, 330, 333, 357, 441
Lsp1109I	GCAGC	1 cut(s)	318
LweI	GCATC	3 cut(s)	84, 154, 285
MaeI	CTAG	1 cut(s)	221
MalI	GATC	3 cut(s)	234, 258, 315
MbiI	CCGCTC	1 cut(s)	116
MboI	GATC	3 cut(s)	232, 256, 313
MboII	GAAGA	5 cut(s)	99, 164, 242, 311, 385
MflI	RGATCY	1 cut(s)	232
MmeI	TCCRAC	1 cut(s)	260
MnlI	CCTC	4 cut(s)	49, 57, 83, 424
MslI	CAYNNNNRTG	1 cut(s)	356
MspI	CCGG	1 cut(s)	139
MspR9I	CCNGG	2 cut(s)	140, 318
Mva1269I	GAATGC	1 cut(s)	71
MvaI	CCWGG	1 cut(s)	318
NciI	CCSGG	1 cut(s)	140
NdeI	CATATG	1 cut(s)	355
NdeII	GATC	3 cut(s)	232, 256, 313
NlaIII	CATG	2 cut(s)	189, 331
NlaIV	GGNNCC	1 cut(s)	271
NmeAIII	GCCGAG	1 cut(s)	79
OliI	CACNNNNGTG	1 cut(s)	356
PctI	GAATGC	1 cut(s)	71
PkrI	GCNGC	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	1 cut(s)	271
PspPI	GGNCC	1 cut(s)	269
PsuI	RGATCY	1 cut(s)	232
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
RseI	CAYNNNNRTG	1 cut(s)	356
SatI	GCNGC	1 cut(s)	332
Sau3AI	GATC	3 cut(s)	232, 256, 313
Sau96I	GGNCC	1 cut(s)	269
ScrFI	CCNGG	2 cut(s)	140, 318
SetI	ASST	3 cut(s)	13, 229, 293
SfaNI	GCATC	3 cut(s)	84, 154, 285
SinI	GGWCC	1 cut(s)	269
SmiMI	CAYNNNNRTG	1 cut(s)	356
SsiI	CCGC	3 cut(s)	116, 274, 334
SspMI	CTAG	1 cut(s)	221
StyD4I	CCNGG	2 cut(s)	138, 316
TaqI	TCGA	1 cut(s)	285
TaqII	GACCGA	1 cut(s)	164
TatI	WGTACW	1 cut(s)	306
TseI	GCWGC	1 cut(s)	331
TspDTI	ATGAA	2 cut(s)	171, 402
TspGWI	ACGGA	1 cut(s)	251
VpaK11BI	GGWCC	1 cut(s)	269
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.