Rmu_sc0005888.1_g000008

Frigida-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005888.1
OG0020332
Physical Location & Seq
Reverse (-)
49011 .. 49559
549 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 549 bp
atggactcgcttcagttgaagccaactgctagagacttgcagttgttgatgagttaccagttgacgagacacgatctcatcgtaagccaagtctcagctgctcttcgagcatcagaagacccagcacaactagttctgaatgcaatgaaagggttttacccttcgaattctcttggggatggcagtgaggcagattttgatacgatcgtcatcattcgaaggagttgcatttctctgttagaggagttgaagaaaatgagaccggaagtcacgcctagggtgagagaagaagcgatgaggttggcgtgtgattggaaggccaagatgatgatagcggctgagaattggttggaggctctaggattcttgctgcttttgacaactcatggcttgaccttttcttttaatttgacggagcttcagactctcctccttatatttgactgcagtcagctgaattatgccgataccttagcatcatatttaaggcaccaggttgttaaggataatattataacaagcgtaaaagaagctgctataaaattgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

182

Amino Acids

20.52

Weight (kDa)

5.63

Isoelectric Point (pI)

49.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 12 - 148 1.4e-25 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020332)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g04270 FvH4_6g04270 FvH4_6g04270
rosa_multiflora Rmu_sc0005888.1_g000008
rosa_rugosa Rorug02G0644400.1 Rorug02G0646100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 515
AccB1I GGYRCC 1 cut(s) 489
AciI CCGC 1 cut(s) 335
AcsI RAATTY 1 cut(s) 166
AcuI CTGAAG 1 cut(s) 404
AgsI TTSAA 2 cut(s) 19, 250
AhdI GACNNNNNGTC 1 cut(s) 266
AhlI ACTAGT 1 cut(s) 130
AjnI CCWGG 1 cut(s) 492
AluBI AGCT 4 cut(s) 98, 418, 454, 533
AluI AGCT 4 cut(s) 98, 418, 454, 533
Alw26I GTCTC 4 cut(s) 27, 61, 97, 253
AoxI GGCC 1 cut(s) 318
ApeKI GCWGC 3 cut(s) 98, 370, 533
ApoI RAATTY 1 cut(s) 166
AspA2I CCTAGG 1 cut(s) 275
AsuHPI GGTGA 1 cut(s) 292
AsuII TTCGAA 2 cut(s) 164, 217
AvrII CCTAGG 1 cut(s) 275
BaeI ACNNNNGTAYC 2 cut(s) 192, 225
BanI GGYRCC 1 cut(s) 489
BbsI GAAGAC 1 cut(s) 123
BbvI GCAGC 3 cut(s) 85, 357, 520
BccI CCATC 1 cut(s) 173
BcgI CGANNNNNNTGC 2 cut(s) 207, 241
BciT130I CCWGG 1 cut(s) 494
BcoDI GTCTC 4 cut(s) 27, 61, 97, 253
BcuI ACTAGT 1 cut(s) 130
BfaI CTAG 4 cut(s) 30, 131, 276, 359
BfmI CTRYAG 1 cut(s) 445
BisI GCNGC 4 cut(s) 99, 336, 371, 534
BlnI CCTAGG 1 cut(s) 275
BlsI GCNGC 4 cut(s) 100, 337, 372, 535
Bme1390I CCNGG 1 cut(s) 494
BmeRI GACNNNNNGTC 1 cut(s) 266
BmiI GGNNCC 1 cut(s) 491
BmrFI CCNGG 1 cut(s) 494
BmsI GCATC 2 cut(s) 119, 485
BoxI GACNNNNGTC 1 cut(s) 447
BpiI GAAGAC 1 cut(s) 123
Bpu10I CCTNAGC 1 cut(s) 472
Bpu14I TTCGAA 2 cut(s) 164, 217
BsaBI GATNNNNATC 1 cut(s) 209
BsaI GGTCTC 1 cut(s) 253
BsaJI CCNNGG 1 cut(s) 275
BsaWI WCCGGW 1 cut(s) 262
Bse1I ACTGG 1 cut(s) 58
Bse3DI GCAATG 1 cut(s) 150
Bse8I GATNNNNATC 1 cut(s) 209
BseBI CCWGG 1 cut(s) 494
BseDI CCNNGG 1 cut(s) 275
BseGI GGATG 1 cut(s) 184
BseJI GATNNNNATC 1 cut(s) 209
BseMI GCAATG 1 cut(s) 150
BseMII CTCAG 2 cut(s) 108, 330
BseNI ACTGG 1 cut(s) 58
BseRI GAGGAG 2 cut(s) 257, 419
BseXI GCAGC 3 cut(s) 85, 357, 520
BseYI CCCAGC 1 cut(s) 121
Bsh1285I CGRYCG 1 cut(s) 207
BshFI GGCC 1 cut(s) 320
BshNI GGYRCC 1 cut(s) 489
BsiEI CGRYCG 1 cut(s) 207
BsiSI CCGG 1 cut(s) 263
BsmAI GTCTC 4 cut(s) 27, 61, 97, 253
BsmI GAATGC 1 cut(s) 145
BsnI GGCC 1 cut(s) 320
Bso31I GGTCTC 1 cut(s) 253
Bsp119I TTCGAA 2 cut(s) 164, 217
Bsp143I GATC 2 cut(s) 73, 204
BspACI CCGC 1 cut(s) 335
BspANI GGCC 1 cut(s) 320
BspCNI CTCAG 2 cut(s) 107, 331
BspLI GGNNCC 1 cut(s) 491
BspMAI CTGCAG 1 cut(s) 449
BspQI GCTCTTC 1 cut(s) 108
BspT104I TTCGAA 2 cut(s) 164, 217
BspT107I GGYRCC 1 cut(s) 489
BspTNI GGTCTC 1 cut(s) 253
BsrDI GCAATG 1 cut(s) 150
BsrI ACTGG 1 cut(s) 58
BssECI CCNNGG 1 cut(s) 275
BssMI GATC 2 cut(s) 73, 204
BssT1I CCWWGG 1 cut(s) 275
Bst2UI CCWGG 1 cut(s) 494
Bst6I CTCTTC 1 cut(s) 108
BstBI TTCGAA 2 cut(s) 164, 217
BstDEI CTNAG 3 cut(s) 94, 339, 472
BstF5I GGATG 1 cut(s) 184
BstKTI GATC 2 cut(s) 76, 207
BstMAI GTCTC 4 cut(s) 27, 61, 97, 253
BstMBI GATC 2 cut(s) 73, 204
BstMCI CGRYCG 1 cut(s) 207
BstMWI GCNNNNNNNGC 1 cut(s) 107
BstNI CCWGG 1 cut(s) 494
BstPAI GACNNNNGTC 1 cut(s) 447
BstSCI CCNGG 1 cut(s) 492
BstSFI CTRYAG 1 cut(s) 445
BstV1I GCAGC 3 cut(s) 85, 357, 520
BstV2I GAAGAC 1 cut(s) 123
BsuRI GGCC 1 cut(s) 320
BtgZI GCGATG 1 cut(s) 308
BtsCI GGATG 1 cut(s) 184
BtsI GCAGTG 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 190
CsiI ACCWGGT 1 cut(s) 492
CviAII CATG 1 cut(s) 386
DdeI CTNAG 3 cut(s) 94, 339, 472
DpnI GATC 2 cut(s) 75, 206
DpnII GATC 2 cut(s) 73, 204
DriI GACNNNNNGTC 1 cut(s) 266
Eam1104I CTCTTC 1 cut(s) 108
Eam1105I GACNNNNNGTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 108
Eco130I CCWWGG 1 cut(s) 275
Eco31I GGTCTC 1 cut(s) 253
Eco57I CTGAAG 1 cut(s) 404
EcoRI GAATTC 1 cut(s) 166
EcoRII CCWGG 1 cut(s) 492
EcoT14I CCWWGG 1 cut(s) 275
ErhI CCWWGG 1 cut(s) 275
FaeI CATG 1 cut(s) 389
FaiI YATR 6 cut(s) 387, 437, 462, 481, 515, 539
FatI CATG 1 cut(s) 385
Fnu4HI GCNGC 4 cut(s) 99, 336, 371, 534
FokI GGATG 1 cut(s) 191
Fsp4HI GCNGC 4 cut(s) 99, 336, 371, 534
FspBI CTAG 4 cut(s) 30, 131, 276, 359
GluI GCNGC 4 cut(s) 99, 336, 371, 534
GsaI CCCAGC 1 cut(s) 125
HaeIII GGCC 1 cut(s) 320
HapII CCGG 1 cut(s) 263
Hin1II CATG 1 cut(s) 389
HincII GTYRAC 1 cut(s) 63
HindII GTYRAC 1 cut(s) 63
HinfI GANTC 3 cut(s) 5, 363, 424
HpaII CCGG 1 cut(s) 263
HphI GGTGA 1 cut(s) 292
Hpy166II GTNNAC 1 cut(s) 63
Hpy188I TCNGA 3 cut(s) 115, 138, 423
Hpy8I GTNNAC 1 cut(s) 63
HpyAV CCTTC 3 cut(s) 171, 213, 310
HpyCH4V TGCA 4 cut(s) 40, 143, 228, 447
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
HpyF3I CTNAG 3 cut(s) 94, 339, 472
Hsp92II CATG 1 cut(s) 389
Kzo9I GATC 2 cut(s) 73, 204
LguI GCTCTTC 1 cut(s) 108
LmnI GCTCC 1 cut(s) 415
LpnPI CCDG 5 cut(s) 71, 135, 276, 479, 506
Lsp1109I GCAGC 3 cut(s) 85, 357, 520
LweI GCATC 2 cut(s) 119, 485
MabI ACCWGGT 1 cut(s) 492
MaeI CTAG 4 cut(s) 30, 131, 276, 359
MaeIII GTNAC 2 cut(s) 53, 268
MalI GATC 2 cut(s) 75, 206
MboI GATC 2 cut(s) 73, 204
MboII GAAGA 4 cut(s) 95, 128, 262, 299
MluCI AATT 5 cut(s) 166, 343, 406, 457, 542
MlyI GAGTC 1 cut(s) 418
MmeI TCCRAC 1 cut(s) 330
MnlI CCTC 5 cut(s) 181, 235, 291, 346, 440
MseI TTAA 3 cut(s) 405, 485, 501
MspA1I CMGCKG 2 cut(s) 98, 454
MspI CCGG 1 cut(s) 263
MspR9I CCNGG 1 cut(s) 494
Mva1269I GAATGC 1 cut(s) 145
MvaI CCWGG 1 cut(s) 494
MwoI GCNNNNNNNGC 1 cut(s) 107
NdeII GATC 2 cut(s) 73, 204
NlaIII CATG 1 cut(s) 389
NlaIV GGNNCC 1 cut(s) 491
NmuCI GTSAC 1 cut(s) 268
NspV TTCGAA 2 cut(s) 164, 217
PciSI GCTCTTC 1 cut(s) 108
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PctI GAATGC 1 cut(s) 145
PfeI GAWTC 1 cut(s) 363
PkrI GCNGC 4 cut(s) 100, 337, 372, 535
Ple19I CGATCG 1 cut(s) 207
PleI GAGTC 1 cut(s) 418
PpsI GAGTC 1 cut(s) 418
PshAI GACNNNNGTC 1 cut(s) 447
PsiI TTATAA 1 cut(s) 515
Psp6I CCWGG 1 cut(s) 492
PspFI CCCAGC 1 cut(s) 121
PspGI CCWGG 1 cut(s) 492
PspN4I GGNNCC 1 cut(s) 491
PstI CTGCAG 1 cut(s) 449
PvuI CGATCG 1 cut(s) 207
PvuII CAGCTG 2 cut(s) 98, 454
SapI GCTCTTC 1 cut(s) 108
SaqAI TTAA 3 cut(s) 405, 485, 501
SatI GCNGC 4 cut(s) 99, 336, 371, 534
Sau3AI GATC 2 cut(s) 73, 204
SchI GAGTC 1 cut(s) 418
ScrFI CCNGG 1 cut(s) 494
SetI ASST 8 cut(s) 100, 302, 398, 420, 456, 473, 498, 535
SexAI ACCWGGT 1 cut(s) 492
SfaNI GCATC 2 cut(s) 119, 485
SfcI CTRYAG 1 cut(s) 445
SfuI TTCGAA 2 cut(s) 164, 217
SpeI ACTAGT 1 cut(s) 130
Sse9I AATT 5 cut(s) 166, 343, 406, 457, 542
SsiI CCGC 1 cut(s) 335
SspI AATATT 1 cut(s) 511
SspMI CTAG 4 cut(s) 30, 131, 276, 359
StyD4I CCNGG 1 cut(s) 492
StyI CCWWGG 1 cut(s) 275
TaqI TCGA 3 cut(s) 106, 164, 217
TasI AATT 5 cut(s) 166, 343, 406, 457, 542
TauI GCSGC 1 cut(s) 338
TfiI GAWTC 1 cut(s) 363
Tru1I TTAA 3 cut(s) 405, 485, 501
Tru9I TTAA 3 cut(s) 405, 485, 501
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 3 cut(s) 98, 370, 533
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 1 cut(s) 161
TspGWI ACGGA 1 cut(s) 428
TspRI CASTG 1 cut(s) 190
XapI RAATTY 1 cut(s) 166
XmaJI CCTAGG 1 cut(s) 275
XspI CTAG 4 cut(s) 30, 131, 276, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.