Rorug02G0646100

Belongs to the Frigida family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0019485
Physical Location & Seq
Reverse (-)
75596117 .. 75608611
12495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0646100.1

Sequence Viewer

Length: 486 bp
ATGGGTAGAGGGAAGGTGCAACTGAAGCGAATCGAGGACAAGATCAGGCGCCAAGTGACTTTCTCCAAGAGAAGGACTGGGCTGATGAAGAAGGCTCGCGAGCTCTCCGTGCTGTGCGGCGTCGAGGTTGGGCTCATCATCTTCTCCGCCAAAGGGAGGCTCTACGAGTTCTGTAGCGGCGATAGTTTAGGAAATGTTCTTGAGCGTTACCAGATACATAATGAGGAAGAAGTTGCTGCTCCCAAGAATGCCAAGAAGCATAATTTGGAATTGACTGGTAATGGCACATGCGCTAAGAAATCCCTGAAAATGATTCAAAGTGAACTAGAAGCACAGAACATTGAAAATCTGGATTTGACAGAGCTCACTCAACTTGAGAAGCAACTGGATGCTATATTAAGACAAACAAGATCAAGAAAGACGCAGCTCATGACGGAAACAATAACAGCTCTCATTGACAAGCTGCCTCCATATGTATTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
Frigida

Protein Analysis

161

Amino Acids

18.33

Weight (kDa)

9.59

Isoelectric Point (pI)

48.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 10 - 57 5.5e-26 SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box PF01486 103 - 151 5.1e-08 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019485)

Species Orthologous Gene IDs
rosa_laevigata RLG00000024411 RLG00000025543
rosa_roxburghii Rroxscaffold_6G00430150
rosa_rugosa Rorug02G0646000 Rorug02G0646100
rosa_samantha Rh3AG048800 Rh3CG050000 Rh3DG050800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 48
AccII CGCG 1 cut(s) 99
AciI CCGC 3 cut(s) 117, 147, 177
AcuI CTGAAG 1 cut(s) 44
AcyI GRCGYC 2 cut(s) 49, 120
AfiI CCNNNNNNNGG 3 cut(s) 72, 153, 156
AgsI TTSAA 3 cut(s) 317, 344, 481
AjuI GAANNNNNNNTTGG 2 cut(s) 248, 280
AluBI AGCT 5 cut(s) 103, 364, 427, 449, 463
AluI AGCT 5 cut(s) 103, 364, 427, 449, 463
Alw21I GWGCWC 2 cut(s) 105, 366
ApeKI GCWGC 3 cut(s) 236, 424, 463
AspLEI GCGC 2 cut(s) 51, 293
BanI GGYRCC 1 cut(s) 48
BanII GRGCYC 3 cut(s) 105, 135, 366
Bbv12I GWGCWC 2 cut(s) 105, 366
BbvI GCAGC 3 cut(s) 223, 436, 450
BfaI CTAG 1 cut(s) 326
BfmI CTRYAG 1 cut(s) 172
BfoI RGCGCY 1 cut(s) 52
BisI GCNGC 5 cut(s) 118, 178, 237, 425, 464
BlsI GCNGC 5 cut(s) 119, 179, 238, 426, 465
BmiI GGNNCC 1 cut(s) 50
BmrI ACTGGG 1 cut(s) 87
BmsI GCATC 1 cut(s) 379
BmuI ACTGGG 1 cut(s) 87
BpuEI CTTGAG 2 cut(s) 221, 395
BsaHI GRCGYC 2 cut(s) 49, 120
Bsc4I CCNNNNNNNGG 3 cut(s) 72, 153, 156
Bse1I ACTGG 3 cut(s) 82, 280, 390
BseGI GGATG 1 cut(s) 394
BseLI CCNNNNNNNGG 3 cut(s) 72, 153, 156
BseNI ACTGG 3 cut(s) 82, 280, 390
BseXI GCAGC 3 cut(s) 223, 436, 450
Bsh1236I CGCG 1 cut(s) 99
BshNI GGYRCC 1 cut(s) 48
BsiHKAI GWGCWC 2 cut(s) 105, 366
BslI CCNNNNNNNGG 3 cut(s) 72, 153, 156
BsmI GAATGC 1 cut(s) 253
Bsp1286I GDGCHC 3 cut(s) 105, 135, 366
Bsp143I GATC 2 cut(s) 42, 410
Bsp68I TCGCGA 1 cut(s) 99
BspACI CCGC 3 cut(s) 117, 147, 177
BspFNI CGCG 1 cut(s) 99
BspHI TCATGA 1 cut(s) 429
BspLI GGNNCC 1 cut(s) 50
BspT107I GGYRCC 1 cut(s) 48
BsrI ACTGG 3 cut(s) 82, 280, 390
BssMI GATC 2 cut(s) 42, 410
BssNI GRCGYC 2 cut(s) 49, 120
BstACI GRCGYC 2 cut(s) 49, 120
BstC8I GCNNGC 2 cut(s) 97, 101
BstDEI CTNAG 1 cut(s) 294
BstF5I GGATG 1 cut(s) 394
BstFNI CGCG 1 cut(s) 99
BstH2I RGCGCY 1 cut(s) 52
BstHHI GCGC 2 cut(s) 51, 293
BstKTI GATC 2 cut(s) 45, 413
BstMBI GATC 2 cut(s) 42, 410
BstMWI GCNNNNNNNGC 2 cut(s) 25, 109
BstNSI RCATGY 1 cut(s) 291
BstSFI CTRYAG 1 cut(s) 172
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 3 cut(s) 223, 436, 450
BtsCI GGATG 1 cut(s) 394
BtuMI TCGCGA 1 cut(s) 99
Cac8I GCNNGC 2 cut(s) 97, 101
CciI TCATGA 1 cut(s) 429
CfoI GCGC 2 cut(s) 51, 293
CseI GACGC 2 cut(s) 109, 430
CviAII CATG 2 cut(s) 288, 430
CviJI RGCY 9 cut(s) 82, 95, 103, 133, 160, 364, 427, 449, 463
CviKI_1 RGCY 9 cut(s) 82, 95, 103, 133, 160, 364, 427, 449, 463
DdeI CTNAG 1 cut(s) 294
DinI GGCGCC 1 cut(s) 50
DpnI GATC 2 cut(s) 44, 412
DpnII GATC 2 cut(s) 42, 410
EciI GGCGGA 1 cut(s) 136
Ecl136II GAGCTC 2 cut(s) 103, 364
Eco24I GRGCYC 3 cut(s) 105, 135, 366
Eco53kI GAGCTC 2 cut(s) 103, 364
Eco57I CTGAAG 1 cut(s) 44
EcoICRI GAGCTC 2 cut(s) 103, 364
EcoT38I GRGCYC 3 cut(s) 105, 135, 366
EgeI GGCGCC 1 cut(s) 50
EheI GGCGCC 1 cut(s) 50
FaeI CATG 2 cut(s) 291, 433
FaiI YATR 7 cut(s) 219, 261, 289, 395, 431, 472, 474
FatI CATG 2 cut(s) 287, 429
FauNDI CATATG 1 cut(s) 472
Fnu4HI GCNGC 5 cut(s) 118, 178, 237, 425, 464
FokI GGATG 1 cut(s) 401
FriOI GRGCYC 3 cut(s) 105, 135, 366
Fsp4HI GCNGC 5 cut(s) 118, 178, 237, 425, 464
FspBI CTAG 1 cut(s) 326
GlaI GCGC 2 cut(s) 50, 292
GluI GCNGC 5 cut(s) 118, 178, 237, 425, 464
HaeII RGCGCY 1 cut(s) 52
HgaI GACGC 2 cut(s) 109, 430
HhaI GCGC 2 cut(s) 51, 293
Hin1I GRCGYC 2 cut(s) 49, 120
Hin1II CATG 2 cut(s) 291, 433
Hin6I GCGC 2 cut(s) 49, 291
HinP1I GCGC 2 cut(s) 49, 291
HinfI GANTC 2 cut(s) 30, 313
Hpy166II GTNNAC 1 cut(s) 323
Hpy188III TCNNGA 5 cut(s) 98, 200, 350, 414, 430
Hpy8I GTNNAC 1 cut(s) 323
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 3 cut(s) 7, 66, 85
HpyCH4V TGCA 1 cut(s) 19
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 109
HpyF3I CTNAG 1 cut(s) 294
Hsp92I GRCGYC 2 cut(s) 49, 120
Hsp92II CATG 2 cut(s) 291, 433
HspAI GCGC 2 cut(s) 49, 291
KasI GGCGCC 1 cut(s) 48
Kzo9I GATC 2 cut(s) 42, 410
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 7 cut(s) 31, 63, 224, 261, 317, 335, 371
Lsp1109I GCAGC 3 cut(s) 223, 436, 450
LweI GCATC 1 cut(s) 379
MaeI CTAG 1 cut(s) 326
MaeIII GTNAC 2 cut(s) 55, 206
MalI GATC 2 cut(s) 44, 412
MboI GATC 2 cut(s) 42, 410
MboII GAAGA 3 cut(s) 100, 133, 239
MhlI GDGCHC 3 cut(s) 105, 135, 366
MluCI AATT 2 cut(s) 262, 269
Mly113I GGCGCC 1 cut(s) 49
MnlI CCTC 5 cut(s) 28, 118, 150, 217, 477
MseI TTAA 1 cut(s) 398
Mva1269I GAATGC 1 cut(s) 253
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 2 cut(s) 25, 109
NarI GGCGCC 1 cut(s) 49
NdeI CATATG 1 cut(s) 472
NdeII GATC 2 cut(s) 42, 410
NlaIII CATG 2 cut(s) 291, 433
NlaIV GGNNCC 1 cut(s) 50
NmuCI GTSAC 1 cut(s) 55
NruI TCGCGA 1 cut(s) 99
NspI RCATGY 1 cut(s) 291
PagI TCATGA 1 cut(s) 429
PctI GAATGC 1 cut(s) 253
PfeI GAWTC 2 cut(s) 30, 313
PkrI GCNGC 5 cut(s) 119, 179, 238, 426, 465
PluTI GGCGCC 1 cut(s) 52
Psp124BI GAGCTC 2 cut(s) 105, 366
PspN4I GGNNCC 1 cut(s) 50
RruI TCGCGA 1 cut(s) 99
SacI GAGCTC 2 cut(s) 105, 366
SaqAI TTAA 1 cut(s) 398
SatI GCNGC 5 cut(s) 118, 178, 237, 425, 464
Sau3AI GATC 2 cut(s) 42, 410
SduI GDGCHC 3 cut(s) 105, 135, 366
SetI ASST 7 cut(s) 18, 105, 129, 366, 429, 451, 465
SfaNI GCATC 1 cut(s) 379
SfcI CTRYAG 1 cut(s) 172
SfoI GGCGCC 1 cut(s) 50
SmlI CTYRAG 2 cut(s) 200, 374
SmoI CTYRAG 2 cut(s) 200, 374
Sse9I AATT 2 cut(s) 262, 269
SsiI CCGC 3 cut(s) 117, 147, 177
SspDI GGCGCC 1 cut(s) 48
SspMI CTAG 1 cut(s) 326
SstI GAGCTC 2 cut(s) 105, 366
TaqI TCGA 2 cut(s) 33, 123
TasI AATT 2 cut(s) 262, 269
TauI GCSGC 2 cut(s) 120, 180
TfiI GAWTC 2 cut(s) 30, 313
Tru1I TTAA 1 cut(s) 398
Tru9I TTAA 1 cut(s) 398
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 3 cut(s) 236, 424, 463
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 101
TspGWI ACGGA 2 cut(s) 97, 449
XceI RCATGY 1 cut(s) 291
XspI CTAG 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.