Rh3DG050800

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0019485
Physical Location & Seq
Forward (+)
3404983 .. 3411361
6379 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG050800.1

Sequence Viewer

Length: 807 bp
ATGGAAGAAGTGATTGTCGAAGACCTGCCAGAACAGGATGTGCAGGATCCTCCACCACCGGCGTTGCCGCTGGACCTCGGATCGGCCGGCAAGGTCGATCCCTATGTCAAACAGCGAGAGGTGACCAACATCATTCCTTCCCTTGCCAATATGGAGGAGCCAGAATCTTCACTAGCTAGAAATGCAGAAATATTTCTTTCTTCCAATAATCTTCAACCACAAGCTACCAGCGAGGAAATTAAGGAATGTGCCGGGGTTGCTTTAGGGGATAATAAGAGTGGGAATGATTCCACACAGAATGAATTGGCTGCTTCTCTGCTTCAGTTGGGTCAGTTTTCAAGCGAGGGTAAACTGATCACTACCATGAGAGCATTCCCAACCAATAAGGCTTCAGAAGATTCTATTGCAAGGGCTAAGAAGCTTGTTGAACTCTTGTTTCTAACCCGTCTTCCCGTCCCTGTGGCAGTACAAATAGCAATCCATGACAGGCCCTGTCAAGTCATAAAGCTCGGGTACTCGAATGGTGGGCTTCGCGCCCGATTTAAGATCGACAAGGAGAAATTTGACAAACGTGCGAAGCGTTTTAAGAACCACATGAAGAAAATCGCAGACCTGACAGAAACTAATCTCTACCTCAGCGGATGTAATCTCGCTGTTACCGGTAGATCTGCCCTTGGTTCATCTGTCGGGCTTTTGGTGGTCAAGAGGATCGCTTTTGCACTGTTTGTTGAGAATATGATGCCTGAAAACGTGGTCCAGAGGATTGAGAAGAATAAGAAAGCGCTGTTGGATGCAGGAAAAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

268

Amino Acids

29.34

Weight (kDa)

7.65

Isoelectric Point (pI)

47.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019485)

Species Orthologous Gene IDs
rosa_laevigata RLG00000024411 RLG00000025543
rosa_roxburghii Rroxscaffold_6G00430150
rosa_rugosa Rorug02G0646000 Rorug02G0646100
rosa_samantha Rh3AG048800 Rh3CG050000 Rh3DG050800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 33
AccII CGCG 1 cut(s) 534
AciI CCGC 2 cut(s) 68, 639
AclWI GGATC 5 cut(s) 41, 54, 88, 92, 716
AcoI YGGCCR 1 cut(s) 84
AcsI RAATTY 2 cut(s) 560, 801
AcuI CTGAAG 2 cut(s) 305, 375
AfaI GTAC 2 cut(s) 468, 515
AfeI AGCGCT 1 cut(s) 783
AfiI CCNNNNNNNGG 1 cut(s) 82
AgeI ACCGGT 1 cut(s) 659
AgsI TTSAA 3 cut(s) 215, 339, 428
AjuI GAANNNNNNNTTGG 2 cut(s) 770, 802
AluBI AGCT 4 cut(s) 176, 224, 421, 508
AluI AGCT 4 cut(s) 176, 224, 421, 508
AlwI GGATC 5 cut(s) 41, 54, 88, 92, 716
AlwNI CAGNNNCTG 1 cut(s) 492
Ama87I CYCGRG 1 cut(s) 509
Aor51HI AGCGCT 1 cut(s) 783
AoxI GGCC 2 cut(s) 84, 488
ApeKI GCWGC 1 cut(s) 308
ApoI RAATTY 2 cut(s) 560, 801
AsiGI ACCGGT 1 cut(s) 659
Asp700I GAANNNNTTC 1 cut(s) 192
AspLEI GCGC 2 cut(s) 536, 784
AspS9I GGNCC 3 cut(s) 73, 489, 754
AsuC2I CCSGG 1 cut(s) 253
AsuHPI GGTGA 1 cut(s) 133
AvaI CYCGRG 1 cut(s) 509
AvaII GGWCC 2 cut(s) 73, 754
BamHI GGATCC 1 cut(s) 46
BbsI GAAGAC 2 cut(s) 27, 440
BbvCI CCTCAGC 1 cut(s) 635
BbvI GCAGC 1 cut(s) 295
BclI TGATCA 1 cut(s) 354
BcnI CCSGG 1 cut(s) 253
BfaI CTAG 2 cut(s) 173, 177
BfoI RGCGCY 1 cut(s) 785
BfuAI ACCTGC 1 cut(s) 33
BglII AGATCT 1 cut(s) 665
BisI GCNGC 2 cut(s) 68, 309
BlsI GCNGC 2 cut(s) 69, 310
Bme1390I CCNGG 1 cut(s) 253
Bme18I GGWCC 2 cut(s) 73, 754
BmeT110I CYCGRG 1 cut(s) 509
BmgT120I GGNCC 3 cut(s) 73, 489, 754
BmiI GGNNCC 2 cut(s) 48, 159
BmrFI CCNGG 1 cut(s) 253
BmsI GCATC 2 cut(s) 729, 781
BpiI GAAGAC 2 cut(s) 27, 440
Bpu10I CCTNAGC 1 cut(s) 635
BpuMI CCSGG 1 cut(s) 253
BsaJI CCNNGG 3 cut(s) 76, 252, 673
BsaWI WCCGGW 1 cut(s) 659
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse118I RCCGGY 3 cut(s) 58, 86, 659
BseDI CCNNGG 3 cut(s) 76, 252, 673
BseGI GGATG 3 cut(s) 43, 647, 796
BseLI CCNNNNNNNGG 1 cut(s) 82
BseMII CTCAG 1 cut(s) 649
BseRI GAGGAG 1 cut(s) 170
BseX3I CGGCCG 1 cut(s) 84
BseXI GCAGC 1 cut(s) 295
BsgI GTGCAG 1 cut(s) 62
Bsh1236I CGCG 1 cut(s) 534
Bsh1285I CGRYCG 1 cut(s) 87
BshFI GGCC 2 cut(s) 86, 490
BshTI ACCGGT 1 cut(s) 659
BsiEI CGRYCG 1 cut(s) 87
BsiHKCI CYCGRG 1 cut(s) 509
BsiSI CCGG 4 cut(s) 59, 87, 252, 660
BslFI GGGAC 1 cut(s) 440
BslI CCNNNNNNNGG 1 cut(s) 82
BsmFI GGGAC 1 cut(s) 440
BsmI GAATGC 1 cut(s) 371
BsnI GGCC 2 cut(s) 86, 490
BsoBI CYCGRG 1 cut(s) 509
Bsp143I GATC 7 cut(s) 46, 80, 97, 354, 546, 665, 708
BspACI CCGC 2 cut(s) 68, 639
BspANI GGCC 2 cut(s) 86, 490
BspCNI CTCAG 1 cut(s) 648
BspFNI CGCG 1 cut(s) 534
BspLI GGNNCC 2 cut(s) 48, 159
BspMI ACCTGC 1 cut(s) 33
BspPI GGATC 5 cut(s) 41, 54, 88, 92, 716
BsrFI RCCGGY 3 cut(s) 58, 86, 659
BssAI RCCGGY 3 cut(s) 58, 86, 659
BssECI CCNNGG 3 cut(s) 76, 252, 673
BssMI GATC 7 cut(s) 46, 80, 97, 354, 546, 665, 708
BssT1I CCWWGG 1 cut(s) 673
Bst4CI ACNGT 1 cut(s) 723
BstC8I GCNNGC 1 cut(s) 88
BstDEI CTNAG 2 cut(s) 414, 635
BstEII GGTNACC 1 cut(s) 121
BstF5I GGATG 3 cut(s) 43, 647, 796
BstFNI CGCG 1 cut(s) 534
BstH2I RGCGCY 1 cut(s) 785
BstHHI GCGC 2 cut(s) 536, 784
BstKTI GATC 7 cut(s) 49, 83, 100, 357, 549, 668, 711
BstMBI GATC 7 cut(s) 46, 80, 97, 354, 546, 665, 708
BstMCI CGRYCG 1 cut(s) 87
BstMWI GCNNNNNNNGC 2 cut(s) 182, 257
BstPI GGTNACC 1 cut(s) 121
BstSCI CCNGG 1 cut(s) 251
BstUI CGCG 1 cut(s) 534
BstV1I GCAGC 1 cut(s) 295
BstV2I GAAGAC 2 cut(s) 27, 440
BstX2I RGATCY 2 cut(s) 46, 665
BstYI RGATCY 2 cut(s) 46, 665
BstZI CGGCCG 1 cut(s) 84
BsuRI GGCC 2 cut(s) 86, 490
BtsCI GGATG 3 cut(s) 43, 647, 796
BtsIMutI CAGTG 1 cut(s) 719
BveI ACCTGC 1 cut(s) 33
Cac8I GCNNGC 1 cut(s) 88
CaiI CAGNNNCTG 1 cut(s) 492
CfoI GCGC 2 cut(s) 536, 784
Cfr10I RCCGGY 3 cut(s) 58, 86, 659
Cfr13I GGNCC 3 cut(s) 73, 489, 754
Csp6I GTAC 2 cut(s) 467, 514
CspAI ACCGGT 1 cut(s) 659
CspCI CAANNNNNGTGG 2 cut(s) 45, 80
CviAII CATG 3 cut(s) 364, 482, 595
CviQI GTAC 2 cut(s) 467, 514
DdeI CTNAG 2 cut(s) 414, 635
DpnI GATC 7 cut(s) 48, 82, 99, 356, 548, 667, 710
DpnII GATC 7 cut(s) 46, 80, 97, 354, 546, 665, 708
EaeI YGGCCR 1 cut(s) 84
EagI CGGCCG 1 cut(s) 84
EclXI CGGCCG 1 cut(s) 84
Eco130I CCWWGG 1 cut(s) 673
Eco47I GGWCC 2 cut(s) 73, 754
Eco47III AGCGCT 1 cut(s) 783
Eco52I CGGCCG 1 cut(s) 84
Eco57I CTGAAG 2 cut(s) 305, 375
Eco88I CYCGRG 1 cut(s) 509
Eco91I GGTNACC 1 cut(s) 121
EcoO109I RGGNCCY 1 cut(s) 489
EcoO65I GGTNACC 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 673
ErhI CCWWGG 1 cut(s) 673
FaeI CATG 3 cut(s) 367, 485, 598
FaiI YATR 7 cut(s) 105, 152, 365, 483, 503, 596, 737
FaqI GGGAC 1 cut(s) 440
FatI CATG 3 cut(s) 363, 481, 594
FbaI TGATCA 1 cut(s) 354
Fnu4HI GCNGC 2 cut(s) 68, 309
FokI GGATG 3 cut(s) 50, 654, 803
Fsp4HI GCNGC 2 cut(s) 68, 309
FspBI CTAG 2 cut(s) 173, 177
GlaI GCGC 2 cut(s) 535, 783
GluI GCNGC 2 cut(s) 68, 309
HaeII RGCGCY 1 cut(s) 785
HaeIII GGCC 2 cut(s) 86, 490
HapII CCGG 4 cut(s) 59, 87, 252, 660
HhaI GCGC 2 cut(s) 536, 784
Hin1II CATG 3 cut(s) 367, 485, 598
Hin6I GCGC 2 cut(s) 534, 782
HinP1I GCGC 2 cut(s) 534, 782
HindIII AAGCTT 1 cut(s) 419
HinfI GANTC 3 cut(s) 164, 287, 398
HpaII CCGG 4 cut(s) 59, 87, 252, 660
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 1 cut(s) 350
Hpy188I TCNGA 2 cut(s) 80, 394
Hpy188III TCNNGA 2 cut(s) 703, 757
Hpy8I GTNNAC 1 cut(s) 350
HpyAV CCTTC 1 cut(s) 147
HpyCH4III ACNGT 1 cut(s) 723
HpyCH4IV ACGT 2 cut(s) 571, 750
HpyCH4V TGCA 5 cut(s) 43, 185, 407, 719, 794
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 257
HpyF3I CTNAG 2 cut(s) 414, 635
HpySE526I ACGT 2 cut(s) 571, 750
Hsp92II CATG 3 cut(s) 367, 485, 598
HspAI GCGC 2 cut(s) 534, 782
KroI GCCGGC 1 cut(s) 86
KroNI GCCGGC 1 cut(s) 88
Ksp22I TGATCA 1 cut(s) 354
Kzo9I GATC 7 cut(s) 46, 80, 97, 354, 546, 665, 708
LmnI GCTCC 1 cut(s) 157
Lsp1109I GCAGC 1 cut(s) 295
LweI GCATC 2 cut(s) 729, 781
MaeI CTAG 2 cut(s) 173, 177
MaeII ACGT 2 cut(s) 571, 750
MaeIII GTNAC 2 cut(s) 121, 655
MalI GATC 7 cut(s) 48, 82, 99, 356, 548, 667, 710
MboI GATC 7 cut(s) 46, 80, 97, 354, 546, 665, 708
MboII GAAGA 9 cut(s) 17, 32, 159, 192, 203, 407, 440, 610, 781
MflI RGATCY 2 cut(s) 46, 665
MluCI AATT 4 cut(s) 237, 302, 560, 801
MmeI TCCRAC 1 cut(s) 768
MnlI CCTC 9 cut(s) 60, 86, 112, 148, 226, 337, 644, 699, 753
MroNI GCCGGC 1 cut(s) 86
MroXI GAANNNNTTC 1 cut(s) 192
MseI TTAA 3 cut(s) 240, 543, 585
MslI CAYNNNNRTG 1 cut(s) 362
MspA1I CMGCKG 2 cut(s) 70, 639
MspI CCGG 4 cut(s) 59, 87, 252, 660
MspR9I CCNGG 1 cut(s) 253
Mva1269I GAATGC 1 cut(s) 371
MvnI CGCG 1 cut(s) 534
MwoI GCNNNNNNNGC 2 cut(s) 182, 257
NaeI GCCGGC 1 cut(s) 88
NciI CCSGG 1 cut(s) 253
NdeII GATC 7 cut(s) 46, 80, 97, 354, 546, 665, 708
NgoMIV GCCGGC 1 cut(s) 86
NlaIII CATG 3 cut(s) 367, 485, 598
NlaIV GGNNCC 2 cut(s) 48, 159
NmuCI GTSAC 1 cut(s) 121
PcsI WCGNNNNNNNCGW 1 cut(s) 577
PctI GAATGC 1 cut(s) 371
PdiI GCCGGC 1 cut(s) 88
PdmI GAANNNNTTC 1 cut(s) 192
PfeI GAWTC 3 cut(s) 164, 287, 398
PinAI ACCGGT 1 cut(s) 659
PkrI GCNGC 2 cut(s) 69, 310
PspEI GGTNACC 1 cut(s) 121
PspN4I GGNNCC 2 cut(s) 48, 159
PspPI GGNCC 3 cut(s) 73, 489, 754
PstNI CAGNNNCTG 1 cut(s) 492
PsuI RGATCY 2 cut(s) 46, 665
RsaI GTAC 2 cut(s) 468, 515
RsaNI GTAC 2 cut(s) 467, 514
RseI CAYNNNNRTG 1 cut(s) 362
SaqAI TTAA 3 cut(s) 240, 543, 585
SatI GCNGC 2 cut(s) 68, 309
Sau3AI GATC 7 cut(s) 46, 80, 97, 354, 546, 665, 708
Sau96I GGNCC 3 cut(s) 73, 489, 754
ScrFI CCNGG 1 cut(s) 253
SfaNI GCATC 2 cut(s) 729, 781
SgrAI CRCCGGYG 1 cut(s) 58
SinI GGWCC 2 cut(s) 73, 754
SmiMI CAYNNNNRTG 1 cut(s) 362
Sse9I AATT 4 cut(s) 237, 302, 560, 801
SsiI CCGC 2 cut(s) 68, 639
SspI AATATT 1 cut(s) 192
SspMI CTAG 2 cut(s) 173, 177
StyD4I CCNGG 1 cut(s) 251
StyI CCWWGG 1 cut(s) 673
TaaI ACNGT 1 cut(s) 723
TaiI ACGT 2 cut(s) 574, 753
TaqI TCGA 4 cut(s) 18, 96, 518, 549
TasI AATT 4 cut(s) 237, 302, 560, 801
TatI WGTACW 1 cut(s) 466
TauI GCSGC 1 cut(s) 70
TfiI GAWTC 3 cut(s) 164, 287, 398
Tru1I TTAA 3 cut(s) 240, 543, 585
Tru9I TTAA 3 cut(s) 240, 543, 585
TscAI CASTG 1 cut(s) 726
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 1 cut(s) 308
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 3 cut(s) 315, 611, 669
TspRI CASTG 1 cut(s) 726
VpaK11BI GGWCC 2 cut(s) 73, 754
XapI RAATTY 2 cut(s) 560, 801
XmnI GAANNNNTTC 1 cut(s) 192
XspI CTAG 2 cut(s) 173, 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.