Rroxscaffold_6G00430150

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0019485
Physical Location & Seq
Forward (+)
50353242 .. 50355242
2001 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00430150.1

Sequence Viewer

Length: 609 bp
ATGGCCAACTATAACGAAGCGGAATTCGTCGCTTATCTCCCCGAAGATCGAGCCAAAAATTTGATTGAACATTGGGACAAGGTGGAATCGTCTCTACAGCAGCTCGAGATTGCATGCCATTTCATTGAGGGTCAGTTTTCAAGCAAGGGTAAACTGATCACCACCATGCGAGCATTCCCAACCAATAAGGCTTCAGAAGATTCTATTGCAAGGGCTAAGAAGCTTGTTGAACTCTTGTTTCTAACCCGTCTTCCCGTCCCTGTGGCAGTACAAGTAGCAATCCATGACAGGCCCTGTAAAGTCATAAAGCTCGGGTACTCGAATGGTGGGCTTCGCGCCCGATTTAAGATCGACAAGGAGAAATTTGACAAACGTTCAAAGCGTTTTAAGAACCACATGAAGAAAATCGCAGACCTGACAGAAACTAATCTCTACCTCAGCGGATGTAATCTTGCTGTTACCGGTAGATCTGCCCTTGGTTCATCTGTCGGGCTTTGGGTGGTCAAGAGGATCGCTTTTGCACTGTTTGTTGAGAATATGATGCCTGAAAACGTCGTCCAGAGGATTGAGAAGAATAAGAAAAAGCTGTTGGATGCAGGAAAAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

22.88

Weight (kDa)

9.73

Isoelectric Point (pI)

42.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019485)

Species Orthologous Gene IDs
rosa_laevigata RLG00000024411 RLG00000025543
rosa_roxburghii Rroxscaffold_6G00430150
rosa_rugosa Rorug02G0646000 Rorug02G0646100
rosa_samantha Rh3AG048800 Rh3CG050000 Rh3DG050800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 336
AciI CCGC 2 cut(s) 20, 441
AclI AACGTT 1 cut(s) 373
AclWI GGATC 1 cut(s) 518
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 4 cut(s) 23, 58, 362, 603
AcuI CTGAAG 1 cut(s) 177
AfaI GTAC 2 cut(s) 270, 317
AgeI ACCGGT 1 cut(s) 461
AgsI TTSAA 4 cut(s) 68, 141, 230, 378
AjuI GAANNNNNNNTTGG 2 cut(s) 572, 604
AluBI AGCT 4 cut(s) 103, 223, 310, 586
AluI AGCT 4 cut(s) 103, 223, 310, 586
Alw26I GTCTC 1 cut(s) 96
AlwI GGATC 1 cut(s) 518
AlwNI CAGNNNCTG 1 cut(s) 294
Ama87I CYCGRG 2 cut(s) 104, 311
AoxI GGCC 2 cut(s) 3, 290
ApeKI GCWGC 1 cut(s) 100
ApoI RAATTY 4 cut(s) 23, 58, 362, 603
AsiGI ACCGGT 1 cut(s) 461
AspLEI GCGC 1 cut(s) 338
AspS9I GGNCC 1 cut(s) 291
AsuHPI GGTGA 1 cut(s) 151
AvaI CYCGRG 2 cut(s) 104, 311
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 242
BbvCI CCTCAGC 1 cut(s) 437
BbvI GCAGC 1 cut(s) 112
BclI TGATCA 1 cut(s) 156
BcoDI GTCTC 1 cut(s) 96
BfmI CTRYAG 1 cut(s) 95
BglII AGATCT 1 cut(s) 467
BisI GCNGC 1 cut(s) 101
BlsI GCNGC 1 cut(s) 102
BmeT110I CYCGRG 2 cut(s) 104, 311
BmgT120I GGNCC 1 cut(s) 291
BmsI GCATC 2 cut(s) 531, 583
BpiI GAAGAC 1 cut(s) 242
Bpu10I CCTNAGC 1 cut(s) 437
BsaJI CCNNGG 1 cut(s) 475
BsaWI WCCGGW 1 cut(s) 461
Bse118I RCCGGY 1 cut(s) 461
BseDI CCNNGG 1 cut(s) 475
BseGI GGATG 2 cut(s) 449, 598
BseMII CTCAG 1 cut(s) 451
BseXI GCAGC 1 cut(s) 112
Bsh1236I CGCG 1 cut(s) 336
BshFI GGCC 2 cut(s) 5, 292
BshTI ACCGGT 1 cut(s) 461
BsiHKCI CYCGRG 2 cut(s) 104, 311
BsiSI CCGG 1 cut(s) 462
BslFI GGGAC 2 cut(s) 89, 242
BsmAI GTCTC 1 cut(s) 96
BsmBI CGTCTC 1 cut(s) 96
BsmFI GGGAC 2 cut(s) 89, 242
BsmI GAATGC 1 cut(s) 173
BsnI GGCC 2 cut(s) 5, 292
BsoBI CYCGRG 2 cut(s) 104, 311
Bsp143I GATC 5 cut(s) 46, 156, 348, 467, 510
BspACI CCGC 2 cut(s) 20, 441
BspANI GGCC 2 cut(s) 5, 292
BspCNI CTCAG 1 cut(s) 450
BspFNI CGCG 1 cut(s) 336
BspPI GGATC 1 cut(s) 518
BsrFI RCCGGY 1 cut(s) 461
BssAI RCCGGY 1 cut(s) 461
BssECI CCNNGG 1 cut(s) 475
BssMI GATC 5 cut(s) 46, 156, 348, 467, 510
BssT1I CCWWGG 1 cut(s) 475
Bst4CI ACNGT 1 cut(s) 525
BstC8I GCNNGC 2 cut(s) 115, 171
BstDEI CTNAG 2 cut(s) 216, 437
BstF5I GGATG 2 cut(s) 449, 598
BstFNI CGCG 1 cut(s) 336
BstHHI GCGC 1 cut(s) 338
BstKTI GATC 5 cut(s) 49, 159, 351, 470, 513
BstMAI GTCTC 1 cut(s) 96
BstMBI GATC 5 cut(s) 46, 156, 348, 467, 510
BstNSI RCATGY 1 cut(s) 117
BstSFI CTRYAG 1 cut(s) 95
BstUI CGCG 1 cut(s) 336
BstV1I GCAGC 1 cut(s) 112
BstV2I GAAGAC 1 cut(s) 242
BstX2I RGATCY 1 cut(s) 467
BstYI RGATCY 1 cut(s) 467
BsuRI GGCC 2 cut(s) 5, 292
BtsCI GGATG 2 cut(s) 449, 598
BtsIMutI CAGTG 1 cut(s) 521
Cac8I GCNNGC 2 cut(s) 115, 171
CaiI CAGNNNCTG 1 cut(s) 294
CfoI GCGC 1 cut(s) 338
Cfr10I RCCGGY 1 cut(s) 461
Cfr13I GGNCC 1 cut(s) 291
Csp6I GTAC 2 cut(s) 269, 316
CspAI ACCGGT 1 cut(s) 461
CviAII CATG 4 cut(s) 114, 166, 284, 397
CviQI GTAC 2 cut(s) 269, 316
DdeI CTNAG 2 cut(s) 216, 437
DpnI GATC 5 cut(s) 48, 158, 350, 469, 512
DpnII GATC 5 cut(s) 46, 156, 348, 467, 510
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 475
Eco57I CTGAAG 1 cut(s) 177
Eco88I CYCGRG 2 cut(s) 104, 311
EcoO109I RGGNCCY 1 cut(s) 291
EcoRI GAATTC 1 cut(s) 23
EcoT14I CCWWGG 1 cut(s) 475
ErhI CCWWGG 1 cut(s) 475
Esp3I CGTCTC 1 cut(s) 96
FaeI CATG 4 cut(s) 117, 169, 287, 400
FaiI YATR 7 cut(s) 12, 115, 167, 285, 305, 398, 539
FaqI GGGAC 2 cut(s) 89, 242
FatI CATG 4 cut(s) 113, 165, 283, 396
FbaI TGATCA 1 cut(s) 156
Fnu4HI GCNGC 1 cut(s) 101
FokI GGATG 2 cut(s) 456, 605
Fsp4HI GCNGC 1 cut(s) 101
GlaI GCGC 1 cut(s) 337
GluI GCNGC 1 cut(s) 101
HaeIII GGCC 2 cut(s) 5, 292
HapII CCGG 1 cut(s) 462
HhaI GCGC 1 cut(s) 338
Hin1II CATG 4 cut(s) 117, 169, 287, 400
Hin6I GCGC 1 cut(s) 336
HinP1I GCGC 1 cut(s) 336
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 2 cut(s) 86, 200
HpaII CCGG 1 cut(s) 462
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 1 cut(s) 152
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 3 cut(s) 106, 505, 559
Hpy8I GTNNAC 1 cut(s) 152
Hpy99I CGWCG 2 cut(s) 32, 557
HpyCH4III ACNGT 1 cut(s) 525
HpyCH4IV ACGT 2 cut(s) 373, 552
HpyCH4V TGCA 4 cut(s) 113, 209, 521, 596
HpyF3I CTNAG 2 cut(s) 216, 437
HpySE526I ACGT 2 cut(s) 373, 552
Hsp92II CATG 4 cut(s) 117, 169, 287, 400
HspAI GCGC 1 cut(s) 336
Ksp22I TGATCA 1 cut(s) 156
Kzo9I GATC 5 cut(s) 46, 156, 348, 467, 510
LpnPI CCDG 8 cut(s) 273, 274, 307, 428, 475, 558, 572, 582
Lsp1109I GCAGC 1 cut(s) 112
LweI GCATC 2 cut(s) 531, 583
MaeII ACGT 2 cut(s) 373, 552
MaeIII GTNAC 1 cut(s) 457
MalI GATC 5 cut(s) 48, 158, 350, 469, 512
MboI GATC 5 cut(s) 46, 156, 348, 467, 510
MboII GAAGA 5 cut(s) 56, 209, 242, 412, 583
MflI RGATCY 1 cut(s) 467
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 23, 58, 362, 603
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 570
MnlI CCTC 4 cut(s) 121, 446, 501, 555
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 345, 387
MslI CAYNNNNRTG 1 cut(s) 164
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 441
MspI CCGG 1 cut(s) 462
Mva1269I GAATGC 1 cut(s) 173
MvnI CGCG 1 cut(s) 336
NdeII GATC 5 cut(s) 46, 156, 348, 467, 510
NlaIII CATG 4 cut(s) 117, 169, 287, 400
NspI RCATGY 1 cut(s) 117
PaeI GCATGC 1 cut(s) 117
PaeR7I CTCGAG 1 cut(s) 104
PcsI WCGNNNNNNNCGW 1 cut(s) 379
PctI GAATGC 1 cut(s) 173
PfeI GAWTC 2 cut(s) 86, 200
PinAI ACCGGT 1 cut(s) 461
PkrI GCNGC 1 cut(s) 102
Psp1406I AACGTT 1 cut(s) 373
PspPI GGNCC 1 cut(s) 291
PstNI CAGNNNCTG 1 cut(s) 294
PsuI RGATCY 1 cut(s) 467
RsaI GTAC 2 cut(s) 270, 317
RsaNI GTAC 2 cut(s) 269, 316
RseI CAYNNNNRTG 1 cut(s) 164
SaqAI TTAA 2 cut(s) 345, 387
SatI GCNGC 1 cut(s) 101
Sau3AI GATC 5 cut(s) 46, 156, 348, 467, 510
Sau96I GGNCC 1 cut(s) 291
SetI ASST 9 cut(s) 84, 105, 225, 312, 376, 417, 438, 555, 588
SfaNI GCATC 2 cut(s) 531, 583
SfcI CTRYAG 1 cut(s) 95
Sfr274I CTCGAG 1 cut(s) 104
SlaI CTCGAG 1 cut(s) 104
SmiMI CAYNNNNRTG 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
SphI GCATGC 1 cut(s) 117
Sse9I AATT 4 cut(s) 23, 58, 362, 603
SsiI CCGC 2 cut(s) 20, 441
StyI CCWWGG 1 cut(s) 475
TaaI ACNGT 1 cut(s) 525
TaiI ACGT 2 cut(s) 376, 555
TaqI TCGA 4 cut(s) 49, 105, 320, 351
TasI AATT 4 cut(s) 23, 58, 362, 603
TatI WGTACW 1 cut(s) 268
TfiI GAWTC 2 cut(s) 86, 200
Tru1I TTAA 2 cut(s) 345, 387
Tru9I TTAA 2 cut(s) 345, 387
TscAI CASTG 1 cut(s) 528
TseI GCWGC 1 cut(s) 100
TspDTI ATGAA 3 cut(s) 112, 413, 471
TspRI CASTG 1 cut(s) 528
XapI RAATTY 4 cut(s) 23, 58, 362, 603
XceI RCATGY 1 cut(s) 117
XhoI CTCGAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.