RLG00000024411

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0019485
Physical Location & Seq
Forward (+)
35588838 .. 35590609
1772 bp
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UTR
Exon/CDS
Intron
RLM00000024411

Sequence Viewer

Length: 486 bp
ATGAGGGCATTCCCAGCCAATAATGCTTCAGAAGATTCTATTAAAAGGGCTAAGAAGCTCGTTGAACCCGTTTCTAACCCGTCTTCCCATCCCTGTGGTATAAATGACATATCCTTCTTCATTGCGGTACAAGAAGCAATCCATGGCAGGCCCTGTGAAGTCATAAAGATCGGCTACTCGAATGGTGGGTTTCGCGCCCGATATAAGATCGACAAGGAGTTGATTAATCGGAGCATTGTCCTTGGTCCGATTGCTGGGAAATTTGACAAACGTGTGAAGCGTTTTAAGAACCACATGCAGATCTGCGCTCTTGGTTCATCTGTCGGGTTTTTGGTGGTCAAGAGGATTGCAAAAGCGGTGCTTATTGAGAATATGGTACCTCAATACGTCATCATGAAGATTGAGCAGAATAAGAAAAAGCTGTTGAATGCACAGACTGGAGGACAAGACGATGATGACCTGAACCCCATAACAATCACCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

17.87

Weight (kDa)

9.71

Isoelectric Point (pI)

35.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019485)

Species Orthologous Gene IDs
rosa_laevigata RLG00000024411 RLG00000025543
rosa_roxburghii Rroxscaffold_6G00430150
rosa_rugosa Rorug02G0646000 Rorug02G0646100
rosa_samantha Rh3AG048800 Rh3CG050000 Rh3DG050800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 376
AccB1I GGYRCC 1 cut(s) 376
AccII CGCG 1 cut(s) 195
AciI CCGC 2 cut(s) 125, 356
AcsI RAATTY 1 cut(s) 260
AcuI CTGAAG 1 cut(s) 12
AfaI GTAC 2 cut(s) 129, 378
AfiI CCNNNNNNNGG 1 cut(s) 254
AflIII ACRYGT 1 cut(s) 271
AgsI TTSAA 2 cut(s) 65, 427
AluBI AGCT 2 cut(s) 58, 421
AluI AGCT 2 cut(s) 58, 421
AlwNI CAGNNNCTG 1 cut(s) 153
AoxI GGCC 1 cut(s) 149
ApoI RAATTY 1 cut(s) 260
AseI ATTAAT 1 cut(s) 225
Asp718I GGTACC 1 cut(s) 376
AspLEI GCGC 2 cut(s) 197, 308
AspS9I GGNCC 2 cut(s) 150, 245
AsuHPI GGTGA 1 cut(s) 469
AvaII GGWCC 1 cut(s) 245
BanI GGYRCC 1 cut(s) 376
BbsI GAAGAC 1 cut(s) 75
BccI CCATC 1 cut(s) 96
BglII AGATCT 1 cut(s) 300
Bme18I GGWCC 1 cut(s) 245
BmgT120I GGNCC 2 cut(s) 150, 245
BmiI GGNNCC 1 cut(s) 378
BpiI GAAGAC 1 cut(s) 75
BpmI CTGGAG 1 cut(s) 459
BsaJI CCNNGG 2 cut(s) 142, 241
Bsc4I CCNNNNNNNGG 1 cut(s) 254
Bse1I ACTGG 1 cut(s) 442
Bse3DI GCAATG 1 cut(s) 120
BseDI CCNNGG 2 cut(s) 142, 241
BseGI GGATG 1 cut(s) 88
BseLI CCNNNNNNNGG 1 cut(s) 254
BseMI GCAATG 1 cut(s) 120
BseNI ACTGG 1 cut(s) 442
BseYI CCCAGC 2 cut(s) 13, 254
Bsh1236I CGCG 1 cut(s) 195
BshFI GGCC 1 cut(s) 151
BshNI GGYRCC 1 cut(s) 376
BslI CCNNNNNNNGG 1 cut(s) 254
BsmI GAATGC 2 cut(s) 8, 433
BsnI GGCC 1 cut(s) 151
Bsp143I GATC 3 cut(s) 168, 207, 300
Bsp19I CCATGG 1 cut(s) 142
BspACI CCGC 2 cut(s) 125, 356
BspANI GGCC 1 cut(s) 151
BspFNI CGCG 1 cut(s) 195
BspHI TCATGA 1 cut(s) 393
BspLI GGNNCC 1 cut(s) 378
BspT107I GGYRCC 1 cut(s) 376
BsrDI GCAATG 1 cut(s) 120
BsrI ACTGG 1 cut(s) 442
BssECI CCNNGG 2 cut(s) 142, 241
BssMI GATC 3 cut(s) 168, 207, 300
BssT1I CCWWGG 2 cut(s) 142, 241
BstC8I GCNNGC 1 cut(s) 149
BstDEI CTNAG 1 cut(s) 51
BstDSI CCRYGG 1 cut(s) 142
BstF5I GGATG 1 cut(s) 88
BstFNI CGCG 1 cut(s) 195
BstHHI GCGC 2 cut(s) 197, 308
BstKTI GATC 3 cut(s) 171, 210, 303
BstMBI GATC 3 cut(s) 168, 207, 300
BstMWI GCNNNNNNNGC 2 cut(s) 14, 23
BstNSI RCATGY 1 cut(s) 298
BstUI CGCG 1 cut(s) 195
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 1 cut(s) 300
BstXI CCANNNNNNTGG 1 cut(s) 95
BstYI RGATCY 1 cut(s) 300
BsuRI GGCC 1 cut(s) 151
BtgI CCRYGG 1 cut(s) 142
BtsCI GGATG 1 cut(s) 88
Cac8I GCNNGC 1 cut(s) 149
CaiI CAGNNNCTG 1 cut(s) 153
CciI TCATGA 1 cut(s) 393
CfoI GCGC 2 cut(s) 197, 308
Cfr13I GGNCC 2 cut(s) 150, 245
Csp6I GTAC 2 cut(s) 128, 377
CviAII CATG 4 cut(s) 143, 295, 394, 483
CviJI RGCY 6 cut(s) 17, 50, 58, 151, 174, 421
CviKI_1 RGCY 6 cut(s) 17, 50, 58, 151, 174, 421
CviQI GTAC 2 cut(s) 128, 377
DdeI CTNAG 1 cut(s) 51
DpnI GATC 3 cut(s) 170, 209, 302
DpnII GATC 3 cut(s) 168, 207, 300
Eco130I CCWWGG 2 cut(s) 142, 241
Eco47I GGWCC 1 cut(s) 245
Eco57I CTGAAG 1 cut(s) 12
EcoO109I RGGNCCY 1 cut(s) 150
EcoT14I CCWWGG 2 cut(s) 142, 241
ErhI CCWWGG 2 cut(s) 142, 241
FaeI CATG 4 cut(s) 146, 298, 397, 486
FalI AAGNNNNNCTT 2 cut(s) 345, 377
FatI CATG 4 cut(s) 142, 294, 393, 482
FokI GGATG 1 cut(s) 75
GlaI GCGC 2 cut(s) 196, 307
GsaI CCCAGC 2 cut(s) 17, 258
GsuI CTGGAG 1 cut(s) 459
HaeIII GGCC 1 cut(s) 151
HhaI GCGC 2 cut(s) 197, 308
Hin1II CATG 4 cut(s) 146, 298, 397, 486
Hin6I GCGC 2 cut(s) 195, 306
HinP1I GCGC 2 cut(s) 195, 306
HinfI GANTC 1 cut(s) 35
HphI GGTGA 1 cut(s) 469
Hpy188I TCNGA 3 cut(s) 31, 231, 249
Hpy188III TCNNGA 2 cut(s) 340, 394
HpyAV CCTTC 1 cut(s) 124
HpyCH4IV ACGT 2 cut(s) 271, 387
HpyCH4V TGCA 3 cut(s) 298, 350, 431
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 23
HpyF3I CTNAG 1 cut(s) 51
HpySE526I ACGT 2 cut(s) 271, 387
Hsp92II CATG 4 cut(s) 146, 298, 397, 486
HspAI GCGC 2 cut(s) 195, 306
KpnI GGTACC 1 cut(s) 380
Kzo9I GATC 3 cut(s) 168, 207, 300
LmnI GCTCC 1 cut(s) 231
LpnPI CCDG 7 cut(s) 27, 106, 133, 166, 240, 423, 473
MaeII ACGT 2 cut(s) 271, 387
MalI GATC 3 cut(s) 170, 209, 302
MboI GATC 3 cut(s) 168, 207, 300
MboII GAAGA 4 cut(s) 44, 75, 109, 409
MflI RGATCY 1 cut(s) 300
MluCI AATT 1 cut(s) 260
MnlI CCTC 3 cut(s) 336, 390, 434
MseI TTAA 3 cut(s) 42, 225, 285
MslI CAYNNNNRTG 1 cut(s) 93
Mva1269I GAATGC 2 cut(s) 8, 433
MvnI CGCG 1 cut(s) 195
MwoI GCNNNNNNNGC 2 cut(s) 14, 23
NcoI CCATGG 1 cut(s) 142
NdeII GATC 3 cut(s) 168, 207, 300
NlaIII CATG 4 cut(s) 146, 298, 397, 486
NlaIV GGNNCC 1 cut(s) 378
NspI RCATGY 1 cut(s) 298
PagI TCATGA 1 cut(s) 393
PcsI WCGNNNNNNNCGW 2 cut(s) 66, 277
PctI GAATGC 2 cut(s) 8, 433
PfeI GAWTC 1 cut(s) 35
PshBI ATTAAT 1 cut(s) 225
PspFI CCCAGC 2 cut(s) 13, 254
PspN4I GGNNCC 1 cut(s) 378
PspPI GGNCC 2 cut(s) 150, 245
PstNI CAGNNNCTG 1 cut(s) 153
PsuI RGATCY 1 cut(s) 300
RsaI GTAC 2 cut(s) 129, 378
RsaNI GTAC 2 cut(s) 128, 377
RseI CAYNNNNRTG 1 cut(s) 93
SaqAI TTAA 3 cut(s) 42, 225, 285
Sau3AI GATC 3 cut(s) 168, 207, 300
Sau96I GGNCC 2 cut(s) 150, 245
SetI ASST 6 cut(s) 60, 274, 382, 390, 423, 462
SinI GGWCC 1 cut(s) 245
SmiMI CAYNNNNRTG 1 cut(s) 93
Sse9I AATT 1 cut(s) 260
SsiI CCGC 2 cut(s) 125, 356
StyI CCWWGG 2 cut(s) 142, 241
TaiI ACGT 2 cut(s) 274, 390
TaqI TCGA 2 cut(s) 179, 210
TasI AATT 1 cut(s) 260
TfiI GAWTC 1 cut(s) 35
Tru1I TTAA 3 cut(s) 42, 225, 285
Tru9I TTAA 3 cut(s) 42, 225, 285
TspDTI ATGAA 3 cut(s) 109, 306, 410
VpaK11BI GGWCC 1 cut(s) 245
VspI ATTAAT 1 cut(s) 225
XapI RAATTY 1 cut(s) 260
XceI RCATGY 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.