Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005947.1

Orthogroup ID

OG0028378

Physical Location & Seq

Genomic Coordinates Forward (+)

86827 .. 88406

Gene Structure 1580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005947.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

atgtctgatctagctgtggagaaactagttgagggtgggattggacttgtccatcctgatcaagctggtgatttctataattctatgcactcttacctttctgaagctggtatcacaggagtcaaagtggatgttattcatactcttgaatatgtatctgaggaattcggaggccgtgttgagcttgcaaaggcttattacaaggggctgacttcttctcttgtaaagaacttcaatggaactggacttattgctagcatgcaacaatgcaatgatttcttcttccttggaacaaaacaaatctctattggaagagttggtgatgatttttggtttcaggatccaaatggagaccccatgggagtttactggctacaaggtgtccatatgatccattgtgcctacaacagcatgtggatgggtcaattcattcagcctgattgggatatgttccagtcagatcatctgtgtgccaaatttcatgccggatctagggctatatgtggaggtccggtgtatataagtgactcggttggtggtcacaattttgatcttattaggcagcttgtttacccagatggtaccatccccaagtgccagcattttgctcttccaactagggactgcctattcaagaaccccttatttgacagcaagactgctctcaaaatttggaatgtcaacaagtttggtggtgtgatgggagctttcaactgccaaggggctggttgggacccaaaagaaaagagaatcaaaggctactcccagtgctacaaggaaatcctctattcagtgcatgtttctgaaattgaatgggaccaaaagatggaagccgcccatttgggtaaggccgaagaatatgtggtctatctcaaccaggccaatgaactcttccaaatgacccccaaatccgatcccattcaaatggtgatccaaccatcttcgttcgagattttcagcttcgtgccagtacaaaagctcggctccaacaacaccaagtttgcgccgattggactgacaaacatgttcaacagtggaggcactatccaagagctggagtatacaagtggcatggaatcttatagtgcaaagatcaaggttaaaggtggaggcaacttcttggcctactcaagtcagtctccgaagaagtgttgtttgaatggtgctgtagtgacttttgagtggtctgcttctggtaaactgtccctgaatcttccttgggttgaagaagctgctggaatttctgatgtcgttcttgtgttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006950 GO:0006979 GO:0008150 GO:0008378 GO:0009628 GO:0016740 GO:0016757 GO:0016758 GO:0047268 GO:0050896 GO:0080167

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Raffinose_syn

Protein Analysis

421

Amino Acids

46.68

Weight (kDa)

5.58

Isoelectric Point (pI)

27.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028378)

Species	Orthologous Gene IDs
malus_domestica	MD15G1191000.v1.1
rosa_multiflora	Rmu_sc0005947.1_g000018

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	581
AccB1I	GGYRCC	1 cut(s)	581
AccB7I	CCANNNNNTGG	2 cut(s)	826, 1054
AccI	GTMKAC	1 cut(s)	1061
AciI	CCGC	1 cut(s)	834
AclWI	GGATC	6 cut(s)	335, 348, 385, 496, 908, 925
AcsI	RAATTY	4 cut(s)	164, 476, 669, 1239
AcuI	CTGAAG	1 cut(s)	123
AfaI	GTAC	2 cut(s)	583, 972
AfiI	CCNNNNNNNGG	3 cut(s)	492, 826, 1054
AflIII	ACRYGT	1 cut(s)	1023
AgsI	TTSAA	9 cut(s)	149, 235, 634, 712, 812, 923, 1030, 1159, 1226
AhlI	ACTAGT	1 cut(s)	25
AjnI	CCWGG	1 cut(s)	876
AjuI	GAANNNNNNNTTGG	2 cut(s)	875, 907
Alw26I	GTCTC	2 cut(s)	345, 1143
AlwI	GGATC	6 cut(s)	335, 348, 385, 496, 908, 925
AoxI	GGCC	4 cut(s)	172, 849, 879, 1122
ApeKI	GCWGC	2 cut(s)	562, 1232
ApoI	RAATTY	4 cut(s)	164, 476, 669, 1239
Asp718I	GGTACC	1 cut(s)	581
AspLEI	GCGC	1 cut(s)	1006
AspS9I	GGNCC	3 cut(s)	509, 733, 817
AsuHPI	GGTGA	3 cut(s)	80, 332, 940
AsuNHI	GCTAGC	1 cut(s)	254
AvaII	GGWCC	3 cut(s)	509, 733, 817
BamHI	GGATCC	1 cut(s)	340
BanI	GGYRCC	1 cut(s)	581
BbvI	GCAGC	2 cut(s)	574, 1219
BccI	CCATC	7 cut(s)	60, 412, 572, 593, 694, 820, 946
BceAI	ACGGC	1 cut(s)	159
BciT130I	CCWGG	1 cut(s)	878
BclI	TGATCA	1 cut(s)	58
BcoDI	GTCTC	2 cut(s)	345, 1143
BcuI	ACTAGT	1 cut(s)	25
BfaI	CTAG	5 cut(s)	11, 26, 255, 492, 618
BfmI	CTRYAG	1 cut(s)	1167
BisI	GCNGC	3 cut(s)	563, 834, 1233
BlsI	GCNGC	3 cut(s)	564, 835, 1234
Bme1390I	CCNGG	1 cut(s)	878
Bme18I	GGWCC	3 cut(s)	509, 733, 817
BmgT120I	GGNCC	3 cut(s)	509, 733, 817
BmiI	GGNNCC	6 cut(s)	342, 583, 734, 735, 818, 985
BmrFI	CCNGG	1 cut(s)	878
BmrI	ACTGGG	1 cut(s)	760
BmtI	GCTAGC	1 cut(s)	258
BmuI	ACTGGG	1 cut(s)	760
BpmI	CTGGAG	1 cut(s)	1076
BpuEI	CTTGAG	1 cut(s)	1114
BsaI	GGTCTC	1 cut(s)	345
BsaJI	CCNNGG	4 cut(s)	286, 357, 718, 1217
BsaWI	WCCGGW	1 cut(s)	511
BsaXI	ACNNNNNCTCC	6 cut(s)	111, 141, 162, 192, 498, 528
Bsc4I	CCNNNNNNNGG	3 cut(s)	492, 826, 1054
Bse1I	ACTGG	5 cut(s)	247, 374, 454, 766, 968
Bse3DI	GCAATG	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	878
BseDI	CCNNGG	4 cut(s)	286, 357, 718, 1217
BseGI	GGATG	4 cut(s)	52, 136, 423, 585
BseLI	CCNNNNNNNGG	3 cut(s)	492, 826, 1054
BseMI	GCAATG	1 cut(s)	277
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	5 cut(s)	247, 374, 454, 766, 968
BseXI	GCAGC	2 cut(s)	574, 1219
BshFI	GGCC	4 cut(s)	174, 851, 881, 1124
BshNI	GGYRCC	1 cut(s)	581
BsiSI	CCGG	2 cut(s)	486, 512
BslFI	GGGAC	4 cut(s)	635, 746, 830, 1189
BslI	CCNNNNNNNGG	3 cut(s)	492, 826, 1054
BsmAI	GTCTC	2 cut(s)	345, 1143
BsmFI	GGGAC	4 cut(s)	635, 746, 830, 1189
BsnI	GGCC	4 cut(s)	174, 851, 881, 1124
Bso31I	GGTCTC	1 cut(s)	345
Bsp19I	CCATGG	1 cut(s)	357
BspACI	CCGC	1 cut(s)	834
BspANI	GGCC	4 cut(s)	174, 851, 881, 1124
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	6 cut(s)	342, 583, 734, 735, 818, 985
BspOI	GCTAGC	1 cut(s)	258
BspPI	GGATC	6 cut(s)	335, 348, 385, 496, 908, 925
BspQI	GCTCTTC	1 cut(s)	615
BspT107I	GGYRCC	1 cut(s)	581
BspTNI	GGTCTC	1 cut(s)	345
BsrDI	GCAATG	1 cut(s)	277
BsrI	ACTGG	5 cut(s)	247, 374, 454, 766, 968
BssECI	CCNNGG	4 cut(s)	286, 357, 718, 1217
BssNAI	GTATAC	1 cut(s)	1062
BssT1I	CCWWGG	4 cut(s)	286, 357, 718, 1217
Bst1107I	GTATAC	1 cut(s)	1062
Bst2UI	CCWGG	1 cut(s)	878
Bst4CI	ACNGT	2 cut(s)	1034, 1203
Bst6I	CTCTTC	3 cut(s)	307, 615, 896
BstC8I	GCNNGC	4 cut(s)	186, 256, 260, 599
BstDEI	CTNAG	1 cut(s)	159
BstDSI	CCRYGG	1 cut(s)	357
BstF5I	GGATG	4 cut(s)	52, 136, 423, 585
BstHHI	GCGC	1 cut(s)	1006
BstMAI	GTCTC	2 cut(s)	345, 1143
BstNI	CCWGG	1 cut(s)	878
BstNSI	RCATGY	4 cut(s)	262, 415, 800, 1027
BstSCI	CCNGG	1 cut(s)	876
BstSFI	CTRYAG	1 cut(s)	1167
BstV1I	GCAGC	2 cut(s)	574, 1219
BstX2I	RGATCY	2 cut(s)	340, 488
BstXI	CCANNNNNNTGG	2 cut(s)	725, 925
BstYI	RGATCY	2 cut(s)	340, 488
BstZ17I	GTATAC	1 cut(s)	1062
BsuRI	GGCC	4 cut(s)	174, 851, 881, 1124
BtgI	CCRYGG	1 cut(s)	357
BtsCI	GGATG	4 cut(s)	52, 136, 423, 585
BtsIMutI	CAGTG	3 cut(s)	773, 798, 1039
Cac8I	GCNNGC	4 cut(s)	186, 256, 260, 599
CfoI	GCGC	1 cut(s)	1006
Cfr13I	GGNCC	3 cut(s)	509, 733, 817
Csp6I	GTAC	2 cut(s)	582, 971
CspCI	CAANNNNNGTGG	2 cut(s)	673, 708
CviAII	CATG	7 cut(s)	259, 358, 412, 482, 797, 1024, 1072
CviQI	GTAC	2 cut(s)	582, 971
DdeI	CTNAG	1 cut(s)	159
Eam1104I	CTCTTC	3 cut(s)	307, 615, 896
EarI	CTCTTC	3 cut(s)	307, 615, 896
Eco130I	CCWWGG	4 cut(s)	286, 357, 718, 1217
Eco31I	GGTCTC	1 cut(s)	345
Eco47I	GGWCC	3 cut(s)	509, 733, 817
Eco57I	CTGAAG	1 cut(s)	123
EcoO109I	RGGNCCY	1 cut(s)	733
EcoRI	GAATTC	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	876
EcoT14I	CCWWGG	4 cut(s)	286, 357, 718, 1217
ErhI	CCWWGG	4 cut(s)	286, 357, 718, 1217
FaeI	CATG	7 cut(s)	262, 361, 415, 485, 800, 1027, 1075
FalI	AAGNNNNNCTT	2 cut(s)	626, 658
FaqI	GGGAC	4 cut(s)	635, 746, 830, 1189
FatI	CATG	7 cut(s)	258, 357, 411, 481, 796, 1023, 1071
FauNDI	CATATG	1 cut(s)	387
FbaI	TGATCA	1 cut(s)	58
FblI	GTMKAC	1 cut(s)	1061
Fnu4HI	GCNGC	3 cut(s)	563, 834, 1233
FokI	GGATG	4 cut(s)	39, 143, 430, 572
Fsp4HI	GCNGC	3 cut(s)	563, 834, 1233
FspBI	CTAG	5 cut(s)	11, 26, 255, 492, 618
GlaI	GCGC	1 cut(s)	1005
GluI	GCNGC	3 cut(s)	563, 834, 1233
GsuI	CTGGAG	1 cut(s)	1076
HaeIII	GGCC	4 cut(s)	174, 851, 881, 1124
HapII	CCGG	2 cut(s)	486, 512
HhaI	GCGC	1 cut(s)	1006
Hin1II	CATG	7 cut(s)	262, 361, 415, 485, 800, 1027, 1075
Hin6I	GCGC	1 cut(s)	1004
HinP1I	GCGC	1 cut(s)	1004
HincII	GTYRAC	1 cut(s)	682
HindII	GTYRAC	1 cut(s)	682
HinfI	GANTC	5 cut(s)	120, 527, 750, 1076, 1210
HpaII	CCGG	2 cut(s)	486, 512
HphI	GGTGA	3 cut(s)	80, 332, 940
Hpy166II	GTNNAC	5 cut(s)	367, 571, 682, 1062, 1199
Hpy188I	TCNGA	9 cut(s)	7, 103, 160, 170, 460, 805, 913, 1143, 1246
Hpy188III	TCNNGA	5 cut(s)	56, 146, 338, 634, 949
Hpy8I	GTNNAC	5 cut(s)	367, 571, 682, 1062, 1199
HpyCH4III	ACNGT	2 cut(s)	1034, 1203
HpyCH4V	TGCA	6 cut(s)	88, 188, 262, 270, 796, 1088
HpyF3I	CTNAG	1 cut(s)	159
Hsp92II	CATG	7 cut(s)	262, 361, 415, 485, 800, 1027, 1075
HspAI	GCGC	1 cut(s)	1004
KflI	GGGWCCC	1 cut(s)	733
KpnI	GGTACC	1 cut(s)	585
Ksp22I	TGATCA	1 cut(s)	58
LguI	GCTCTTC	1 cut(s)	615
LmnI	GCTCC	2 cut(s)	704, 989
Lsp1109I	GCAGC	2 cut(s)	574, 1219
MaeI	CTAG	5 cut(s)	11, 26, 255, 492, 618
MaeIII	GTNAC	3 cut(s)	524, 539, 1171
MflI	RGATCY	2 cut(s)	340, 488
MluCI	AATT	8 cut(s)	79, 164, 425, 476, 544, 669, 807, 1239
MlyI	GAGTC	2 cut(s)	129, 521
MmeI	TCCRAC	3 cut(s)	638, 958, 1011
MnlI	CCTC	7 cut(s)	25, 154, 164, 500, 794, 1031, 1103
MseI	TTAA	1 cut(s)	1101
MslI	CAYNNNNRTG	3 cut(s)	416, 468, 923
MspI	CCGG	2 cut(s)	486, 512
MspR9I	CCNGG	1 cut(s)	878
MvaI	CCWGG	1 cut(s)	878
NcoI	CCATGG	1 cut(s)	357
NdeI	CATATG	1 cut(s)	387
NheI	GCTAGC	1 cut(s)	254
NlaIII	CATG	7 cut(s)	262, 361, 415, 485, 800, 1027, 1075
NlaIV	GGNNCC	6 cut(s)	342, 583, 734, 735, 818, 985
NmeAIII	GCCGAG	1 cut(s)	960
NmuCI	GTSAC	3 cut(s)	524, 539, 1171
NspI	RCATGY	4 cut(s)	262, 415, 800, 1027
PaeI	GCATGC	1 cut(s)	262
PciI	ACATGT	1 cut(s)	1023
PciSI	GCTCTTC	1 cut(s)	615
PfeI	GAWTC	3 cut(s)	750, 1076, 1210
PflMI	CCANNNNNTGG	2 cut(s)	826, 1054
PkrI	GCNGC	3 cut(s)	564, 835, 1234
PleI	GAGTC	2 cut(s)	128, 521
PpsI	GAGTC	2 cut(s)	128, 521
PpuMI	RGGWCCY	1 cut(s)	733
PscI	ACATGT	1 cut(s)	1023
Psp5II	RGGWCCY	1 cut(s)	733
Psp6I	CCWGG	1 cut(s)	876
PspGI	CCWGG	1 cut(s)	876
PspN4I	GGNNCC	6 cut(s)	342, 583, 734, 735, 818, 985
PspPI	GGNCC	3 cut(s)	509, 733, 817
PspPPI	RGGWCCY	1 cut(s)	733
PsuI	RGATCY	2 cut(s)	340, 488
RsaI	GTAC	2 cut(s)	583, 972
RsaNI	GTAC	2 cut(s)	582, 971
RseI	CAYNNNNRTG	3 cut(s)	416, 468, 923
SapI	GCTCTTC	1 cut(s)	615
SaqAI	TTAA	1 cut(s)	1101
SatI	GCNGC	3 cut(s)	563, 834, 1233
Sau96I	GGNCC	3 cut(s)	509, 733, 817
SchI	GAGTC	2 cut(s)	129, 521
ScrFI	CCNGG	1 cut(s)	878
SfcI	CTRYAG	1 cut(s)	1167
SinI	GGWCC	3 cut(s)	509, 733, 817
SmiMI	CAYNNNNRTG	3 cut(s)	416, 468, 923
SmlI	CTYRAG	1 cut(s)	1129
SmoI	CTYRAG	1 cut(s)	1129
SpeI	ACTAGT	1 cut(s)	25
SphI	GCATGC	1 cut(s)	262
Sse9I	AATT	8 cut(s)	79, 164, 425, 476, 544, 669, 807, 1239
SsiI	CCGC	1 cut(s)	834
SspMI	CTAG	5 cut(s)	11, 26, 255, 492, 618
StyD4I	CCNGG	1 cut(s)	876
StyI	CCWWGG	4 cut(s)	286, 357, 718, 1217
TaaI	ACNGT	2 cut(s)	1034, 1203
TaqI	TCGA	1 cut(s)	948
TasI	AATT	8 cut(s)	79, 164, 425, 476, 544, 669, 807, 1239
TatI	WGTACW	1 cut(s)	970
TauI	GCSGC	1 cut(s)	836
TfiI	GAWTC	3 cut(s)	750, 1076, 1210
Tru1I	TTAA	1 cut(s)	1101
Tru9I	TTAA	1 cut(s)	1101
TscAI	CASTG	3 cut(s)	773, 798, 1039
TseFI	GTSAC	3 cut(s)	524, 539, 1171
TseI	GCWGC	2 cut(s)	562, 1232
Tsp45I	GTSAC	3 cut(s)	524, 539, 1171
TspDTI	ATGAA	4 cut(s)	128, 418, 470, 900
TspRI	CASTG	3 cut(s)	773, 798, 1039
Van91I	CCANNNNNTGG	2 cut(s)	826, 1054
VpaK11BI	GGWCC	3 cut(s)	509, 733, 817
XapI	RAATTY	4 cut(s)	164, 476, 669, 1239
XceI	RCATGY	4 cut(s)	262, 415, 800, 1027
XmiI	GTMKAC	1 cut(s)	1061
XspI	CTAG	5 cut(s)	11, 26, 255, 492, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.